proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

5 files changed, 256 insertions, 0 deletions

diff --git a/sci-mathematics/topcom/Manifest b/sci-mathematics/topcom/Manifest
new file mode 100644
index 000000000000..f4ee9d06fecd
--- /dev/null
+++ b/sci-mathematics/topcom/Manifest
@@ -0,0 +1,2 @@
+DIST TOPCOM-0.17.4.tar.gz 8666508 SHA256 42f3ff4e04613009966a3e3cd942f1fb6aa7bc7439f54f20a0b81d1989f9fef1 SHA512 29cee145ee8ec1a63c0b1ec5d9e5f34a11084767405435eed515f864ba1094ca4566c92bbf7cf56914e3e455dd8bdf9746c0f7192a9455fe7852a65704a6009c WHIRLPOOL 4b5f18b8eee251470281a352a354a683b7f42c852cb47552e4227699d9570aee09cda9f9e84f9e7abc5b9e1997818437618776ed90a8667cb186143da6deab4b
+DIST TOPCOM-manual.html 19251 SHA256 b1c3b326044fdb512264fa2bde6fa10962fd276d43fcab71cb0dc8778378608e
diff --git a/sci-mathematics/topcom/files/topcom-0.17.4-buildsystem.patch b/sci-mathematics/topcom/files/topcom-0.17.4-buildsystem.patch
new file mode 100644
index 000000000000..e8546aa846dc
--- /dev/null
+++ b/sci-mathematics/topcom/files/topcom-0.17.4-buildsystem.patch
@@ -0,0 +1,105 @@
+ lib-src-reg/Makefile.am    |    8 +++-----
+ lib-src/Makefile.am        |    8 +++-----
+ src-reg/Makefile.am        |   12 +++++-------
+ src/Makefile.am            |   12 +++++-------
+ wrap-gmp-gmpxx/Makefile.am |    2 +-
+ 5 files changed, 17 insertions(+), 25 deletions(-)
+
+diff --git a/lib-src-reg/Makefile.am b/lib-src-reg/Makefile.am
+index 67c1dc9..202d6fa 100644
+--- a/lib-src-reg/Makefile.am
++++ b/lib-src-reg/Makefile.am
+@@ -10,11 +10,9 @@ SPXinterface.hh \
+ RegularityCheck.hh \
+ LPinterface.hh
+ 
+-INCLUDES        = -I../lib-src 
+-INCLUDES       += -I../wrap-gmp-gmpxx
+-INCLUDES       += -I../external/include
++INCLUDES        = -I$(top_srcdir)/lib-src 
++INCLUDES       += -I$(top_srcdir)/wrap-gmp-gmpxx
++INCLUDES       += -I$(top_srcdir)/external/include
+ INCLUDES       += -I$(includedir)
+ 
+ AM_CPPFLAGS     = -DVERBOSE -DGMPRATIONAL -ftemplate-depth-30
+-
+-AM_CXXFLAGS     = -O2
+diff --git a/lib-src/Makefile.am b/lib-src/Makefile.am
+index defed87..c94109c 100644
+--- a/lib-src/Makefile.am
++++ b/lib-src/Makefile.am
+@@ -88,11 +88,9 @@ VertexFacetTable.hh \
+ VertexFacetTableArray.hh \
+ VirtualChiro.hh
+ 
+-INCLUDES        = -I../lib-src-reg
+-INCLUDES       += -I../wrap-gmp-gmpxx
+-INCLUDES       += -I../external/include
++INCLUDES        = -I$(top_srcdir)/lib-src-reg
++INCLUDES       += -I$(top_srcdir)/wrap-gmp-gmpxx
++INCLUDES       += -I$(top_srcdir)/external/include
+ INCLUDES       += -I$(includedir)
+ 
+ AM_CPPFLAGS     = -DVERBOSE -DGMPRATIONAL -ftemplate-depth-35
+-
+-AM_CXXFLAGS     = -O2 -g
+diff --git a/src-reg/Makefile.am b/src-reg/Makefile.am
+index b0219a5..e9b00bc 100644
+--- a/src-reg/Makefile.am
++++ b/src-reg/Makefile.am
+@@ -2,15 +2,13 @@ bin_PROGRAMS = checkregularity
+ 
+ checkregularity_SOURCES = checkregularity.cc
+ 
+-LDADD           = ../lib-src-reg/libCHECKREG.a \
+-                  ../lib-src/libTOPCOM.a
++LDADD           = $(top_builddir)/lib-src-reg/libCHECKREG.a \
++                  $(top_builddir)/lib-src/libTOPCOM.a
+ 
+-INCLUDES        = -I../lib-src
