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-rw-r--r--sci-chemistry/votca-csg/Manifest21
-rw-r--r--sci-chemistry/votca-csg/votca-csg-1.4.1.ebuild113
-rw-r--r--sci-chemistry/votca-csg/votca-csg-1.4.ebuild113
-rw-r--r--sci-chemistry/votca-csg/votca-csg-1.5.ebuild100
-rw-r--r--sci-chemistry/votca-csg/votca-csg-1.6.1.ebuild92
-rw-r--r--sci-chemistry/votca-csg/votca-csg-1.6.2.ebuild92
-rw-r--r--sci-chemistry/votca-csg/votca-csg-1.6.3.ebuild92
-rw-r--r--sci-chemistry/votca-csg/votca-csg-1.6_rc1.ebuild92
8 files changed, 0 insertions, 715 deletions
diff --git a/sci-chemistry/votca-csg/Manifest b/sci-chemistry/votca-csg/Manifest
index 373cbaa92f2b..cad8d248e112 100644
--- a/sci-chemistry/votca-csg/Manifest
+++ b/sci-chemistry/votca-csg/Manifest
@@ -1,30 +1,9 @@
-DIST votca-csg-1.4.1.tar.gz 347702 BLAKE2B 8c98804bafd75148fa72a9e119d4448ab9b04fb6f305e1e162a18013871d03778873a50670ce06bb218fc063f51ad67efc4a182c2d7bb46f91b59e30181b71d6 SHA512 87f2798c9b5f2d82ae1c158238f7a3b7007c7ceb7ce82503f0b002f605f2cc0b5ca4c8ef24fab571efae63a81e7a60bc476b5433962c239de4f5d42bae3c10ea
-DIST votca-csg-1.4.tar.gz 346527 BLAKE2B 8f0a41f9aa9fd865e2e544d5fd587d93d631edc2dabab8edfc3461582da2e0401a266a42be1c0f1e6647502cdcccee55b5bba891aa156394012b8b5e1b06f7e8 SHA512 26318644c7af2dfa1b81242b27ffac98f2180c3a1f05581bc50a00f644cec4b19ffbaf41c9d941a4714171b56ae93fe41f1a663cd0593ae2b0be2da379119d9b
DIST votca-csg-1.5.1.tar.gz 708319 BLAKE2B 2ea75cf08dc3005bd08ebe85113d95743fe85bae4b7ac3c2e2d9b64be64a7103ecf30b9edf45cffa86b7588d5c57a0256aef02f4590fa6031cb63881480bd0fd SHA512 3559452182c325d5df72918ec6e12122c8214df9733d779c123ff199597fe47fc493fd75adf1f5dbc6b55016373863378ba3cc69fb6b61bc1531c6e591d8131c
-DIST votca-csg-1.5.tar.gz 429164 BLAKE2B da04bd9ce8e879e9a961006256e03d160fa49fe77aa2f1eff0986b338296b04137bb087ecfabb7f2fc855b0ccd83dc4ddddfd65c43303bf5f2eef0519d27b0ec SHA512 c5a77ded3c9b2582494bea55b464689d566d4155713af823dccc6999f98438444d51fae3948144f82c2aaf3914eee740fe21e8828af689d37ab0b5ffea0605fa
-DIST votca-csg-1.6.1.tar.gz 474044 BLAKE2B 36ededfffe7af5b87b2a031f69afbb9cc727af9454466163312e48c23719f6fe3cb727de96c419ae6e7d4901576013bd76f84d8e7e394cc65df4d83bd1ce30bb SHA512 b8f0f1bf2ca57ee9e2050b4a76e1d725ccb0908314886415f36d4e4554953b4e1c93f7c05502afb77f9b7b5ef3059ebbf7f223b965ba72ae45736798fa2e6ad9
-DIST votca-csg-1.6.2.tar.gz 522982 BLAKE2B e0376e04e7baabaa45cab2cc87ff3d7574a35a4a50d87763bb42232eb6f110904b9fb5cdee0a8f2b4057a441a8ca5e276a8d44e14ec3609301832c2ed18cfd94 SHA512 e1d88cc9d18718f323355736afaf309940234001abb39414dd4990f1ff231ef3e8f71d51c78929c422c296b96f304fa17f6c9671071148ff1446bdc1eb442708
-DIST votca-csg-1.6.3.tar.gz 523225 BLAKE2B 4edb53515957f86f272c0bfbef2d72086432665d97fec4bda6011aaf732a5878c2d85e23d15ac24e5051ae3d11328799b5a0d76cf5c13a1202e11be10fe16b0b SHA512 7804d17f5c79ab6420653e1f1007539edb8c22dab47b0a9c776d726c9ac955ae2e3740bcfa171d9a347b074692be81499329a54e9dcfa53a173a7be082739525
DIST votca-csg-1.6.4.tar.gz 537966 BLAKE2B c9ccc3aa28bdc4a2a2c080104b70602d8cf4be19a71e7d0b4a1c03d11f54b645984103d1662823a9308a4e4c4baedef731de06ff314b168f89e7326c0d3c8ee9 SHA512 4cdbf6c0a593720675f48f574ff9a93d038a48037543c1e09a4559d3eb262a2d8bf83d5f5dab85b4820a541e0c57f7cca78315d5b3382763e8acd8cc0fcb65ac
DIST votca-csg-1.6.tar.gz 464175 BLAKE2B 1871c7edc4b4e848a06049a7c687e906f166312777bdbf5c65be8efe8d5032582fdca9dc7eca453b7013901f409326b0583c79731c68fa2b4e6366f021958b0b SHA512 76cda93023d46a66ae31edcec0ece709ddc70a9be9d098721b945006c197ed3b6cbd1e643158797be518c4fe66f7b23d3e8d8735cbd9e155db3db0d79929cfbe
-DIST votca-csg-1.6_rc1.tar.gz 479265 BLAKE2B c4ba3c81eefd375eea6f8c0b1cd60f9cc80898fb7e8e811ecc286f06d94bd4316edfca277649ec3f7f8b751b2f2928ca2dfe61cc3b1c3060a324ea783c62003f SHA512 6622648ddc3308ca2f8e98d6dbcd28e33a4e0fb44d96ef94ebcaa2e87e5ba3ca2ab83dcc1de4fd0803dbc20ba7192f5fdd2c935b364ed4e2122b5948c10d4936
