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Diffstat (limited to 'sci-biology/vienna-rna/metadata.xml')
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diff --git a/sci-biology/vienna-rna/metadata.xml b/sci-biology/vienna-rna/metadata.xml new file mode 100644 index 000000000000..50f4e02d4a18 --- /dev/null +++ b/sci-biology/vienna-rna/metadata.xml @@ -0,0 +1,22 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <longdescription> + The Vienna RNA Package consists of a C code library and several + stand-alone programs for the prediction and comparison of RNA secondary + structures. RNA secondary structure prediction through energy + minimization is the most used function in the package. We provide three + kinds of dynamic programming algorithms for structure prediction: the + minimum free energy algorithm of (Zuker and Stiegler 1981) which yields a + single optimal structure, the partition function algorithm of + (McCaskill 1990) which calculates base pair probabilities in the + thermodynamic ensemble, and the suboptimal folding algorithm of + (Wuchty et.al 1999) which generates all suboptimal structures within a + given energy range of the optimal energy. For secondary structure + comparison, the package contains several measures of distance + (dissimilarities) using either string alignment or tree-editing + (Shapiro and Zhang 1990). Finally, we provide an algorithm to design + sequences with a predefined structure (inverse folding). +</longdescription> +</pkgmetadata> |