+-INCLUDES       += -I../lib-src-reg
+-INCLUDES       += -I../wrap-gmp-gmpxx
++INCLUDES        = -I$(top_srcdir)/lib-src
++INCLUDES       += -I$(top_srcdir)/lib-src-reg
++INCLUDES       += -I$(top_srcdir)/wrap-gmp-gmpxx
+ INCLUDES       += -I$(includedir)
+ 
+ 
+ AM_CPPFLAGS     = -DVERBOSE -DGMPRATIONAL -ftemplate-depth-30
+-
+-AM_CXXFLAGS     = -O2
+diff --git a/src/Makefile.am b/src/Makefile.am
+index 5ba9b22..4c59202 100644
+--- a/src/Makefile.am
++++ b/src/Makefile.am
+@@ -85,14 +85,12 @@ santos_triang_SOURCES              = santos_triang.cc
+ santos_dim4_triang_SOURCES         = santos_dim4_triang.cc
+ santos_22_triang_SOURCES           = santos_22_triang.cc
+ 
+-LDADD           = ../lib-src/libTOPCOM.a \
+-                  ../lib-src-reg/libCHECKREG.a
++LDADD           = $(top_builddir)/lib-src/libTOPCOM.a \
++                  $(top_builddir)/lib-src-reg/libCHECKREG.a
+ 
+-INCLUDES        = -I../lib-src
+-INCLUDES       += -I../lib-src-reg
+-INCLUDES       += -I../wrap-gmp-gmpxx
++INCLUDES        = -I$(top_srcdir)/lib-src
++INCLUDES       += -I$(top_srcdir)/lib-src-reg
++INCLUDES       += -I$(top_srcdir)/wrap-gmp-gmpxx
+ INCLUDES       += -I$(includedir)
+ 
+ AM_CPPFLAGS     = -DVERBOSE -DGMPRATIONAL -ftemplate-depth-30
+-
+-AM_CXXFLAGS     = -O2
+diff --git a/wrap-gmp-gmpxx/Makefile.am b/wrap-gmp-gmpxx/Makefile.am
+index 383e003..d93a637 100644
+--- a/wrap-gmp-gmpxx/Makefile.am
++++ b/wrap-gmp-gmpxx/Makefile.am
+@@ -2,5 +2,5 @@ include_HEADERS = \
+ Integer.h \
+ Rational.h
+ 
+-INCLUDES        = -I../external/include
++INCLUDES        = -I$(top_srcdir)/external/include
+ INCLUDES       += -I$(includedir)
diff --git a/sci-mathematics/topcom/files/topcom-0.17.4-no-internal-libs.patch b/sci-mathematics/topcom/files/topcom-0.17.4-no-internal-libs.patch
new file mode 100644
index 000000000000..e9cffeec7440
--- /dev/null
+++ b/sci-mathematics/topcom/files/topcom-0.17.4-no-internal-libs.patch
@@ -0,0 +1,77 @@
+ Makefile.am         |    4 ----
+ configure.ac        |    6 +-----
+ src-reg/Makefile.am |    6 +-----
+ src/Makefile.am     |    6 +-----
+ 4 files changed, 3 insertions(+), 19 deletions(-)
+
+diff --git a/Makefile.am b/Makefile.am
+index 640652f..00ba26a 100644
+--- a/Makefile.am
++++ b/Makefile.am
+@@ -1,6 +1,2 @@
+ SUBDIRS      = wrap-gmp-gmpxx lib-src-reg lib-src src-reg src examples
+ EXTRA_DIST   = external/Makefile
+-EXTRA_DIST  += external/gmp-5.0.5.tar.bz2
+-EXTRA_DIST  += external/cddlib-0.94f-TOPCOM.tar.gz
+-EXTRA_DIST  += external/gmpxx-patch
+-
+diff --git a/configure.ac b/configure.ac
+index b737f27..ecd38ce 100644
+--- a/configure.ac
++++ b/configure.ac
+@@ -17,12 +17,8 @@ dnl Replace `main' with a function in -lstdc:
+ dnl AC_CHECK_LIB(stdc, main)
+ dnl Replace `main' with a function in -lstdc++:
+ dnl AC_CHECK_LIB(stdc++, main)
+-dnl Make libgmp:
+-make -C external gmp
+-dnl Make libcddgmp:
+-make -C external cdd
+ dnl Check for soplex:
+-AC_CHECK_LIB(soplex, main, , csh -c 'echo soplex not found: --soplex will not work.')
++AC_CHECK_LIB(soplex, main, , sh -c 'echo soplex not found: --soplex will not work.')
+ 
+ dnl Checks for header files.