-DIST votca-csg-manual-1.4.1.pdf 1282641 BLAKE2B 370b7c8997649555fd2360b999cf381c340a74c3747afda23d0e9d346367cc6d14d4e9a0e9ac82184945427d30050dd623dd1b6d8218c6ff3d2f17331987aaae SHA512 e89f41af05eaeb9ea499e8625cc98e2632ec647ec2d8c9c9052dcd4d2935d082b29b51495514e3e06e73ce42b8cda7017fc523a013569378e2bc86bf88ad32d4
-DIST votca-csg-manual-1.4.pdf 1281983 BLAKE2B 5659c2e327ba7bb00fac15adfb578288d546b509366863f593776a62dd3064662535d4fd525f1063f5ccaf47446822f13fefd7f66aa9d68cd1a4a7c99d66a790 SHA512 2e1f4a4375d83df9bd357d4d17e79d26a3a31c9177f008de86721427ffc6f43a5000ec840691108b52a8aecf962321ba6363cd975c7445d7230ee5b0b151b3fa
DIST votca-csg-manual-1.5.1.pdf 1263719 BLAKE2B 29e2ce27215787a1121e45ec1e88ce7c61ba81709a2519aa0959eede505498b9aaf4f38666bb1a4f97837c98b862e7ed02405da07294a7ec76cc80390fe72e0d SHA512 7d9fb4c635383e1b9c9547691f8729e19f273fcafc4dab2a6b438b3ce98ea05bd31887d09bc4edc86ceb0b04d71a4371aed7aadc3ba6864f7be2ef3328ede642
-DIST votca-csg-manual-1.5.pdf 1273566 BLAKE2B edfa2adb942d968cf79499e89342b7aaab64edfbfb6e02f76a66201df0920a58acc17bf4e2e4846d104519df163223c27f283cc5798ec7b64d9317a7728ff8c4 SHA512 da298ab0c27000ccf7fb5793c4252c4e17a969709db2649a5acb56af6208b954312c46a2ea8399cdb879b699e72a0ded0b2fe1bcd26431c6625f36b09c0267a5
-DIST votca-csg-manual-1.6.1.pdf 1248350 BLAKE2B d4433974e38785fb968bd357ed2914515b2a22a78d6417597265bb1420b5af8b7b9849533a5faba571bcf635eff8385b244b2252bf7a20d3adb9318cd7115b03 SHA512 d627a9c7a71b8ac5e8d6ca109f0ea56978706b0dd1408aaf10b75b4b52f40b6150063248477ca2b5922f603e8d582ddd4dec3de73b3991db5fbb7bf204d347a3
-DIST votca-csg-manual-1.6.2.pdf 1241907 BLAKE2B 9d51682099081cb8301eed10e7bb4f3afea89561626da5f3b361939d8d9b4ed15bb49392074bc19c530d413f4913afbf4ce612ee62e0e4d22c30f856a2019cbb SHA512 a85094bfa9ae2fcef52f42af162eb1a94ed30de9d7785aac03d7591177f6982dd315874566ce2671df508a3139ce8816c6becf0e0c1d0bfb9b675063810eb3e7
-DIST votca-csg-manual-1.6.3.pdf 1242192 BLAKE2B 18097cd949b1c874b41b9e0df0ae3815027a5d7fe3d7a3b236ae2aacb269106265e9467a4d78dfefd6f51bcd514727d88500e43d759df0d23f76644833d4b2f7 SHA512 a631670100dd1f26f2fa815b714dc51c7551f2d92d2072af210778cc380bfdcbc70d01c0a47b88b0ea351d73a5fd334db1da8463d21c933d7af3d7af3b10ccc2
DIST votca-csg-manual-1.6.4.pdf 1242124 BLAKE2B 003a255d2869c8185f9e03038f646a80b682be3daceb18757c791f5d52101379402aee20c5dcb65ef8ce651bd6f6590ad5249e835e53ce92e04eb33214017a9e SHA512 36956acd24a21cb0a1dd26d6640b41b7473132948327c05856191b4f9531b4d1d5f98be68a9d1a847935d47633d483e87c2300634233a6e617a010c1fb563690
DIST votca-csg-manual-1.6.pdf 1248178 BLAKE2B 5213d55787041db81fe8563febbf130db6aed9233e569039b66d69cfb173131353d45bef824640ee7b0a3fed7821ede4d5a6ce6ffc14d1548499317afdc0248a SHA512 e91d4b8397b67808c9671b9adbaad41fd9a0ede90066e220839d86f21a9bbcd4e433534faf1dfbca106d55af5a6cce0425a5bdfa3eb30ebe14469594da0129ca
-DIST votca-csg-manual-1.6_rc1.pdf 1248403 BLAKE2B b702eff4a36d27d592147f115f4e9080cbf580b6401141a14865395f0cb927c35f60035f92724e71e5edadbbe3e317f93989eb6f2e0a0e7b9f685e56851546d2 SHA512 2514bd2fee4bae787a3f8c07d1f1d90061a2b503255efe0730ed164bb002c7e7ad7309ccd3b5b931994f70b7ed99afde28955d9ea1b34c86df21bfcb8bfb39bb
-DIST votca-csg-tutorials-1.4.1.tar.gz 6339417 BLAKE2B e9acf8e421f6fce4d97be2d51fb559979c6fd3e6b042525cedf32cadeab1dddc5b1aaf80bbbfd387da3bce71672759c2e84d317c789f616dc71834c72a581fff SHA512 896ec9d6b2537a06301046a74c1957708eb96d9854b3ec855fe3457208c142f6fb26a03e323a2644862a1efd0030fcceb1189f73655b984462f0f7127a02de90
-DIST votca-csg-tutorials-1.4.tar.gz 6348417 BLAKE2B 612fcbc4457a57be74e5306bf86d6e031ea8cd55ebe3f4d246c0876e272e6e6dd535c8dd2f24f7593cb1ef31fbc18111269d29cb69120368ddef7b1b7d25825c SHA512 f3eb28a133ebc04eed07f84d5962943cb9c547c1099638127f15e0015dfdf3f0b25aab4c97d009d6040bf1d69d408cc178edd6e803d33bf1d831e12dca0671c7
