sci-mathematics/singular: bump to 4.0.3 and EAPI=6

Also fixes file collision in bug 591556

Package-Manager: portage-2.3.0

4 files changed, 439 insertions, 0 deletions

diff --git a/sci-mathematics/singular/Manifest b/sci-mathematics/singular/Manifest
index 6d7beb859000..8b1b1e5ac6ba 100644
--- a/sci-mathematics/singular/Manifest
+++ b/sci-mathematics/singular/Manifest
@@ -2,3 +2,5 @@ DIST Singular-3-1-6-share.tar.gz 10620177 SHA256 c74a97b7eb8ed53417682637fe11c24
 DIST Singular-3-1-6.tar.gz 25535111 SHA256 7956a17a0b5d428fea25bc0bc6c19c753748fb98bb2926c49b9fbcbec94172ff SHA512 103a10dd474d93cceb678bcef1a4aae5ec693cb9e68c9d63a7536929b738a0127501ee145a79cc3b9ddfa4bd1ca0f05e640eeb3b0fbdb60de4f56aa5beacc213 WHIRLPOOL 71ef6d505f7c8b2eeacd46666640d7b3c79f75d6c2c858b135553b1fb3a9dd7d88df74924009468c32aa4aa748b88ccb7762010ab4d36eec420a07fd36e8dd22
 DIST singular-4.0.2-share.tar.gz 8789162 SHA256 fe81cb100f3b73b159eb4a8122a29bc0f7705ef6f62ad55b68b5582c1ec0642d SHA512 068827df04a5d1b4407dbaab1296d0120071dc109b749037b02263d51906852a5c2c1ef321733953a181c2d3d0fe799c197ef0af3b9341810ecf31a5324e0a25 WHIRLPOOL 615487e95e32d9f07552e92ebcd46e3071d110dd31e7d980b01340d22a5205ba2d771532fad1bf44863a38820428157284a171e0b901861fda6e51482d546adc
 DIST singular-4.0.2.tar.gz 8635172 SHA256 c105a2c8ace0b3c9189b782ed63660ce235407d0160907c2cafc2128d36d8cb7 SHA512 4543a45839ce8adc45e3b2edd84a6e398b7ba157da1eda050dbce2a8b20333eb0c63433e3e7eaf59d76bf6bcb65c1b1611bfc08c25fd493c88e2f06624898e3d WHIRLPOOL fe30bc87c6b403b2e30bd1c016aeeb015c2a64a63d87b81536dc53a2555ac068f3e0c6d8763775d8be5e5e1a935aadab1c86b603cbb698234a19cc9cfffac282
+DIST singular-4.0.3-share.tar.gz 6633256 SHA256 391cb9cd7626ee745f269a025530b5b3a33794e7862cf1afd7ca9d109321827a SHA512 5f8ae4ecd22a3470e5f00393e03079936d7ed334f44ae056ed1eb1719054afc4371b03e920b598033605600c843dc39cb6b01308505323e2c084dfe1f7a1b94a WHIRLPOOL b00694bc2d93c9ef6d299d18e9e65133656dbb427aa50de730d78e5c0501332c5a4b3797edf09750179ef4efd980401f46bb5f1beee37bf7474dc6323b9467bd
+DIST singular-4.0.3.tar.gz 12615042 SHA256 4ccf70a9efcf087f436bfea9c09d61a554eb8e7638697093a55998ef846f316e SHA512 781227997c510829b02c969259d627572c0b62aa152c9ef623ff27de5b2df0c8e024f086740b89ca8f96b6e3f7def04f8d62ca79adb199d6249ade9b8cbb06ab WHIRLPOOL 587ff208fb7b03edb3398e0a4b8cf54cfa9ddee6a8a350c5273a4f6074a6e0a3f06e35ad96b8ddb58ef5dd9036b45c81552a925681ecb4df72d895afc010eb0d
diff --git a/sci-mathematics/singular/files/singular-4.0.3-fix-destdir.patch b/sci-mathematics/singular/files/singular-4.0.3-fix-destdir.patch
new file mode 100644
index 000000000000..caeed33f1fc3
--- /dev/null
+++ b/sci-mathematics/singular/files/singular-4.0.3-fix-destdir.patch
@@ -0,0 +1,26 @@
+From 7eac42b467723a83a951218be53785411be3dbc4 Mon Sep 17 00:00:00 2001
+From: jgmbenoit <quatermaster@rezozer.net>
+Date: Thu, 28 Apr 2016 05:47:53 +0000
+Subject: [PATCH] automake: install-data-local: missing DESTDIR prefix
+
+---
+ Makefile.am | 6 +++---
+ 1 file changed, 3 insertions(+), 3 deletions(-)
+
+diff --git a/Makefile.am b/Makefile.am
+index 32778f7..24dd251 100644
+--- a/Makefile.am
++++ b/Makefile.am
+@@ -17,9 +17,9 @@ dist-hook:
+ 	$(srcdir)/git-version-gen $(srcdir)/.tarball-git-version > $(distdir)/.tarball-git-version
+ 
+ install-data-local:
+-	-cat ${top_srcdir}/doc/doc.tbz2| (cd $(datadir)/singular;tar jxf -)
+-	-mkdir $(datadir)/info
+-	-mv  $(datadir)/singular/singular.hlp  $(datadir)/info/.
