blob: b418fbd5e24ded381e0c71285a8ff0900d20f7b8 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
|
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/R-3.0.2.ebuild,v 1.1 2013/09/26 13:55:24 jlec Exp $
EAPI=5
inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
BCP=${PN}-20130129.bash_completion
DESCRIPTION="Language and environment for statistical computing and graphics"
HOMEPAGE="http://www.r-project.org/"
SRC_URI="
mirror://cran/src/base/R-3/${P}.tar.gz
bash-completion? ( http://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2 )"
LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
SLOT="0"
KEYWORDS="~alpha ~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-fbsd ~x86-linux ~x64-macos"
IUSE="bash-completion cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X"
REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
CDEPEND="
app-arch/bzip2
app-text/ghostscript-gpl
dev-libs/libpcre
app-misc/realpath
virtual/blas
cairo? ( x11-libs/cairo[X] x11-libs/pango )
icu? ( dev-libs/icu )
jpeg? ( virtual/jpeg:0 )
lapack? ( virtual/lapack )
perl? ( dev-lang/perl )
png? ( media-libs/libpng )
readline? ( sys-libs/readline )
tk? ( dev-lang/tk )
X? ( x11-libs/libXmu x11-misc/xdg-utils )"
DEPEND="${CDEPEND}
virtual/pkgconfig
doc? (
virtual/latex-base
dev-texlive/texlive-fontsrecommended
)"
RDEPEND="${CDEPEND}
( || ( <sys-libs/zlib-1.2.5.1-r1 >=sys-libs/zlib-1.2.5.1-r2[minizip] ) )
app-arch/xz-utils
java? ( >=virtual/jre-1.5 )"
RESTRICT="minimal? ( test )"
R_DIR="${EROOT%/}/usr/$(get_libdir)/${PN}"
pkg_setup() {
if use openmp; then
FORTRAN_NEED_OPENMP=1
tc-has-openmp || die "Please enable openmp support in your compiler"
fi
fortran-2_pkg_setup
filter-ldflags -Wl,-Bdirect -Bdirect
# avoid using existing R installation
unset R_HOME
# Temporary fix for bug #419761
if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
append-flags -fno-ipa-cp-clone
fi
}
src_prepare() {
# gentoo bug #322965 (not applied upstream)
# https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14505
epatch "${FILESDIR}"/${PN}-2.11.1-parallel.patch
# respect ldflags (not applied upstream)
# https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14506
epatch "${FILESDIR}"/${PN}-2.12.1-ldflags.patch
# gentoo bug #383431
# https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14951
epatch "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch
# https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14953
epatch "${FILESDIR}"/${PN}-3.0.0-rmath-shared.patch
# fix packages.html for doc (gentoo bug #205103)
sed -i \
-e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
src/library/tools/R/Rd.R || die
# fix Rscript path when installed (gentoo bug #221061)
sed -i \
-e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
src/unix/Makefile.in || die "sed unix Makefile failed"
# fix HTML links to manual (gentoo bug #273957)
sed -i \
-e 's:\.\./manual/:manual/:g' \
$(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
use lapack && \
export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
if use X; then
export R_BROWSER="$(type -p xdg-open)"
export R_PDFVIEWER="$(type -p xdg-open)"
fi
use perl && \
export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
# don't search /usr/local
sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
# Fix for Darwin (OS X)
if use prefix; then
if [[ ${CHOST} == *-darwin* ]] ; then
sed -i \
-e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
-e "/SHLIB_EXT/s/\.so/.dylib/" \
configure.ac || die
# sort of "undo" 2.14.1-rmath-shared.patch
sed -i \
-e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \
src/nmath/standalone/Makefile.in || die
else
append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib"
fi
fi
AT_M4DIR=m4 eaclocal
eautoconf
}
src_configure() {
econf \
--enable-byte-compiled-packages \
--enable-R-shlib \
--disable-R-framework \
--with-system-zlib \
--with-system-bzlib \
--with-system-pcre \
--with-system-xz \
--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
--docdir="${EPREFIX}/usr/share/doc/${PF}" \
rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
$(use_enable nls) \
$(use_enable openmp) \
$(use_enable profile R-profiling) \
$(use_enable profile memory-profiling) \
$(use_enable static-libs static) \
$(use_enable static-libs R-static-lib) \
$(use_with cairo) \
$(use_with icu ICU) \
$(use_with jpeg jpeglib) \
$(use_with lapack) \
$(use_with !minimal recommended-packages) \
$(use_with png libpng) \
$(use_with readline) \
$(use_with tiff libtiff) \
$(use_with tk tcltk) \
$(use_with X x)
}
src_compile() {
export VARTEXFONTS="${T}/fonts"
emake AR="$(tc-getAR)"
emake -C src/nmath/standalone shared $(use static-libs && echo static) AR="$(tc-getAR)"
use doc && emake info pdf
}
src_install() {
default
emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
if use doc; then
emake DESTDIR="${D}" install-info install-pdf
dosym ../manual /usr/share/doc/${PF}/html/manual
fi
cat > 99R <<-EOF
LDPATH=${R_DIR}/lib
R_HOME=${R_DIR}
EOF
doenvd 99R
use bash-completion && newbashcomp "${WORKDIR}"/${BCP} ${PN}
# The buildsystem has a different understanding of install_names than what
# we require. Since it builds modules like shared objects (wrong), many
# objects (all modules) get an incorrect install_name. Fixing the build
# system here is not really trivial.
if [[ ${CHOST} == *-darwin* ]] ; then
local mod
pushd "${ED}"/usr/lib/R > /dev/null
for mod in $(find . -name "*.dylib") ; do
mod=${mod#./}
install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
"${mod}"
done
popd > /dev/null
fi
}
pkg_postinst() {
if use java; then
einfo "Re-initializing java paths for ${P}"
R CMD javareconf
fi
}
|
GitWeb