DIST votca-csg-tutorials-1.5.1.tar.gz 5949467 BLAKE2B c6de6084fbb1d2c4ac2ce75d01a1153eabc63386063de800ff2dc6b483b0568191e7f06ddcb8be46123224ccfd3a97f5fb4e7cd603c0ee99a8636d7143f6c701 SHA512 f2e709ae31d914fe12a4ce37b5019deb878b15ade14972f2a8204bec8970ba2c8946b71b94a5bfd6f7569e41173bfbc75275ea09cbee4358ad1de0e84751049c
-DIST votca-csg-tutorials-1.5.tar.gz 5947774 BLAKE2B d497f1e9282c4cacc070d09d901ad8f5d3042ab3a279aa4d1c3bcd3184dc22231d1f2a75ba0ffe245e6f6300fb740e562b24c8039594ec01307491a6068b55f6 SHA512 00447380fa887178ad02cc4e1425a04fc2fd2babdd4790d387fcd4aa2734dc14dacf4b4444d420937aa0a5b53e90741b44f9a4bca31bdcdae10fbfb8323e9848
-DIST votca-csg-tutorials-1.6.1.tar.gz 5945945 BLAKE2B 18ea7e406acf70e37049b1f8676551d96b20825fba25bb9c1e674b0f94f5ee41bd74ce77619880dfb2e2f1f8fb0b40de9ce8a5e9e9d8470639af057376a19632 SHA512 82d60fcea4859e1caa6138147848427dbdb1ddcf4e0713b6f2d50cd624ceacdbce1ceb8e98fb85d079d8d9de02f501ec8c9236243fe75761e44486f27207249b
-DIST votca-csg-tutorials-1.6.2.tar.gz 5945110 BLAKE2B 2871c89c763c8624deb877f90da10cd2021ec5b10a0d8473c4523b70a179247ad2e809aa5b0aab7c36a324d929b55f3b2070822914043382424b87fbf34ef05b SHA512 40f377a824f6c10be759adf3e1b87dbc5392b00e4a377ba04d998f96aa9b7ceb986c2e5cfac16ea3047f08d2d76deb7e9f3aadfba794f58b8f131861f7a7ff04
-DIST votca-csg-tutorials-1.6.3.tar.gz 5944550 BLAKE2B ab84819cd567f60d05fe4368b077541fe4804dc91040354b99a37aa23831af26047b87d2b987a8eb20c4c588fd4fc099302493ce77b4df70f436fc372ec25a4a SHA512 a05b56272b293b5ec7ea5d413f4d34e023ac3f2fe018548891be71ba925181c05ea758b73a0264ee76626582084e7e9f8972dba66ceed31642d3f35796354b99
DIST votca-csg-tutorials-1.6.4.tar.gz 5944389 BLAKE2B 66f1d4947bb28ec602250226ad2c08cc02278a90776acbcadca2df3078361435fb2353ee0fa299d0d19697d36682f20aab709d45539d5ac7e7070942601ebc3f SHA512 7e40037f2e70c861fd7f5c63806c17ad56672a340a8795fa745414940c55f593bef32b9f6b9050400131ed9e66aa927149e9d324a1c264364d8504baf1921e28
DIST votca-csg-tutorials-1.6.tar.gz 5946764 BLAKE2B 018bd00c86c0a85baf35afd2ea4206c96dee8f948dcbf331b53e6f685b69bf2c909731b15ba3261c86cee9e1960ec5cfa7b2ee0c6dcfabbbbc110789840184ad SHA512 36d3a66c19d230f2002170851345da7063aeef1f29841945b8a182f73922617823815dde5d7289fb0f80e771ac03780adacdf95af4814235edbf69a4772b3696
-DIST votca-csg-tutorials-1.6_rc1.tar.gz 5946622 BLAKE2B 7bf0c7083ca7b148d16f7b77b9f785c11b16a8124a5435522e8c065859f4c2ae560c622f04021918b2683c9955d5a1b674c84fad179319f5fedb86616bbe24e7 SHA512 1c89f95944f8277a995d9d6d7dacfae2ae1be54a9a7b19c53d3464a4bdf5da0556e862033ba0a5f442b1ee5bd79bafd478655856fe266f4285c98e14512ce259
diff --git a/sci-chemistry/votca-csg/votca-csg-1.4.1.ebuild b/sci-chemistry/votca-csg/votca-csg-1.4.1.ebuild
deleted file mode 100644
index be4888c8858f..000000000000
--- a/sci-chemistry/votca-csg/votca-csg-1.4.1.ebuild
+++ /dev/null
@@ -1,113 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-CMAKE_MAKEFILE_GENERATOR="ninja"
-
-inherit bash-completion-r1 cmake-utils multilib
-
-IUSE="doc examples extras +gromacs hdf5"
-PDEPEND="extras? ( ~sci-chemistry/${PN}apps-${PV} )"
-if [ "${PV}" != "9999" ]; then
- SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
- doc? ( https://github.com/${PN/-//}-manual/releases/download/v${PV}/${PN}-manual-${PV}.pdf )
- examples? ( https://github.com/${PN/-//}-tutorials/archive/v${PV}.tar.gz -> ${PN}-tutorials-${PV}.tar.gz )"
- KEYWORDS="~amd64 ~x86 ~amd64-linux"
- S="${WORKDIR}/${P#votca-}"
-else
- inherit git-r3
- EGIT_REPO_URI="https://github.com/${PN/-//}.git"
- KEYWORDS="~amd64 ~x86"
-fi
-
-DESCRIPTION="Votca coarse-graining engine"
-HOMEPAGE="http://www.votca.org"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-
-RDEPEND="
- ~sci-libs/votca-tools-${PV}
- gromacs? ( <sci-chemistry/gromacs-2019_beta1:= )
- hdf5? ( sci-libs/hdf5 )