++	-cat ${top_srcdir}/doc/doc.tbz2| (cd $(DESTDIR)$(datadir)/singular; tar jxf -)
++	-mkdir $(DESTDIR)$(datadir)/info
++	-mv  $(DESTDIR)$(datadir)/singular/singular.hlp  $(DESTDIR)$(datadir)/info/.
+ 
+ configheaderdir = ${includedir}/singular
+ nodist_configheader_HEADERS = singularconfig.h
diff --git a/sci-mathematics/singular/files/singular-4.0.3-fix-resources-name.patch b/sci-mathematics/singular/files/singular-4.0.3-fix-resources-name.patch
new file mode 100644
index 000000000000..bcda4ced6472
--- /dev/null
+++ b/sci-mathematics/singular/files/singular-4.0.3-fix-resources-name.patch
@@ -0,0 +1,307 @@
+From a3a6a07858b7e91c4c8a3c8d07e53957a8547af2 Mon Sep 17 00:00:00 2001
+From: Hans Schoenemann <hannes@mathematik.uni-kl.de>
+Date: Thu, 1 Sep 2016 10:48:08 +0200
+Subject: [PATCH] change library name: libresources -> libsingular_resources
+
+---
+ Singular/Makefile.am               |  4 ++--
+ autogen.sh                         |  1 +
+ factory/configure.ac               |  8 ++++----
+ gfanlib/configure.ac               |  2 +-
+ libpolys/configure.ac              |  8 ++++----
+ m4/options.m4                      | 10 +++++-----
+ resources/Makefile.am              | 18 +++++++++---------
+ resources/configure.ac             |  6 +++---
+ resources/feFopen.cc               |  2 +-
+ resources/feResource.cc            |  2 +-
+ resources/omFindExec.c             |  2 +-
+ resources/resources.pc.in          | 17 -----------------
+ resources/singular_resources.pc.in | 17 +++++++++++++++++
+ 13 files changed, 49 insertions(+), 48 deletions(-)
+ delete mode 100644 resources/resources.pc.in
+ create mode 100644 resources/singular_resources.pc.in
+
+diff --git a/Singular/Makefile.am b/Singular/Makefile.am
+index e2bcc23..be84a08 100644
+--- a/Singular/Makefile.am
++++ b/Singular/Makefile.am
+@@ -176,7 +176,7 @@ ESingular_CPPFLAGS = ${AM_CPPFLAGS} -DESINGULAR -DPROTO
+ # ESingular_LDFLAGS = -static ${AM_LDFLAGS}
+ ESingular_LDADD =  ${top_builddir}/libpolys/reporter/libreporter.la \
+ ${top_builddir}/libpolys/misc/libmisc.la ${top_builddir}/omalloc/libomalloc.la \
+-${top_builddir}/resources/libresources.la
++${top_builddir}/resources/libsingular_resources.la
+ 
+ 
+ ESingular_SOURCES = emacs.cc fegetopt.c fegetopt.h feOptES.inc feOpt.cc
+@@ -186,7 +186,7 @@ TSingular_CPPFLAGS = ${AM_CPPFLAGS} -DTSINGULAR -DPROTO
+ # TSingular_LDFLAGS = -static ${AM_LDFLAGS}
+ TSingular_LDADD = ${top_builddir}/libpolys/reporter/libreporter.la \
+ ${top_builddir}/libpolys/misc/libmisc.la ${top_builddir}/omalloc/libomalloc.la \
+-${top_builddir}/resources/libresources.la
