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-rw-r--r--sci-chemistry/ccpn/ChangeLog9
-rw-r--r--sci-chemistry/ccpn/Manifest12
-rw-r--r--sci-chemistry/ccpn/ccpn-2.1.5_p110905.ebuild213
-rw-r--r--sci-chemistry/ccpn/ccpn-2.2.1_p110905.ebuild213
4 files changed, 442 insertions, 5 deletions
diff --git a/sci-chemistry/ccpn/ChangeLog b/sci-chemistry/ccpn/ChangeLog
index 6bd1f73ef6e2..311643ae1b8f 100644
--- a/sci-chemistry/ccpn/ChangeLog
+++ b/sci-chemistry/ccpn/ChangeLog
@@ -1,6 +1,13 @@
# ChangeLog for sci-chemistry/ccpn
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.66 2011/08/17 10:23:13 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ChangeLog,v 1.67 2011/09/05 08:55:32 jlec Exp $
+
+*ccpn-2.2.1_p110905 (05 Sep 2011)
+*ccpn-2.1.5_p110905 (05 Sep 2011)
+
+ 05 Sep 2011; Justin Lecher <jlec@gentoo.org> +ccpn-2.1.5_p110905.ebuild,
+ +ccpn-2.2.1_p110905.ebuild:
+ Todays Python Patches
*ccpn-2.2.1_p110817 (17 Aug 2011)
*ccpn-2.1.5_p110817 (17 Aug 2011)
diff --git a/sci-chemistry/ccpn/Manifest b/sci-chemistry/ccpn/Manifest
index 1b98878cf298..b1f9eb4fe30e 100644
--- a/sci-chemistry/ccpn/Manifest
+++ b/sci-chemistry/ccpn/Manifest
@@ -22,22 +22,26 @@ DIST ccpn-update-100806.patch.bz2 187965 RMD160 3297162fe3314aa405ee58737ce45cda
DIST ccpn-update-2.1.5-110602.patch.bz2 81505 RMD160 2af0d5ca21828ccc3345ec763edfce81f2e12d11 SHA1 cf4a8613ecbb11421a4fb007500a6090b017fb2f SHA256 c8880d295914ac95c2ae2f0ffe3eb57e0e2b1b6c3c573eb31c8a40852c5cb886
DIST ccpn-update-2.1.5-110629.patch.bz2 86224 RMD160 d4cb190ce84f62639d77f6592475746e8b9f6a0e SHA1 e20f3313853dff4a3de723a2efc70efe81c63861 SHA256 df847050c95ea925db16a5c6630861e308d39286cc7c207efc4360fce53e29b2
DIST ccpn-update-2.1.5-110817.patch.bz2 88191 RMD160 9fe24e51a1416cdde25ac6d25c2764840c1a00ef SHA1 d16956e6ad7530d17c9e46b877eaf993959f49a2 SHA256 176fd4488c40d7eb426df353d85a05ddb8e4b4126f32264c9d536bf1799fe44c
+DIST ccpn-update-2.1.5-110905.patch.bz2 99670 RMD160 d3163c0d2d07661e318fa101267ef9dba6d05244 SHA1 3b61f72e66bf56c8c2799b864eef91643a30f367 SHA256 c2fa8f6c3f9826747e9f244a46b7ab701ff83dabc36f8ae534db0d76239c5da9
DIST ccpn-update-2.2.1-110602.patch.bz2 57084 RMD160 502c9ca948caf7be5e87759222982a952dd81bc2 SHA1 31725499eba0bb851357227fc4db274121a32240 SHA256 591be1c0c5dfea56c7fa8aec5da154a2a7263a11e8e20ff2a71a2e6e484c6e00
DIST ccpn-update-2.2.1-110629.patch.bz2 66050 RMD160 8d3b37d9c848f177b4c35f36eccd1026500af0b4 SHA1 66371f52b15ec8c689c1634fa30f6679c4e8c681 SHA256 99280022b594a45d1bdb9811f0f78851a8cb8282476c521987def7ab13cb0dac
DIST ccpn-update-2.2.1-110817.patch.bz2 77149 RMD160 69c2417ca700129d9c53f90d5be665b2192ae0c0 SHA1 b61874c4753251ac08fd4549f6b656352e462ece SHA256 f08b1082435546c605d516167617cdf5b163aa820150718fa8e205cd4f9a3232
+DIST ccpn-update-2.2.1-110905.patch.bz2 78329 RMD160 295a3057f4ccd0ad89a3bc75a9992351953be891 SHA1 b7f1e545777d5850564475ce5fb495c0f516a748 SHA256 e3823d29f58a2f6adb3a1855c6665604d8cff8a7f26af75f2b8c6c990a58a36f
