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# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
inherit cmake-utils flag-o-matic python-single-r1 toolchain-funcs versionator
MYPV=$(get_version_component_range 1-2)
MYPD=${PN}-data-0.9
DESCRIPTION="Large Scale Machine Learning Toolbox"
HOMEPAGE="http://shogun-toolbox.org/"
SRC_URI="
ftp://shogun-toolbox.org/shogun/releases/${MYPV}/sources/${P}.tar.bz2
test? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )
examples? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )"
LICENSE="GPL-3 free-noncomm"
SLOT="0/16"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="cpu_flags_x86_sse doc examples lua octave opencl python R ruby static-libs test"
REQUIRED_USE="
python? ( ${PYTHON_REQUIRED_USE} )
test? ( python )"
RDEPEND="
app-arch/bzip2
app-arch/gzip
app-arch/lzma
app-arch/snappy
dev-libs/lzo
dev-cpp/eigen:3
dev-libs/json-c:=
dev-libs/libxml2
dev-libs/protobuf:=
net-misc/curl
sci-libs/arpack
sci-libs/arprec
sci-libs/colpack
sci-libs/hdf5:=
sci-libs/nlopt
sci-mathematics/glpk:=
sci-mathematics/lpsolve:=
sys-libs/readline:0=
sys-libs/zlib
virtual/blas
virtual/cblas
virtual/lapack
lua? ( dev-lang/lua:0 )
octave? ( >=sci-mathematics/octave-4.2.0:=[hdf5] )
opencl? ( virtual/opencl )
python? (
${PYTHON_DEPS}
dev-python/numpy[${PYTHON_USEDEP}]
)
R? ( dev-lang/R )
ruby? ( dev-ruby/narray )"
DEPEND="${RDEPEND}
virtual/pkgconfig
doc? (
>=app-doc/doxygen-1.8.13-r1[dot]
dev-python/sphinx
)
lua? ( >=dev-lang/swig-3.0.12 )
octave? ( >=dev-lang/swig-3.0.12 )
python? (
>=dev-lang/swig-3.0.12
test? (
sci-libs/scipy
)
)
R? ( >=dev-lang/swig-3.0.12 )
ruby? ( >=dev-lang/swig-3.0.12 )
test? (
dev-python/jinja[${PYTHON_USEDEP}]
>=dev-cpp/gtest-1.8.0
)"
# javamodular needs jblas (painful to package properly)
# permodular work in progress (as 3.2.0)
# could actually support multiple pythons, multiple rubys
# feel free to do work for it
PATCHES=(
"${FILESDIR}"/${PN}-5.0.0-fix-buildsystem.patch
"${FILESDIR}"/${PN}-4.1.0-remove-C-linkage.patch
)
pkg_setup() {
use python && python-single-r1_pkg_setup
}
src_configure() {
export ATLAS_LIBRARY="$($(tc-getPKG_CONFIG) --libs cblas lapack)"
export CBLAS_LIBRARY="$($(tc-getPKG_CONFIG) --libs cblas)"
export ATLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas cblas lapack)"
export LAPACK_LIBRARIES="$($(tc-getPKG_CONFIG) --libs lapack)"
append-cppflags "$($(tc-getPKG_CONFIG) --cflags cblas)"
local mycmakeargs=(
-DCMAKE_SKIP_RPATH=ON
-DCMAKE_SKIP_INSTALL_RPATH=ON
-DLIB_INSTALL_DIR=$(get_libdir)
-DENABLE_TESTING=$(usex test)
-DBUILD_EXAMPLES=$(usex examples)
-DDISABLE_SSE=$(usex !cpu_flags_x86_sse)
-DCMAKE_DISABLE_FIND_PACKAGE_Pandoc=ON
$(cmake-utils_use_find_package doc Sphinx)
$(cmake-utils_use_find_package doc Doxygen)
# Features:
-DENABLE_COVERAGE=OFF
-DENABLE_COLPACK=ON
-DENABLE_PROTOBUF=ON
-DENABLE_PYTHON_DEBUG=OFF
-DENABLE_VIENNACL=$(usex opencl)
-DUSE_ARPREC=ON
-DUSE_HDF5=ON
# Bindings:
-DJavaModular=OFF
-DPerlModular=OFF
-DCSharpModular=OFF
-DLuaModular=$(usex lua)
-DOctaveModular=$(usex octave)
-DPythonModular=$(usex python)
-DRModular=$(usex R)
-DRubyModular=$(usex ruby)
# Disable bundled libs
-DBUNDLE_COLPACK=OFF
-DBUNDLE_JSON=OFF
-DBUNDLE_NLOPT=OFF
)
cmake-utils_src_configure
# gentoo bug #302621
has_version 'sci-libs/hdf5[mpi]' && export CXX=mpicxx CC=mpicc
}
src_compile() {
cmake-utils_src_compile
use doc && cmake-utils_src_compile -C doc
}
src_install() {
cmake-utils_src_install
if use doc; then
local i
for i in lua octave python R ruby; do
if use $i; then
docinto html/${i,}_modular
dodoc -r "${BUILD_DIR}"/src/interfaces/${i,}_modular/modshogun/doxygen_xml/.
fi
done
fi
}
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