++${top_builddir}/resources/libsingular_resources.la
+ 
+ TSingular_SOURCES = emacs.cc fegetopt.c fegetopt.h feOptTS.inc feOpt.cc
+ # utils.cc utils.h
+diff --git a/autogen.sh b/autogen.sh
+index d027997..0d09c08 100755
+--- a/autogen.sh
++++ b/autogen.sh
+@@ -4,6 +4,7 @@ cd `dirname "$0"`
+ 
+ # -d --warnings=all
+ autoreconf  -v -f -i
++find . -name configure -exec sed -i "s/-g -O2/-g/g" {} \; -print
+ 
+ cd -
+ 
+diff --git a/factory/configure.ac b/factory/configure.ac
+index 7ea255b..a9caf73 100644
+--- a/factory/configure.ac
++++ b/factory/configure.ac
+@@ -120,10 +120,10 @@ AM_CONDITIONAL(
+     [WITH_PARSER_FOR_CANONICAL_FORM],
+     [test "x$enable_streamio" = xyes])
+ 
+-AC_ARG_VAR( [RESOURCES_INCLUDES], [INCLUDES for libresources] )
+-AC_ARG_VAR( [RESOURCES_LIBS], [LIBS for libresources] )
++AC_ARG_VAR( [RESOURCES_INCLUDES], [INCLUDES for libsingular_resources] )
++AC_ARG_VAR( [RESOURCES_LIBS], [LIBS for libsingular_resources] )
+ 
+-AC_MSG_CHECKING(whether libresources should be used)
++AC_MSG_CHECKING(whether libsingular_resources should be used)
+ if test "x$with_Singular" = xyes;
+ then
+   AC_MSG_RESULT(yes)
+@@ -134,7 +134,7 @@ then
+   AC_MSG_CHECKING([  RESOURCES_LIBS?..])
+   AC_MSG_RESULT(${RESOURCES_LIBS:-unset})
+ 
+-  PKG_REQUIRE="$PKG_REQUIRE resources"
++  PKG_REQUIRE="$PKG_REQUIRE singular_resources"
+   AC_SUBST(PKG_REQUIRE)
+ else
+   AC_MSG_RESULT(no)
+diff --git a/gfanlib/configure.ac b/gfanlib/configure.ac
+index 015134c..d3d2cd7 100644
+--- a/gfanlib/configure.ac
++++ b/gfanlib/configure.ac
+@@ -2,7 +2,7 @@
+ # Process this file with autoconf to produce a configure script.
+ 
+ AC_PREREQ([2.63])
+-AC_INIT([libgfan], [0.1], [ren@mathematik.uni-kl.de])
++AC_INIT([libgfan], [0.6], [ren@mathematik.uni-kl.de])
+ AC_CONFIG_MACRO_DIR([../m4])
+ AC_CONFIG_AUX_DIR([../build-aux])
+ AC_CONFIG_SRCDIR([gfanlib.h])
+diff --git a/libpolys/configure.ac b/libpolys/configure.ac
+index 049e44d..4b2f1ae 100644
+--- a/libpolys/configure.ac
++++ b/libpolys/configure.ac
+@@ -90,10 +90,10 @@ SING_CHECK_OMALLOC()
+ 
+ ENABLE_RESOURCES="yes"
+ 
+-AC_ARG_VAR( [RESOURCES_INCLUDES], [INCLUDES for libresources] )
+-AC_ARG_VAR( [RESOURCES_LIBS], [LIBS for libresources] )
++AC_ARG_VAR( [RESOURCES_INCLUDES], [INCLUDES for libsingular_resources] )
++AC_ARG_VAR( [RESOURCES_LIBS], [LIBS for libsingular_resources] )
+ 
+-AC_MSG_CHECKING(whether libresources should be used)
++AC_MSG_CHECKING(whether libsingular_resources should be used)
+ 
+ if test "x$ENABLE_RESOURCES" = xyes;
+ then
+@@ -105,7 +105,7 @@ then
+   AC_MSG_CHECKING([  RESOURCES_LIBS?..])