EBUILD ccpn-2.1.3.1_p100806.ebuild 5188 RMD160 b66825e37b79a5f6ec6635b9f3236d1cda2da672 SHA1 458f516ffad25d9283b21c9dfb8e50c6323f4264 SHA256 ff57abefefd3bb128a3f96bf039cbaa5ed97350f6b41fdbdd4b4365ff9e68e51
EBUILD ccpn-2.1.5_p110602.ebuild 5794 RMD160 8a28dce36877c1bf37a188364d831322f6a88049 SHA1 a5bbc2015b8b7f7f8a11e9a6297be2f80edcf585 SHA256 6c28d2dfd433267d1dcd5ba25de0ae6a8dcfd312df2943cca70e2eb896b2343b
EBUILD ccpn-2.1.5_p110629.ebuild 5794 RMD160 a4bc4bfc58ac834cb2551366e8eaf59eb9079f6f SHA1 679454b9f8f7317ebb4b75d9729efe2ccd8fcd1e SHA256 4eb9b69f024bf309d9f88468528aeecffa03f14e96d59a5fca3ce8733e7f6bf0
EBUILD ccpn-2.1.5_p110817.ebuild 5794 RMD160 d18b5e31dcb31eeaff5dc88a26ce2e5db7147906 SHA1 f2485d1ba0d0a7110b1947019770e045e43f8e2c SHA256 8c8a13a96ea4b5707879a422245117491ca4b87f46b3aa2a63e74379ffcc5de1
+EBUILD ccpn-2.1.5_p110905.ebuild 5794 RMD160 5b40785ae8c0471b54e19fa04f0ed008a50f1aa5 SHA1 a728c6529fb566c5537dd6e8c4c0fc75d5725bef SHA256 e009253f4bc3c8b50af8a036a457ec81cb70e06cdd2156e8d8a336acc8e8b16a
EBUILD ccpn-2.2.1_p110602.ebuild 5806 RMD160 ad1b5507ba8c6534023cf02498a1689ebad49b71 SHA1 18935d2bb4af71fd0063927084d5bb1a454672dc SHA256 e5d6eae560e472bfa730454d37dad7d7979ded74a2fa7bbcec963332d68d7c0d
EBUILD ccpn-2.2.1_p110629.ebuild 5806 RMD160 a63bf6ce2b38cfb5a39a1b98a0666d492fd90c87 SHA1 695710527df0138d62a448870e0a3809aab1ccae SHA256 fad2ae44188fa8fd22f1d0096c9d2164ea947e57f170683e08781fb7f1364f60
EBUILD ccpn-2.2.1_p110817.ebuild 5806 RMD160 397603fb9fea25aea0c5a9d92029a535e2ae7aa2 SHA1 376860302c8aab8fc0a3bcd33931eff158c4459a SHA256 ae98ca1bd9383d1d16051f66e9056bb37884261514e6aec469dfb2a9ebaeb318
-MISC ChangeLog 12160 RMD160 da848c629c448c29ae71f06e1700202fb694707d SHA1 cf7cda54031e19e5e86ab1ab75a2e865c2d267db SHA256 cf4eba4c6954f9e5652a1bc0c696324e48e870fee61073cbee8e0a7f9c22deec
+EBUILD ccpn-2.2.1_p110905.ebuild 5806 RMD160 12307b04226e935f4b81649515a0cfbfc6d1b26c SHA1 fe299ba1ab0dbe330dbe3170e74d0488943291ae SHA256 e770d80a032174cdd5e533afd5d70caa8e8913e44544eb151c02334ef770480f
+MISC ChangeLog 12359 RMD160 004b2b8a2a967e2ffe9dacef917363a6c25385f8 SHA1 2821106f79a555127d0d1d09a16f4f3281a016ac SHA256 f4a0835b7fef3737634e614d8aa08d2d66062e9da212d41e34379974819d9588
MISC metadata.xml 322 RMD160 9fd5fba7405b689fc39a089d81ffdaa9f961b514 SHA1 0c31132b25fca04cff97ef11fdc11940f90c77d0 SHA256 7468ba4c27b879e7ed5f82274f5837e51f1f389673a33b9e26e1756a6b0783df
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v2.0.18 (GNU/Linux)
-iEYEAREKAAYFAk5LlpcACgkQgAnW8HDreRbAFwCgm9GVMJlakXkMsUf5uHKGDQlu
-McUAnA4CHDSFoXZHSSirTwncMiZ5ddrx
-=aVYs
+iEYEAREKAAYFAk5kjooACgkQgAnW8HDreRa4fQCgm4UbmuQFUokV8ddXQUE3ESmr
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diff --git a/sci-chemistry/ccpn/ccpn-2.1.5_p110905.ebuild b/sci-chemistry/ccpn/ccpn-2.1.5_p110905.ebuild
