diff options
Diffstat (limited to 'sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild')
| -rw-r--r-- | sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild | 52 |
1 files changed, 0 insertions, 52 deletions
diff --git a/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild b/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild deleted file mode 100644 index 66298cbc1972..000000000000 --- a/sci-biology/cufflinks/cufflinks-2.2.1-r1.ebuild +++ /dev/null @@ -1,52 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -AUTOTOOLS_AUTORECONF=true - -inherit autotools-utils flag-o-matic toolchain-funcs - -DESCRIPTION="Transcript assembly, differential expression, and differential regulation for RNA-Seq" -HOMEPAGE="http://cufflinks.cbcb.umd.edu/" -SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/${P}.tar.gz" - -SLOT="0" -LICENSE="Artistic" -IUSE="debug" -KEYWORDS="~amd64 ~x86" - -DEPEND=" - || ( - ( - >=sci-biology/samtools-0.1.18 - sci-libs/htslib - ) - <sci-biology/samtools-1 - ) - >=dev-libs/boost-1.47.0:= - <dev-libs/boost-1.56.0:= - dev-cpp/eigen:3 -" -RDEPEND="${DEPEND}" - -PATCHES=( - "${FILESDIR}"/${P}-hts.patch - "${FILESDIR}"/${P}-flags.patch - ) - -src_prepare() { - append-cppflags $($(tc-getPKG_CONFIG) --cflags eigen3) - autotools-utils_src_prepare -} - -src_configure() { - local myeconfargs=( - --disable-optim - --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)/" - --with-bam="${EPREFIX}/usr/" - $(use_enable debug) - ) - autotools-utils_src_configure -} |