+   AC_MSG_RESULT(${RESOURCES_LIBS:-unset})
+ 
+-  PKG_REQUIRE="$PKG_REQUIRE resources"
++  PKG_REQUIRE="$PKG_REQUIRE singular_resources"
+   AC_SUBST(PKG_REQUIRE)
+ else
+   AC_MSG_RESULT(no)
+diff --git a/m4/options.m4 b/m4/options.m4
+index 31b86e4..066dc4d 100644
+--- a/m4/options.m4
++++ b/m4/options.m4
+@@ -150,19 +150,19 @@ AC_DEFUN([SING_USE_OMALLOC],
+ 
+ AC_DEFUN([SING_USE_RESOURCES],
+ [
+- AC_ARG_ENABLE(resources,
+-  [AS_HELP_STRING([--disable-resources], [do NOT use libresources within the factory])],
++ AC_ARG_ENABLE(singular_resources,
++  [AS_HELP_STRING([--disable-singular_resources], [do NOT use libsingular_resources within the factory])],
+   [if test "x$enableval"  = "xyes"; then
+     ENABLE_RESOURCES=yes
+    fi],
+     ENABLE_RESOURCES=yes)
+ 
+- AC_MSG_CHECKING(whether to use libresources in factory and co.)
++ AC_MSG_CHECKING(whether to use libsingular_resources in factory and co.)
+  if test "x$ENABLE_RESOURCES" = xyes; then
+   AC_MSG_RESULT(yes)
+   RESOURCES_INCLUDES="-I$ac_abs_top_srcdir "
+ 
+-  RESOURCES_LIBS="$ac_abs_top_builddir/resources/libresources.la"
++  RESOURCES_LIBS="$ac_abs_top_builddir/resources/libsingular_resources.la"
+ 
+   AC_SUBST(RESOURCES_INCLUDES)
+   AC_SUBST(RESOURCES_LIBS)
+@@ -171,7 +171,7 @@ AC_DEFUN([SING_USE_RESOURCES],
+ 
+   ac_configure_args="$ac_configure_args $ENABLE_ARG"
+ 
+-  PKG_REQUIRE="$PKG_REQUIRE resources"
++  PKG_REQUIRE="$PKG_REQUIRE singular_resources"
+   AC_SUBST(PKG_REQUIRE)
+  else
+   AC_MSG_RESULT(no)
+diff --git a/resources/Makefile.am b/resources/Makefile.am
+index fa69ccc..934175b 100644
+--- a/resources/Makefile.am
++++ b/resources/Makefile.am
+@@ -1,24 +1,24 @@
+ ACLOCAL_AMFLAGS = -I ../m4
+ 
+-libresources_LTLIBRARIES = libresources.la
++libsingular_resources_LTLIBRARIES = libsingular_resources.la
+ 
+-libresourcesdir = $(libdir)
++libsingular_resourcesdir = $(libdir)
+ 
+ 
+ AM_CPPFLAGS = -I${top_srcdir} -I${top_builddir}
+ 
+ 
+ SOURCES  = omFindExec.c feResource.cc feFopen.cc
+-libresources_la_SOURCES   = $(SOURCES)
++libsingular_resources_la_SOURCES   = $(SOURCES)
+ 
+-libresources_la_LDFLAGS   = -release ${PACKAGE_VERSION}
++libsingular_resources_la_LDFLAGS   = -release ${PACKAGE_VERSION}
+ 
+-libresources_includedir  =$(includedir)/resources
++libsingular_resources_includedir  =$(includedir)/resources
+ 
+-libresources_include_HEADERS = omFindExec.h feResource.h feFopen.h
++libsingular_resources_include_HEADERS = omFindExec.h feResource.h feFopen.h
+ 
+-nodist_libresources_include_HEADERS = resourcesconfig.h
+-DISTCLEANFILES = $(nodist_libresources_include_HEADERS)
++nodist_libsingular_resources_include_HEADERS = singular_resourcesconfig.h
++DISTCLEANFILES = $(nodist_libsingular_resources_include_HEADERS)
+ 
+ pkgconfigdir = $(libdir)/pkgconfig
+-pkgconfig_DATA = resources.pc
++pkgconfig_DATA = singular_resources.pc
+diff --git a/resources/configure.ac b/resources/configure.ac
+index bc5f294..212a1d5 100644
+--- a/resources/configure.ac
++++ b/resources/configure.ac
+@@ -1,4 +1,4 @@
+-AC_INIT([resources], [4.0.3])
++AC_INIT([singular_resources], [4.0.3])
+ 
+ AC_CONFIG_MACRO_DIR([../m4])
+ AC_CONFIG_AUX_DIR([../build-aux])