new file mode 100644
index 000000000000..6051399c1b3a
--- /dev/null
+++ b/sci-chemistry/ccpn/ccpn-2.1.5_p110905.ebuild
@@ -0,0 +1,213 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.1.5_p110905.ebuild,v 1.1 2011/09/05 08:55:32 jlec Exp $
+
+EAPI="3"
+
+PYTHON_DEPEND="2:2.5"
+PYTHON_USE_WITH="ssl tk"
+
+inherit eutils portability python toolchain-funcs versionator
+
+PATCHSET="${PV##*_p}"
+MY_PN="${PN}mr"
+MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
+MY_MAJOR="$(get_version_component_range 1-3)"
+
+DESCRIPTION="The Collaborative Computing Project for NMR"
+HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
+SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
+ [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.bz2"
+
+SLOT="0"
+LICENSE="|| ( CCPN LGPL-2.1 )"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="extendnmr +opengl"
+
+RDEPEND="
+ dev-lang/tk[threads]
+ >=dev-python/numpy-1.4
+ >=dev-tcltk/tix-8.4.3
+ =sci-libs/ccpn-data-"${MY_MAJOR}"*
+ x11-libs/libXext
+ x11-libs/libX11
+ opengl? (
+ media-libs/freeglut
+ dev-python/pyglet )"
+# We need to fix this
+# sci-chemistry/mdd
+DEPEND="${RDEPEND}"
+PDEPEND="
+ extendnmr? (
+ sci-chemistry/aria
+ sci-chemistry/prodecomp )"
+
+RESTRICT="mirror"
+
+S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
+
+pkg_setup() {
+ python_set_active_version 2
+}
+
+src_prepare() {
+ [[ -n ${PATCHSET} ]] && \
+ epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
+
+ epatch "${FILESDIR}"/${MY_PV}-parallel.patch
+
+ local tk_ver
+ local myconf
+
+ tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
+
+ if use opengl; then
+ GLUT_NEED_INIT="-DNEED_GLUT_INIT"
+ IGNORE_GL_FLAG=""
+ GL_FLAG="-DUSE_GL_TRUE"
+ GL_DIR="${EPREFIX}/usr"
+ GL_LIB="-lglut -lGLU -lGL"
+ GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
+ GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
+
+ else
+ IGNORE_GL_FLAG="-DIGNORE_GL"
+ GL_FLAG="-DUSE_GL_FALSE"
+ fi
+
+ GLUT_NOT_IN_GL=""
+ GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
+
+ rm -rf data model doc license || die
+
+ sed \
+ -e "s|/usr|${EPREFIX}/usr|g" \
+ -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
+ -e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
+ -e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
+ -e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
+ -e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
+ -e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
+ -e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
+ -e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
+ -e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
+ -e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
+ -e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
+ -e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I${EPREFIX}/$(python_get_includedir)|g" \