- dev-lang/perl
- app-shells/bash:*"
-
-DEPEND="${RDEPEND}
- doc? (
- app-doc/doxygen[dot]
- dev-texlive/texlive-latexextra
- virtual/latex-base
- dev-tex/pgf
- )
- >=app-text/txt2tags-2.5
- virtual/pkgconfig"
-
-DOCS=( README.md NOTICE CHANGELOG.md )
-
-src_unpack() {
- if [[ ${PV} != *9999 ]]; then
- default
- else
- git-r3_src_unpack
- if use doc; then
- EGIT_REPO_URI="https://github.com/${PN/-//}-manual.git"
- EGIT_BRANCH="master"
- EGIT_CHECKOUT_DIR="${WORKDIR}/${PN}-manual"\
- git-r3_src_unpack
- fi
- if use examples; then
- EGIT_REPO_URI="https://github.com/${PN/-//}-tutorials.git"
- EGIT_BRANCH="master"
- EGIT_CHECKOUT_DIR="${WORKDIR}/${PN#votca-}-tutorials"\
- git-r3_src_unpack
- fi
- fi
-}
-
-src_configure() {
- mycmakeargs=(
- -DWITH_GMX=$(usex gromacs)
- -DWITH_H5MD=$(usex hdf5)
- -DWITH_RC_FILES=OFF
- -DLIB=$(get_libdir)
- )
- cmake-utils_src_configure
-}
-
-src_install() {
- cmake-utils_src_install
- newbashcomp scripts/csg-completion.bash csg_call
- for i in "${ED}"/usr/bin/csg_*; do
- [[ ${i} = *csg_call ]] && continue
- bashcomp_alias csg_call "${i##*/}"
- done
- if use doc; then
- if [[ ${PV} = *9999* ]]; then
- #we need to do that here, because we need an installed version of csg to build the manual
- [[ ${CHOST} = *-darwin* ]] && \
- emake -C "${WORKDIR}/${PN}"-manual PATH="${PATH}${PATH:+:}${ED}/usr/bin" DYLD_LIBRARY_PATH="${DYLD_LIBRARY_PATH}${DYLD_LIBRARY_PATH:+:}${ED}/usr/$(get_libdir)" \
- || emake -C "${WORKDIR}/${PN}"-manual PATH="${PATH}${PATH:+:}${ED}/usr/bin" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}${LD_LIBRARY_PATH:+:}${ED}/usr/$(get_libdir)"
- newdoc "${WORKDIR}/${PN}"-manual/manual.pdf "${PN}-manual-${PV}.pdf"
- else
- dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
- fi
- cmake-utils_src_make -C "${CMAKE_BUILD_DIR}" html
- dodoc -r "${CMAKE_BUILD_DIR}"/share/doc/html
- fi
- if use examples; then
- insinto "/usr/share/doc/${PF}/tutorials"
- docompress -x "/usr/share/doc/${PF}/tutorials"
- rm -rf "${WORKDIR}/${PN#votca-}"-tutorials*/CMake*
- doins -r "${WORKDIR}/${PN#votca-}"-tutorials*/*
- fi
-}
-
-pkg_postinst() {
- einfo
- einfo "Please read and cite:"
- einfo "VOTCA, J. Chem. Theory Comput. 5, 3211 (2009). "
- einfo "https://dx.doi.org/10.1021/ct900369w"
- einfo
-}
diff --git a/sci-chemistry/votca-csg/votca-csg-1.4.ebuild b/sci-chemistry/votca-csg/votca-csg-1.4.ebuild
deleted file mode 100644
index 7d5481d94516..000000000000
--- a/sci-chemistry/votca-csg/votca-csg-1.4.ebuild
+++ /dev/null
@@ -1,113 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-CMAKE_MAKEFILE_GENERATOR="ninja"
-
-inherit bash-completion-r1 cmake-utils multilib
-
-IUSE="doc examples extras +gromacs hdf5"
-PDEPEND="extras? ( ~sci-chemistry/${PN}apps-${PV} )"
-if [ "${PV}" != "9999" ]; then
- SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
- doc? ( https://github.com/${PN/-//}-manual/releases/download/v${PV}/${PN}-manual-${PV}.pdf )
- examples? ( https://github.com/${PN/-//}-tutorials/archive/v${PV}.tar.gz -> ${PN}-tutorials-${PV}.tar.gz )"
- KEYWORDS="amd64 x86 ~amd64-linux"
- S="${WORKDIR}/${P#votca-}"
-else
- inherit git-r3
- EGIT_REPO_URI="https://github.com/${PN/-//}.git"
- KEYWORDS="amd64 x86"
-fi
-
-DESCRIPTION="Votca coarse-graining engine"
-HOMEPAGE="http://www.votca.org"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-
-RDEPEND="
- ~sci-libs/votca-tools-${PV}
- gromacs? ( <sci-chemistry/gromacs-2019_beta1:= )
- hdf5? ( sci-libs/hdf5 )
- dev-lang/perl
- app-shells/bash:*"
-
-DEPEND="${RDEPEND}
- doc? (
- app-doc/doxygen[dot]
- dev-texlive/texlive-latexextra
- virtual/latex-base
- dev-tex/pgf
- )
- >=app-text/txt2tags-2.5
- virtual/pkgconfig"
-
-DOCS=( README.md NOTICE CHANGELOG.md )
-
-src_unpack() {
- if [[ ${PV} != *9999 ]]; then
- default
- else
- git-r3_src_unpack
