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* sci-biology/mammoth: Remove virtual/fortran and always call fortran-2_pkg_set...Justin Lecher2012-10-194-20/+21
* sci-biology/shrimp: Vesion BumpJustin Lecher2012-10-183-5/+76
* sci-biology/shrimp: Do not install elf in usr/share, #438652Justin Lecher2012-10-185-79/+49
* sci-biology/seaview: Drop oldJustin Lecher2012-10-183-83/+9
* sci-biology/glimmerhmm: Drop oldJustin Lecher2012-10-183-54/+9
* x86 stable wrt bug #430524Paweł Hajdan2012-10-173-5/+19
* x86 stable wrt bug #432366Paweł Hajdan2012-10-173-5/+18
* sci-biology/trf: Drop old; move to EAPI=4; use QA_PREBUILT, #436718Justin Lecher2012-10-064-53/+29
* Version bump, remove oldAndrey Kislyuk2012-10-055-84/+22
* Version bump, remove old, add git depAndrey Kislyuk2012-09-304-58/+19
* QA_DT_HASH (old/deprecated) -> QA_FLAGS_IGNORED (new hotness).Mike Frysinger2012-09-244-18/+32
* Stable for amd64, wrt bug #430524Agostino Sarubbo2012-09-142-5/+8
* Stable for amd64, wrt bug #432366Agostino Sarubbo2012-09-144-32/+14
* sci-biology/seaview: Add missing deps, #432366Justin Lecher2012-09-145-11/+21
* sci-biology/allpaths: Respect CXXFLAGSJustin Lecher2012-08-303-7/+18
* sci-biology/allpaths: Fix for gcc-4.7Justin Lecher2012-08-304-26/+158
* sci-biology/meme: Version Bump; respect CFLAGS, #430774Justin Lecher2012-08-264-18/+241
* sci-biology/seaview: Version Bump; Drop overlinking, #431074Justin Lecher2012-08-265-43/+72
* sci-biology/recon: Respect CFLAGS and CC, #432660Justin Lecher2012-08-264-12/+84
* sci-biology/arb: Version BUmp; add fix for gcc-4.7, #431228Justin Lecher2012-08-145-22/+129
* sci-biology/mothur: Version BUmp; fix for buffer overflows, #431258Justin Lecher2012-08-148-13/+340
* sci-biology/uchime: New additionJustin Lecher2012-08-146-12/+95
* sci-biology/rnaview: Respect CFLAGS, #429536; Bump to EAPI=4Justin Lecher2012-08-034-43/+112
* sci-biology/tree-puzzle: Mask stupid test, which fails due to precision reach...Justin Lecher2012-08-014-11/+39
* sci-biology/finchtv: Use QA_PREBUILT for binary packagesJustin Lecher2012-07-244-20/+26
* Remove packagePacho Ramos2012-07-214-118/+0
* sci-biology/primer3: Version BUmpJustin Lecher2012-07-194-19/+84
* sci-biology/tophat: Version BUmp; do parallel builds; handle debug buildJustin Lecher2012-07-196-26/+190
* sci-biology/vcftools: Version BUmp, fix build systemJustin Lecher2012-07-194-10/+117
* sci-biology/goby-cpp: Version Bump, handle static-libsJustin Lecher2012-07-193-12/+52
* Fix broken Manifest entry for infernal-1.0.2-perl-5.16.patch.Zac Medico2012-07-161-5/+4
* sci-biology/infernal: Cleaned oldJustin Lecher2012-07-153-36/+8
* sci-biology/infernal: Fix cvs updates of commiter names in patches, #426588Justin Lecher2012-07-153-21/+29
* sci-biology/psipred: Cleaned SRC_URIJustin Lecher2012-07-113-9/+22
* add missing test to IUSEMichael Sterrett2012-07-114-19/+12
* sci-biology/psipred: Version BumpJustin Lecher2012-07-105-29/+96
* sci-biology/vienna-rna: Cleaned oldJustin Lecher2012-07-105-167/+21
* Marking vienna-rna-1.8.5 ppc for bug 393867Brent Baude2012-07-103-17/+20
* sci-biology/allpathslg: Version bump, fix compilation errors with gcc-4.7, #4...Justin Lecher2012-07-093-12/+54
* sci-biology/mira: Drop oldJustin Lecher2012-07-084-113/+22
* sci-biology/amos: Add fix for gcc-4.7, #425264; cleaned oldJustin Lecher2012-07-088-234/+43
* sci-biology/seaview: Version Bump imported from sci overlay, prepared by Mart...Justin Lecher2012-07-043-12/+92
* sci-biology/plink: Moved to EAPI=4, add fix for building with gcc-4.7, #424709Justin Lecher2012-07-044-16/+97
* sci-biology/hmmer: Fix the patch, thanks xarthisius and bonsaikitten for helpJustin Lecher2012-06-283-136/+8
* next patchJustin Lecher2012-06-281-0/+132
* next tryJustin Lecher2012-06-282-11/+11
* Plain patchJustin Lecher2012-06-281-5/+5
* Fix patchJustin Lecher2012-06-283-15/+11
* fix patch againJustin Lecher2012-06-283-11/+15
* sci-biology/hmmer: Fix patch, screwed VCS tags, #423983Justin Lecher2012-06-283-13/+20