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author | Patrick Taylor <patrick.joseph.taylor@gmail.com> | 2022-09-08 20:41:15 +0100 |
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committer | Patrick Taylor <patrick.joseph.taylor@gmail.com> | 2022-09-08 20:41:54 +0100 |
commit | 7911079d4e3a5d8f1c18ac258508766ad148a2a7 (patch) | |
tree | 2a7d7a9ed7ce2ab77b643ee6b8e159e165170b5c /sci-chemistry | |
parent | net-p2p/feather: fixed live ebuild (diff) | |
download | guru-7911079d4e3a5d8f1c18ac258508766ad148a2a7.tar.gz guru-7911079d4e3a5d8f1c18ac258508766ad148a2a7.tar.bz2 guru-7911079d4e3a5d8f1c18ac258508766ad148a2a7.zip |
sci-chemistry/xcrysden: new package, add 1.6.2
Signed-off-by: Patrick Taylor <patrick.joseph.taylor@gmail.com>
Diffstat (limited to 'sci-chemistry')
-rw-r--r-- | sci-chemistry/xcrysden/Manifest | 1 | ||||
-rw-r--r-- | sci-chemistry/xcrysden/files/icons/xcrysden.png | bin | 0 -> 11920 bytes | |||
-rw-r--r-- | sci-chemistry/xcrysden/files/xcrysden-1.6.2-Togl_lib.patch | 14 | ||||
-rw-r--r-- | sci-chemistry/xcrysden/files/xcrysden-1.6.2-ext-bwidget.patch | 14 | ||||
-rw-r--r-- | sci-chemistry/xcrysden/files/xcrysden-1.6.2-gcc_flags.patch | 14 | ||||
-rw-r--r-- | sci-chemistry/xcrysden/files/xcrysden-1.6.2-wrapper_paths.patch | 16 | ||||
-rw-r--r-- | sci-chemistry/xcrysden/files/xcrysden.desktop | 8 | ||||
-rw-r--r-- | sci-chemistry/xcrysden/xcrysden-1.6.2.ebuild | 67 |
8 files changed, 134 insertions, 0 deletions
diff --git a/sci-chemistry/xcrysden/Manifest b/sci-chemistry/xcrysden/Manifest new file mode 100644 index 000000000..a5d3d6532 --- /dev/null +++ b/sci-chemistry/xcrysden/Manifest @@ -0,0 +1 @@ +DIST xcrysden-1.6.2.tar.gz 2460277 BLAKE2B f0b7c2c5aeff51db97b29c8052273ed44bb9c183e0df62c406eee327c4c5d86d141d8adfd05df70b97661a8cbddbf052c233c288f1f30b308e4c877539c06a84 SHA512 9ed1b7fc11674509a3f2bf6604aa11e087fd77a971afb93039ca542cb9abb62b2553c7f386b845f004df5d3d340bdf1fe673552319788f006fd031efb6a4ad67 diff --git a/sci-chemistry/xcrysden/files/icons/xcrysden.png b/sci-chemistry/xcrysden/files/icons/xcrysden.png Binary files differnew file mode 100644 index 000000000..f41eddceb --- /dev/null +++ b/sci-chemistry/xcrysden/files/icons/xcrysden.png diff --git a/sci-chemistry/xcrysden/files/xcrysden-1.6.2-Togl_lib.patch b/sci-chemistry/xcrysden/files/xcrysden-1.6.2-Togl_lib.patch new file mode 100644 index 000000000..533c50650 --- /dev/null +++ b/sci-chemistry/xcrysden/files/xcrysden-1.6.2-Togl_lib.patch @@ -0,0 +1,14 @@ +Ensures that Togl is linked properly. +diff --git a/system/Make.sys-shared b/system/Make.sys-shared +index 51891e7..ba478fa 100644 +--- a/system/Make.sys-shared ++++ b/system/Make.sys-shared +@@ -48,7 +48,7 @@ X_INCDIR = + + TCL_LIB = -ltcl$(TCL_VER2) + TK_LIB = -ltk$(TCL_VER2) +-TOGL_LIB = -lTogl ++TOGL_LIB = -Wl,-rpath,"/usr/lib64/Togl2.0" -L/usr/lib64/Togl2.0 -lTogl2.0 + GLU_LIB = -lGLU + GL_LIB = -lGL + FFTW3_LIB = -lfftw3 diff --git a/sci-chemistry/xcrysden/files/xcrysden-1.6.2-ext-bwidget.patch b/sci-chemistry/xcrysden/files/xcrysden-1.6.2-ext-bwidget.patch new file mode 100644 index 000000000..0ca1f69b6 --- /dev/null +++ b/sci-chemistry/xcrysden/files/xcrysden-1.6.2-ext-bwidget.patch @@ -0,0 +1,14 @@ +Prevents bwidget from being automatically downloaded when it is already required as a build/run-time dependency. +diff --git a/Makefile b/Makefile +index cfdc14a..d0f7e6c 100644 +--- a/Makefile ++++ b/Makefile +@@ -18,7 +18,7 @@ what: + + all: tcl tk mesa togl fftw xcrysden + # meschach +-xcrysden: usage bwidget bindir src-C src-F src-Tcl ++xcrysden: usage bindir src-C src-F src-Tcl + + usage: $(TOPDIR)/docs/xcrysden.1 + man $(TOPDIR)/docs/xcrysden.1 | awk 'BEGIN {lprint=0; print "## do not edit changes will