- if use doc; then
- EGIT_REPO_URI="https://github.com/${PN/-//}-manual.git"
- EGIT_BRANCH="master"
- EGIT_CHECKOUT_DIR="${WORKDIR}/${PN}-manual"\
- git-r3_src_unpack
- fi
- if use examples; then
- EGIT_REPO_URI="https://github.com/${PN/-//}-tutorials.git"
- EGIT_BRANCH="master"
- EGIT_CHECKOUT_DIR="${WORKDIR}/${PN#votca-}-tutorials"\
- git-r3_src_unpack
- fi
- fi
-}
-
-src_configure() {
- mycmakeargs=(
- -DWITH_GMX=$(usex gromacs)
- -DWITH_H5MD=$(usex hdf5)
- -DWITH_RC_FILES=OFF
- -DLIB=$(get_libdir)
- )
- cmake-utils_src_configure
-}
-
-src_install() {
- cmake-utils_src_install
- newbashcomp scripts/csg-completion.bash csg_call
- for i in "${ED}"/usr/bin/csg_*; do
- [[ ${i} = *csg_call ]] && continue
- bashcomp_alias csg_call "${i##*/}"
- done
- if use doc; then
- if [[ ${PV} = *9999* ]]; then
- #we need to do that here, because we need an installed version of csg to build the manual
- [[ ${CHOST} = *-darwin* ]] && \
- emake -C "${WORKDIR}/${PN}"-manual PATH="${PATH}${PATH:+:}${ED}/usr/bin" DYLD_LIBRARY_PATH="${DYLD_LIBRARY_PATH}${DYLD_LIBRARY_PATH:+:}${ED}/usr/$(get_libdir)" \
- || emake -C "${WORKDIR}/${PN}"-manual PATH="${PATH}${PATH:+:}${ED}/usr/bin" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}${LD_LIBRARY_PATH:+:}${ED}/usr/$(get_libdir)"
- newdoc "${WORKDIR}/${PN}"-manual/manual.pdf "${PN}-manual-${PV}.pdf"
- else
- dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
- fi
- cmake-utils_src_make -C "${CMAKE_BUILD_DIR}" html
- dodoc -r "${CMAKE_BUILD_DIR}"/share/doc/html
- fi
- if use examples; then
- insinto "/usr/share/doc/${PF}/tutorials"
- docompress -x "/usr/share/doc/${PF}/tutorials"
- rm -rf "${WORKDIR}/${PN#votca-}"-tutorials*/CMake*
- doins -r "${WORKDIR}/${PN#votca-}"-tutorials*/*
- fi
-}
-
-pkg_postinst() {
- einfo
- einfo "Please read and cite:"
- einfo "VOTCA, J. Chem. Theory Comput. 5, 3211 (2009). "
- einfo "https://dx.doi.org/10.1021/ct900369w"
- einfo
-}
diff --git a/sci-chemistry/votca-csg/votca-csg-1.5.ebuild b/sci-chemistry/votca-csg/votca-csg-1.5.ebuild
deleted file mode 100644
index 546fcb99ab73..000000000000
--- a/sci-chemistry/votca-csg/votca-csg-1.5.ebuild
+++ /dev/null
@@ -1,100 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-CMAKE_MAKEFILE_GENERATOR="ninja"
-
-inherit bash-completion-r1 cmake-utils multilib
-
-IUSE="doc examples extras +gromacs hdf5"
-PDEPEND="extras? ( ~sci-chemistry/${PN}apps-${PV} )"
-if [ "${PV}" != "9999" ]; then
- SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
- doc? ( https://github.com/${PN/-//}-manual/releases/download/v${PV}/${PN}-manual-${PV}.pdf )
- examples? ( https://github.com/${PN/-//}-tutorials/archive/v${PV}.tar.gz -> ${PN}-tutorials-${PV}.tar.gz )"
- KEYWORDS="amd64 ~x86 ~amd64-linux"
- S="${WORKDIR}/${P#votca-}"
-else
- inherit git-r3
- EGIT_REPO_URI="https://github.com/${PN/-//}.git"
- KEYWORDS="amd64"
- PDEPEND="${PDEPEND} doc? ( ~app-doc/${PN}-manual-${PV} )"
-fi
-
-DESCRIPTION="Votca coarse-graining engine"
-HOMEPAGE="http://www.votca.org"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-
-RDEPEND="
- ~sci-libs/votca-tools-${PV}
- >=dev-cpp/eigen-3.3
- gromacs? ( <sci-chemistry/gromacs-2020:= )
- hdf5? ( sci-libs/hdf5 )
- dev-lang/perl
- app-shells/bash:*"
-
-DEPEND="${RDEPEND}
- doc? (
- app-doc/doxygen[dot]
- dev-texlive/texlive-latexextra
- virtual/latex-base
- dev-tex/pgf
- )
- >=app-text/txt2tags-2.5
- virtual/pkgconfig"
-
-DOCS=( README.md NOTICE CHANGELOG.md )
-
-src_unpack() {
- if [[ ${PV} != *9999 ]]; then
- default
- else
- git-r3_src_unpack
- if use examples; then
- EGIT_REPO_URI="https://github.com/${PN/-//}-tutorials.git"
- EGIT_BRANCH="master"
- EGIT_CHECKOUT_DIR="${WORKDIR}/${PN#votca-}-tutorials"\
- git-r3_src_unpack
- fi
- fi
-}
-
-src_configure() {
- mycmakeargs=(
- -DWITH_GMX=$(usex gromacs)