+@@ -14,7 +14,7 @@ dnl Check if build env is sane
+ AM_SANITY_CHECK
+ 
+ # Add pre'prefixed config
+-AX_PREFIX_CONFIG_H([resourcesconfig.h],[],[_config.h])
++AX_PREFIX_CONFIG_H([singular_resourcesconfig.h],[],[_config.h])
+ 
+ SING_RESET_FLAGS()
+ SING_CHECK_SET_ARGS()
+@@ -70,5 +70,5 @@ AX_RECURSIVE_EVAL([[$]datadir], [config_datadir])
+ AX_NORMALIZE_PATH([config_datadir],['/'])
+ AC_DEFINE_UNQUOTED([DATA_DIR],"$config_datadir",[datadir])
+ 
+-AC_CONFIG_FILES([resources.pc Makefile])
++AC_CONFIG_FILES([singular_resources.pc Makefile])
+ AC_OUTPUT
+diff --git a/resources/feFopen.cc b/resources/feFopen.cc
+index 98cfd44..10800a0 100644
+--- a/resources/feFopen.cc
++++ b/resources/feFopen.cc
+@@ -1,4 +1,4 @@
+-#include "resourcesconfig.h"
++#include "singular_resourcesconfig.h"
+ #include "feResource.h"
+ #include "feFopen.h"
+ 
+diff --git a/resources/feResource.cc b/resources/feResource.cc
+index 49a6855..a3accf9 100644
+--- a/resources/feResource.cc
++++ b/resources/feResource.cc
+@@ -5,7 +5,7 @@
+ * ABSTRACT: management of resources
+ */
+ 
+-#include "resourcesconfig.h"
++#include "singular_resourcesconfig.h"
+ #include "feResource.h"
+ #include "omFindExec.h"
+ 
+diff --git a/resources/omFindExec.c b/resources/omFindExec.c
+index e79f2c8..1d5852a 100644
+--- a/resources/omFindExec.c
++++ b/resources/omFindExec.c
+@@ -6,7 +6,7 @@
+  *******************************************************************/
+ 
+ 
+-#include "resourcesconfig.h"
++#include "singular_resourcesconfig.h"
+ 
+ 
+ #if defined(HAVE_UNISTD_H) && defined(STDC_HEADERS)
+diff --git a/resources/resources.pc.in b/resources/resources.pc.in
+deleted file mode 100644
+index d040056..0000000
+--- a/resources/resources.pc.in
++++ /dev/null
+@@ -1,17 +0,0 @@
+-prefix=@prefix@
+-exec_prefix=@exec_prefix@
+-libdir=@libdir@
+-includedir=@includedir@
+-
+-Name: @PACKAGE@
+-Description: The Singular resources manager
+-Version: @PACKAGE_VERSION@
+-URL: https://github.com/Singular/Sources/tree/spielwiese/@PACKAGE@
+-
+-# Requires:
+-# Conflicts:
+-
+-Cflags: -I${includedir} @SINGULAR_CFLAGS@
+-Libs: -L${libdir} -l@PACKAGE@
+-# Libs.private:
+-
+diff --git a/resources/singular_resources.pc.in b/resources/singular_resources.pc.in
+new file mode 100644
+index 0000000..d040056
+--- /dev/null
++++ b/resources/singular_resources.pc.in
+@@ -0,0 +1,17 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++includedir=@includedir@
++
++Name: @PACKAGE@
++Description: The Singular resources manager
++Version: @PACKAGE_VERSION@
++URL: https://github.com/Singular/Sources/tree/spielwiese/@PACKAGE@
++
++# Requires:
++# Conflicts:
++
++Cflags: -I${includedir} @SINGULAR_CFLAGS@
++Libs: -L${libdir} -l@PACKAGE@
++# Libs.private:
++
diff --git a/sci-mathematics/singular/singular-4.0.3.ebuild b/sci-mathematics/singular/singular-4.0.3.ebuild
new file mode 100644
index 000000000000..d198175c8a2a
--- /dev/null
+++ b/sci-mathematics/singular/singular-4.0.3.ebuild
@@ -0,0 +1,104 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit autotools elisp-common flag-o-matic multilib prefix versionator
+
+MY_PN=Singular
+MY_PV=$(replace_all_version_separators '.')