be lost (file automatically generated)\n"; } /SYNOPSIS/ { lprint=1; } /SEE ALSO/ { lprint=0; } /a*/ { if (lprint) print; }' > usage diff --git a/sci-chemistry/xcrysden/files/xcrysden-1.6.2-gcc_flags.patch b/sci-chemistry/xcrysden/files/xcrysden-1.6.2-gcc_flags.patch new file mode 100644 index 000000000..ef231827e --- /dev/null +++ b/sci-chemistry/xcrysden/files/xcrysden-1.6.2-gcc_flags.patch @@ -0,0 +1,14 @@ +Adds -fcommon to CFLAGS to allow compilation on more recent GCC. +diff --git a/system/Make.sys-shared b/system/Make.sys-shared +index 51891e7..f89f876 100644 +--- a/system/Make.sys-shared ++++ b/system/Make.sys-shared +@@ -19,7 +19,7 @@ MAKE = make + # C-preprocessor flags + CPPFLAGS ?= + # C-compiler flags +-CFLAGS += -ffast-math -funroll-loops -fPIC -pedantic -Wall ++CFLAGS += -ffast-math -funroll-loops -fPIC -pedantic -Wall -fcommon + + CC = gcc + #LDLIB = -ldl diff --git a/sci-chemistry/xcrysden/files/xcrysden-1.6.2-wrapper_paths.patch b/sci-chemistry/xcrysden/files/xcrysden-1.6.2-wrapper_paths.patch new file mode 100644 index 000000000..8cc8b247a --- /dev/null +++ b/sci-chemistry/xcrysden/files/xcrysden-1.6.2-wrapper_paths.patch @@ -0,0 +1,16 @@ +Ensures that wrapper scripts account for live filesystem merge. +diff --git a/sys_utils/wrappers.sh b/sys_utils/wrappers.sh +index 1fa3cc6..e078b22 100755 +--- a/sys_utils/wrappers.sh ++++ b/sys_utils/wrappers.sh +@@ -5,8 +5,8 @@ do + #!/bin/sh -f + + # simple wrapper to run $cmd +-XCRYSDEN_TOPDIR="$prefix/share/$xcrysden" +-XCRYSDEN_LIB_BINDIR="$prefix/lib/$xcrysden" ++XCRYSDEN_TOPDIR="/usr/share/$xcrysden" ++XCRYSDEN_LIB_BINDIR="/usr/lib/$xcrysden" + export XCRYSDEN_TOPDIR + export XCRYSDEN_LIB_BINDIR + diff --git a/sci-chemistry/xcrysden/files/xcrysden.desktop b/sci-chemistry/xcrysden/files/xcrysden.desktop new file mode 100644 index 000000000..1f0128280 --- /dev/null +++ b/sci-chemistry/xcrysden/files/xcrysden.desktop @@ -0,0 +1,8 @@ +[Desktop Entry] +Name=XCrySDen +Type=Application +Comment=For the visualisation of molecular and crystal structures. +Exec=xcrysden +TryExec=xcrysden +Icon=/usr/share/icons/hicolor/96x96/apps/xcrysden.png +Categories=Science; diff --git a/sci-chemistry/xcrysden/xcrysden-1.6.2.ebuild b/sci-chemistry/xcrysden/xcrysden-1.6.2.ebuild new file mode 100644 index 000000000..4d9e97a87 --- /dev/null +++ b/sci-chemistry/xcrysden/xcrysden-1.6.2.ebuild @@ -0,0 +1,67 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit desktop +inherit xdg-utils + +DESCRIPTION="For the visualisation of molecular and crystal structures." + +HOMEPAGE="http://www.xcrysden.org/" + +SRC_URI="http://www.xcrysden.org/download/${P}.tar.gz" + +LICENSE="GPL-2+" + +SLOT="0" + +KEYWORDS="~amd64" + +RDEPEND=">=dev-lang/tcl-8.6.12 + >=dev-lang/tk-8.6.12 + >=dev-tcltk/togl-2.0-r3 + >=dev-tcltk/bwidget-1.9.14 + >=media-libs/mesa-22.1.3 + >=sci-libs/fftw-3.3.10" + +BDEPEND="${RDEPEND}" + +PATCHES=( + "${FILESDIR}/${P}-ext-bwidget.patch" + "${FILESDIR}/${P}-gcc_flags.patch" + "${FILESDIR}/${P}-Togl_lib.patch" + "${FILESDIR}/${P}-wrapper_paths.patch" +) + +src_prepare() { + default + cp "${S}/system/Make.sys-shared" "${S}/Make.sys" || die 'Copying Make.sys to build dir failed.' +} + +src_compile() { + emake xcrysden +} + +src_install() { + emake \ + prefix="${D}"/usr \ + install + + domenu "${FILESDIR}/${PN}.desktop" + doicon -s 32x32 "${FILESDIR}/icons/${PN}.png" + docompress -x /usr/share/doc/${P}/examples/GAUSSIAN_files/ \ + /usr/share/doc/${P}/examples/Orca_files/ \ + /usr/share/doc/${P}/examples/XSF_Files/ \ + /usr/share/doc/${P}/examples/Scripting/ \ + /usr/share/doc/${P}/examples/FermiSurface \ + /usr/share/man/ +} + +pkg_postinst() { + xdg_icon_cache_update +} + +pkg_postrm() { + xdg_icon_cache_update +} |