- -DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex '!hdf5')
- -DWITH_RC_FILES=OFF
- )
- cmake-utils_src_configure
-}
-
-src_install() {
- cmake-utils_src_install
- newbashcomp scripts/csg-completion.bash csg_call
- for i in "${ED}"/usr/bin/csg_*; do
- [[ ${i} = *csg_call ]] && continue
- bashcomp_alias csg_call "${i##*/}"
- done
- if use doc; then
- [[ ${PV} != *9999* ]] && dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
- cmake-utils_src_make -C "${CMAKE_BUILD_DIR}" html
- dodoc -r "${CMAKE_BUILD_DIR}"/share/doc/html
- fi
- if use examples; then
- insinto "/usr/share/doc/${PF}/tutorials"
- docompress -x "/usr/share/doc/${PF}/tutorials"
- rm -rf "${WORKDIR}/${PN#votca-}"-tutorials*/CMake*
- doins -r "${WORKDIR}/${PN#votca-}"-tutorials*/*
- fi
-}
-
-pkg_postinst() {
- einfo
- einfo "Please read and cite:"
- einfo "VOTCA, J. Chem. Theory Comput. 5, 3211 (2009). "
- einfo "https://dx.doi.org/10.1021/ct900369w"
- einfo
-}
diff --git a/sci-chemistry/votca-csg/votca-csg-1.6.1.ebuild b/sci-chemistry/votca-csg/votca-csg-1.6.1.ebuild
deleted file mode 100644
index 28e577873597..000000000000
--- a/sci-chemistry/votca-csg/votca-csg-1.6.1.ebuild
+++ /dev/null
@@ -1,92 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-CMAKE_MAKEFILE_GENERATOR="ninja"
-
-inherit bash-completion-r1 cmake-utils multilib
-
-IUSE="doc examples extras +gromacs hdf5"
-PDEPEND="extras? ( ~sci-chemistry/${PN}apps-${PV} )"
-if [ "${PV}" != "9999" ]; then
- SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
- doc? ( https://github.com/${PN/-//}-manual/releases/download/v${PV}/${PN}-manual-${PV}.pdf )
- examples? ( https://github.com/${PN/-//}-tutorials/archive/v${PV}.tar.gz -> ${PN}-tutorials-${PV}.tar.gz )"
- KEYWORDS="~amd64 ~x86 ~amd64-linux"
- S="${WORKDIR}/${P#votca-}"
-else
- inherit git-r3
- EGIT_REPO_URI="https://github.com/${PN/-//}.git"
- KEYWORDS="~amd64 ~x86"
- PDEPEND="${PDEPEND} doc? ( ~app-doc/${PN}-manual-${PV} )"
-fi
-
-DESCRIPTION="Votca coarse-graining engine"
-HOMEPAGE="http://www.votca.org"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-
-RDEPEND="
- ~sci-libs/votca-tools-${PV}
- >=dev-cpp/eigen-3.3
- gromacs? ( sci-chemistry/gromacs:= )
- hdf5? ( sci-libs/hdf5 )
- dev-lang/perl
- app-shells/bash:*"
-
-DEPEND="${RDEPEND}
- >=app-text/txt2tags-2.5
- virtual/pkgconfig"
-
-DOCS=( README.md NOTICE CHANGELOG.md )
-
-src_unpack() {
- if [[ ${PV} != *9999 ]]; then
- default
- else
- git-r3_src_unpack
- if use examples; then
- EGIT_REPO_URI="https://github.com/${PN/-//}-tutorials.git"
- EGIT_BRANCH="master"
- EGIT_CHECKOUT_DIR="${WORKDIR}/${PN#votca-}-tutorials"\
- git-r3_src_unpack
- fi
- fi
-}
-
-src_configure() {
- mycmakeargs=(
- -DWITH_GMX=$(usex gromacs)
- -DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex '!hdf5')
- -DWITH_RC_FILES=OFF
- )
- cmake-utils_src_configure
-}
-
-src_install() {
- cmake-utils_src_install
- newbashcomp "${ED}"/usr/share/votca/rc/csg-completion.bash csg_call
- for i in "${ED}"/usr/bin/csg_*; do
- [[ ${i} = *csg_call ]] && continue
- bashcomp_alias csg_call "${i##*/}"
- done
- if use doc; then
- [[ ${PV} != *9999* ]] && dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
- fi
- if use examples; then
- insinto "/usr/share/doc/${PF}/tutorials"
- docompress -x "/usr/share/doc/${PF}/tutorials"
- rm -rf "${WORKDIR}/${PN#votca-}"-tutorials*/CMake*
- doins -r "${WORKDIR}/${PN#votca-}"-tutorials*/*
- fi
-}
-
-pkg_postinst() {
- einfo
- einfo "Please read and cite:"
- einfo "VOTCA, J. Chem. Theory Comput. 5, 3211 (2009). "
- einfo "https://dx.doi.org/10.1021/ct900369w"
- einfo
-}
diff --git a/sci-chemistry/votca-csg/votca-csg-1.6.2.ebuild b/sci-chemistry/votca-csg/votca-csg-1.6.2.ebuild
deleted file mode 100644
index 5ee29ea5b79f..000000000000
--- a/sci-chemistry/votca-csg/votca-csg-1.6.2.ebuild
+++ /dev/null