+ AC_HEADER_STDC
+diff --git a/src-reg/Makefile.am b/src-reg/Makefile.am
+index c976e34..b0219a5 100644
+--- a/src-reg/Makefile.am
++++ b/src-reg/Makefile.am
+@@ -3,15 +3,11 @@ bin_PROGRAMS = checkregularity
+ checkregularity_SOURCES = checkregularity.cc
+ 
+ LDADD           = ../lib-src-reg/libCHECKREG.a \
+-                  ../lib-src/libTOPCOM.a \
+-                  ../external/lib/libcddgmp.a \
+-                  ../external/lib/libgmpxx.a \
+-                  ../external/lib/libgmp.a
++                  ../lib-src/libTOPCOM.a
+ 
+ INCLUDES        = -I../lib-src
+ INCLUDES       += -I../lib-src-reg
+ INCLUDES       += -I../wrap-gmp-gmpxx
+-INCLUDES       += -I../external/include
+ INCLUDES       += -I$(includedir)
+ 
+ 
+diff --git a/src/Makefile.am b/src/Makefile.am
+index 4c35135..5ba9b22 100644
+--- a/src/Makefile.am
++++ b/src/Makefile.am
+@@ -86,15 +86,11 @@ santos_dim4_triang_SOURCES         = santos_dim4_triang.cc
+ santos_22_triang_SOURCES           = santos_22_triang.cc
+ 
+ LDADD           = ../lib-src/libTOPCOM.a \
+-                  ../lib-src-reg/libCHECKREG.a \
+-                  ../external/lib/libcddgmp.a \
+-                  ../external/lib/libgmpxx.a \
+-                  ../external/lib/libgmp.a
++                  ../lib-src-reg/libCHECKREG.a
+ 
+ INCLUDES        = -I../lib-src
+ INCLUDES       += -I../lib-src-reg
+ INCLUDES       += -I../wrap-gmp-gmpxx
+-INCLUDES       += -I../external/include
+ INCLUDES       += -I$(includedir)
+ 
+ AM_CPPFLAGS     = -DVERBOSE -DGMPRATIONAL -ftemplate-depth-30
diff --git a/sci-mathematics/topcom/metadata.xml b/sci-mathematics/topcom/metadata.xml
new file mode 100644
index 000000000000..623d96beb1cf
--- /dev/null
+++ b/sci-mathematics/topcom/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>tomka@gentoo.org</email>
+		<name>Thomas Kahle</name>
+	</maintainer>
+	<herd>sci</herd>
+	<longdescription lang="en">
+TOPCOM is a package for computing Triangulations Of Point Configurations and Oriented Matroids
+</longdescription>
+</pkgmetadata>
diff --git a/sci-mathematics/topcom/topcom-0.17.4-r1.ebuild b/sci-mathematics/topcom/topcom-0.17.4-r1.ebuild
new file mode 100644
index 000000000000..3745a131ebb2
--- /dev/null
+++ b/sci-mathematics/topcom/topcom-0.17.4-r1.ebuild
@@ -0,0 +1,60 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=4
+
+AUTOTOOLS_AUTORECONF=yes
+
+inherit autotools-utils flag-o-matic
+
+DESCRIPTION="Computing Triangulations Of Point Configurations and Oriented Matroids"
+HOMEPAGE="http://www.rambau.wm.uni-bayreuth.de/TOPCOM/"
+SRC_URI="
+	http://www.uni-bayreuth.de/departments/wirtschaftsmathematik/rambau/Software/TOPCOM-${PV}.tar.gz
+	doc? ( http://www.rambau.wm.uni-bayreuth.de/TOPCOM/TOPCOM-manual.html )"
+
+KEYWORDS="~amd64 ~x86"
+SLOT="0"
+LICENSE="GPL-2"
+IUSE="doc examples static-libs"
+
+DEPEND="
+	>=dev-libs/gmp-5.0.5
+	>=sci-libs/cddlib-094f"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/TOPCOM-${PV}
+
+PATCHES=(
+	"${FILESDIR}"/${P}-no-internal-libs.patch
+	"${FILESDIR}"/${P}-buildsystem.patch
+	)
+
+src_prepare () {
+	# ... and link in tree versions:
+	append-libs -lgmp -lgmpxx -lcddgmp
+
+	find external -delete || die
+
+	mv configure.{in,ac} || die
+
+	autotools-utils_src_prepare
+}
+
+src_install () {
+	autotools-utils_src_install
+
+	use static-libs || rm -f "${ED}"/usr/$(get_libdir)/*a
+
+	use doc && dohtml "${DISTDIR}"/TOPCOM-manual.html
+
+	use examples && dodoc -r "${S}"/examples
+
+	mv "${ED}"/usr/bin/cube "${ED}"/usr/bin/topcom_cube || die
+}
+
+pkg_postinst() {
+	elog "Due to a file collision with media-libs/lib3ds the helper"
+	elog "'cube' has been installed as topcom_cube (see bug #547030)."
+}