+# Consistency is different...
+MY_DIR2=$(get_version_component_range 1-3 ${PV})
+MY_DIR=$(replace_all_version_separators '-' ${MY_DIR2})
+# This is where the share tarball unpacks to
+
+DESCRIPTION="Computer algebra system for polynomial computations"
+HOMEPAGE="http://www.singular.uni-kl.de/"
+SRC_URI="http://www.mathematik.uni-kl.de/ftp/pub/Math/${MY_PN}/SOURCES/${MY_DIR}/${PN}-${MY_PV}.tar.gz
+		 http://www.mathematik.uni-kl.de/ftp/pub/Math/${MY_PN}/SOURCES/${MY_DIR}/${PN}-${MY_PV}-share.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~x86-linux ~x86-macos"
+IUSE="boost doc emacs examples python +readline"
+
+RDEPEND="dev-libs/gmp:0
+	>=dev-libs/ntl-5.5.1
+	emacs? ( >=virtual/emacs-22 )
+	sci-mathematics/flint
+	sci-mathematics/4ti2
+	sci-libs/cddlib"
+
+DEPEND="${RDEPEND}
+	dev-lang/perl
+	boost? ( dev-libs/boost )
+	readline? ( sys-libs/readline )"
+
+SITEFILE=60${PN}-gentoo.el
+
+S="${WORKDIR}/${PN}-${MY_DIR2}"
+
+pkg_setup() {
+	append-flags "-fPIC"
+	append-ldflags "-fPIC"
+	tc-export AR CC CPP CXX
+
+	# Ensure that >=emacs-22 is selected
+	if use emacs; then
+		elisp-need-emacs 22 || die "Emacs version too low"
+	fi
+}
+
+src_prepare () {
+	eapply "${FILESDIR}"/"${P}"-fix-resources-name.patch
+	eapply "${FILESDIR}"/"${P}"-fix-destdir.patch
+	eapply_user
+	# autoreconf everything since otherwise it assumes autmake-1.13 is installed
+	eautoreconf
+}
+
+src_configure() {
+	econf --with-gmp \
+		  --with-ntl \
+		  --with-flint \
+		  --enable-gfanlib \
+		  --disable-debug \
+		  --disable-doc \
+		  --enable-factory \
+		  --enable-libfac \
+		  --enable-IntegerProgramming \
+		  $(use_with python python embed) \
+		  $(use_with boost Boost) \
+		  $(use_enable emacs) \
+		  $(use_with readline) || die "configure failed"
+}
+
+src_compile() {
+	emake || die "emake failed"
+
+	if use emacs; then
+		cd "${S}"/emacs/
+		elisp-compile *.el || die "elisp-compile failed"
+	fi
+}
+
+pkg_postinst() {
+	einfo "The authors ask you to register as a SINGULAR user."
+	einfo "Please check the license file for details."
+
+	if use emacs; then
+		echo
+		ewarn "Please note that the ESingular emacs wrapper has been"
+		ewarn "removed in favor of full fledged singular support within"
+		ewarn "Gentoo's emacs infrastructure; i.e. just fire up emacs"
+		ewarn "and you should be good to go! See bug #193411 for more info."
+		echo
+	fi
+
+	use emacs && elisp-site-regen
+}
+
+pkg_postrm() {
+	use emacs && elisp-site-regen
+}