@@ -1,92 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-CMAKE_MAKEFILE_GENERATOR="ninja"
-
-inherit bash-completion-r1 cmake multilib
-
-IUSE="doc examples extras +gromacs hdf5"
-PDEPEND="extras? ( ~sci-chemistry/${PN}apps-${PV} )"
-if [ "${PV}" != "9999" ]; then
- SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
- doc? ( https://github.com/${PN/-//}-manual/releases/download/v${PV}/${PN}-manual-${PV}.pdf )
- examples? ( https://github.com/${PN/-//}-tutorials/archive/v${PV}.tar.gz -> ${PN}-tutorials-${PV}.tar.gz )"
- KEYWORDS="~amd64 ~x86 ~amd64-linux"
- S="${WORKDIR}/${P#votca-}"
-else
- inherit git-r3
- EGIT_REPO_URI="https://github.com/${PN/-//}.git"
- KEYWORDS=""
- PDEPEND="${PDEPEND} doc? ( ~app-doc/${PN}-manual-${PV} )"
-fi
-
-DESCRIPTION="Votca coarse-graining engine"
-HOMEPAGE="http://www.votca.org"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-
-RDEPEND="
- ~sci-libs/votca-tools-${PV}
- >=dev-cpp/eigen-3.3
- gromacs? ( sci-chemistry/gromacs:= )
- hdf5? ( sci-libs/hdf5 )
- dev-lang/perl
- app-shells/bash:*"
-
-DEPEND="${RDEPEND}
- >=app-text/txt2tags-2.5
- virtual/pkgconfig"
-
-DOCS=( README.md NOTICE CHANGELOG.md )
-
-src_unpack() {
- if [[ ${PV} != *9999 ]]; then
- default
- else
- git-r3_src_unpack
- if use examples; then
- EGIT_REPO_URI="https://github.com/${PN/-//}-tutorials.git"
- EGIT_BRANCH="master"
- EGIT_CHECKOUT_DIR="${WORKDIR}/${PN#votca-}-tutorials"\
- git-r3_src_unpack
- fi
- fi
-}
-
-src_configure() {
- mycmakeargs=(
- -DWITH_GMX=$(usex gromacs)
- -DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex '!hdf5')
- -DWITH_RC_FILES=OFF
- )
- cmake_src_configure
-}
-
-src_install() {
- cmake_src_install
- newbashcomp "${ED}"/usr/share/votca/rc/csg-completion.bash csg_call
- for i in "${ED}"/usr/bin/csg_*; do
- [[ ${i} = *csg_call ]] && continue
- bashcomp_alias csg_call "${i##*/}"
- done
- if use doc; then
- [[ ${PV} != *9999* ]] && dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
- fi
- if use examples; then
- insinto "/usr/share/doc/${PF}/tutorials"
- docompress -x "/usr/share/doc/${PF}/tutorials"
- rm -rf "${WORKDIR}/${PN#votca-}"-tutorials*/CMake*
- doins -r "${WORKDIR}/${PN#votca-}"-tutorials*/*
- fi
-}
-
-pkg_postinst() {
- einfo
- einfo "Please read and cite:"
- einfo "VOTCA, J. Chem. Theory Comput. 5, 3211 (2009). "
- einfo "https://dx.doi.org/10.1021/ct900369w"
- einfo
-}
diff --git a/sci-chemistry/votca-csg/votca-csg-1.6.3.ebuild b/sci-chemistry/votca-csg/votca-csg-1.6.3.ebuild
deleted file mode 100644
index 5ee29ea5b79f..000000000000
--- a/sci-chemistry/votca-csg/votca-csg-1.6.3.ebuild
+++ /dev/null
@@ -1,92 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-CMAKE_MAKEFILE_GENERATOR="ninja"
-
-inherit bash-completion-r1 cmake multilib
-
-IUSE="doc examples extras +gromacs hdf5"
-PDEPEND="extras? ( ~sci-chemistry/${PN}apps-${PV} )"
-if [ "${PV}" != "9999" ]; then
- SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
- doc? ( https://github.com/${PN/-//}-manual/releases/download/v${PV}/${PN}-manual-${PV}.pdf )
- examples? ( https://github.com/${PN/-//}-tutorials/archive/v${PV}.tar.gz -> ${PN}-tutorials-${PV}.tar.gz )"
- KEYWORDS="~amd64 ~x86 ~amd64-linux"
- S="${WORKDIR}/${P#votca-}"
-else
- inherit git-r3
- EGIT_REPO_URI="https://github.com/${PN/-//}.git"
- KEYWORDS=""
- PDEPEND="${PDEPEND} doc? ( ~app-doc/${PN}-manual-${PV} )"
-fi
-
-DESCRIPTION="Votca coarse-graining engine"
-HOMEPAGE="http://www.votca.org"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-
-RDEPEND="
- ~sci-libs/votca-tools-${PV}
- >=dev-cpp/eigen-3.3
- gromacs? ( sci-chemistry/gromacs:= )
- hdf5? ( sci-libs/hdf5 )
- dev-lang/perl
- app-shells/bash:*"
-
-DEPEND="${RDEPEND}
- >=app-text/txt2tags-2.5
- virtual/pkgconfig"
-
-DOCS=( README.md NOTICE CHANGELOG.md )
-
-src_unpack() {
- if [[ ${PV} != *9999 ]]; then
- default
- else
- git-r3_src_unpack
- if use examples; then
- EGIT_REPO_URI="https://github.com/${PN/-//}-tutorials.git"
- EGIT_BRANCH="master"
- EGIT_CHECKOUT_DIR="${WORKDIR}/${PN#votca-}-tutorials"\
- git-r3_src_unpack
- fi
- fi
-}
-
-src_configure() {
- mycmakeargs=(
- -DWITH_GMX=$(usex gromacs)
- -DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex '!hdf5')
- -DWITH_RC_FILES=OFF
- )
- cmake_src_configure
-}
-
-src_install() {
- cmake_src_install
- newbashcomp "${ED}"/usr/share/votca/rc/csg-completion.bash csg_call
- for i in "${ED}"/usr/bin/csg_*; do
- [[ ${i} = *csg_call ]] && continue
- bashcomp_alias csg_call "${i##*/}"
- done
- if use doc; then
- [[ ${PV} != *9999* ]] && dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
- fi
- if use examples; then
- insinto "/usr/share/doc/${PF}/tutorials"
- docompress -x "/usr/share/doc/${PF}/tutorials"
- rm -rf "${WORKDIR}/${PN#votca-}"-tutorials*/CMake*
- doins -r "${WORKDIR}/${PN#votca-}"-tutorials*/*
- fi
-}
-
-pkg_postinst() {
- einfo
- einfo "Please read and cite:"
- einfo "VOTCA, J. Chem. Theory Comput. 5, 3211 (2009). "
- einfo "https://dx.doi.org/10.1021/ct900369w"
- einfo
-}
diff --git a/sci-chemistry/votca-csg/votca-csg-1.6_rc1.ebuild b/sci-chemistry/votca-csg/votca-csg-1.6_rc1.ebuild
deleted file mode 100644
index 30be4d702862..000000000000
--- a/sci-chemistry/votca-csg/votca-csg-1.6_rc1.ebuild
+++ /dev/null
@@ -1,92 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-CMAKE_MAKEFILE_GENERATOR="ninja"
-
-inherit bash-completion-r1 cmake-utils multilib
-
-IUSE="doc examples extras +gromacs hdf5"
-PDEPEND="extras? ( ~sci-chemistry/${PN}apps-${PV} )"
-if [ "${PV}" != "9999" ]; then
- SRC_URI="https://github.com/${PN/-//}/archive/v${PV}.tar.gz -> ${P}.tar.gz
- doc? ( https://github.com/${PN/-//}-manual/releases/download/v${PV}/${PN}-manual-${PV}.pdf )
- examples? ( https://github.com/${PN/-//}-tutorials/archive/v${PV}.tar.gz -> ${PN}-tutorials-${PV}.tar.gz )"
- KEYWORDS="~amd64 ~x86 ~amd64-linux"
- S="${WORKDIR}/${P#votca-}"
-else
- inherit git-r3
- EGIT_REPO_URI="https://github.com/${PN/-//}.git"
- KEYWORDS=""
- PDEPEND="${PDEPEND} doc? ( ~app-doc/${PN}-manual-${PV} )"
-fi
-
-DESCRIPTION="Votca coarse-graining engine"
-HOMEPAGE="http://www.votca.org"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-
-RDEPEND="
- ~sci-libs/votca-tools-${PV}
- >=dev-cpp/eigen-3.3
- gromacs? ( sci-chemistry/gromacs:= )
- hdf5? ( sci-libs/hdf5 )
- dev-lang/perl
- app-shells/bash:*"
-
-DEPEND="${RDEPEND}
- >=app-text/txt2tags-2.5
- virtual/pkgconfig"
-
-DOCS=( README.md NOTICE CHANGELOG.md )
-
-src_unpack() {
- if [[ ${PV} != *9999 ]]; then
- default
- else
- git-r3_src_unpack
- if use examples; then
- EGIT_REPO_URI="https://github.com/${PN/-//}-tutorials.git"
- EGIT_BRANCH="master"
- EGIT_CHECKOUT_DIR="${WORKDIR}/${PN#votca-}-tutorials"\
- git-r3_src_unpack
- fi
- fi
-}
-
-src_configure() {
- mycmakeargs=(
- -DWITH_GMX=$(usex gromacs)
- -DCMAKE_DISABLE_FIND_PACKAGE_HDF5=$(usex '!hdf5')
- -DWITH_RC_FILES=OFF
- )
- cmake-utils_src_configure
-}
-
-src_install() {
- cmake-utils_src_install
- newbashcomp "${ED}"/usr/share/votca/rc/csg-completion.bash csg_call
- for i in "${ED}"/usr/bin/csg_*; do
- [[ ${i} = *csg_call ]] && continue
- bashcomp_alias csg_call "${i##*/}"
- done
- if use doc; then
- [[ ${PV} != *9999* ]] && dodoc "${DISTDIR}/${PN}-manual-${PV}.pdf"
- fi
- if use examples; then
- insinto "/usr/share/doc/${PF}/tutorials"
- docompress -x "/usr/share/doc/${PF}/tutorials"
- rm -rf "${WORKDIR}/${PN#votca-}"-tutorials*/CMake*
- doins -r "${WORKDIR}/${PN#votca-}"-tutorials*/*
- fi
-}
-
-pkg_postinst() {
- einfo
- einfo "Please read and cite:"
- einfo "VOTCA, J. Chem. Theory Comput. 5, 3211 (2009). "
- einfo "https://dx.doi.org/10.1021/ct900369w"
- einfo
-}