+ -e "s|^\(PYTHON_LIB =\).*|\1 $(python_get_library -l)|g" \
+ c/environment_default.txt > c/environment.txt
+}
+
+src_compile() {
+ emake -C c all links || die
+}
+
+src_install() {
+ local libdir
+ local tkver
+ local _wrapper
+
+ find . -name "*.pyc" -type d -delete
+
+ libdir=$(get_libdir)
+ tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
+
+ _wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara"
+ use extendnmr && _wrapper="${_wrapper} extendNmr"
+ for wrapper in ${_wrapper}; do
+ sed \
+ -e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \
+ -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
+ -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
+ -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
+ -e "s|gentoopython|${EPREFIX}/usr/bin/python|g" \
+ -e "s|//|/|g" \
+ "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
+ dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
+ done
+
+ local in_path
+ local files
+ local pydocs
+
+ pydocs="$(find python -name doc -type d)"
+ rm -rf ${pydocs} || die
+
+ in_path=$(python_get_sitedir)/${PN}
+
+ for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
+ sed \
+ -e 's|#from __future__|from __future__|g' \
+ -i ${i} || die
+ done
+
+ insinto ${in_path}
+
+ dodir ${in_path}/c
+
+ ebegin "Installing main files"
+ doins -r python || die "main files installation failed"
+ eend
+ dosym ../../../..//share/doc/ccpn-data-${MY_MAJOR}/html ${in_path}/doc || die
+ for i in ${pydocs}; do
+ dosym /usr/share/doc/ccpn-data-${MY_MAJOR}/html/${i} ${in_path}/${i}
+ done
+
+ dosym /usr/share/ccpn/data ${in_path}/data
+ dosym /usr/share/ccpn/model ${in_path}/model
+
+ einfo "Adjusting permissions"
+
+ files="
+ cambridge/c/BayesPeakSeparator.so
+ ccp/c/StructUtil.so
+ ccp/c/StructStructure.so
+ ccp/c/StructBond.so
+ ccp/c/StructAtom.so
+ ccpnmr/c/DyAtomCoord.so
+ ccpnmr/c/DyDistConstraint.so
+ ccpnmr/c/DyDistForce.so
+ ccpnmr/c/AtomCoordList.so
+ ccpnmr/c/DyAtomCoordList.so
+ ccpnmr/c/ContourStyle.so
+ ccpnmr/c/ContourLevels.so
+ ccpnmr/c/SliceFile.so
+ ccpnmr/c/PeakCluster.so
+ ccpnmr/c/Dynamics.so
+ ccpnmr/c/Bacus.so
+ ccpnmr/c/Midge.so
+ ccpnmr/c/DyDistConstraintList.so
+ ccpnmr/c/WinPeakList.so
+ ccpnmr/c/PeakList.so
+ ccpnmr/c/DistConstraint.so
+ ccpnmr/c/CloudUtil.so
+ ccpnmr/c/DistForce.so
+ ccpnmr/c/DistConstraintList.so
+ ccpnmr/c/AtomCoord.so
+ ccpnmr/c/DyDynamics.so
+ ccpnmr/c/ContourFile.so
+ memops/c/ShapeFile.so
+ memops/c/BlockFile.so
+ memops/c/PdfHandler.so
+ memops/c/MemCache.so
+ memops/c/FitMethod.so
+ memops/c/PsHandler.so
+ memops/c/GlHandler.so
+ memops/c/StoreFile.so
+ memops/c/StoreHandler.so
+ memops/c/TkHandler.so"
+ for FILE in ${files}; do
+ fperms 755 ${in_path}/python/${FILE}
+ done
+}
+
+pkg_postinst() {
+ python_mod_optimize ${PN}
+}
+
+pkg_postrm() {
+ python_mod_cleanup ${PN}
+}
diff --git a/sci-chemistry/ccpn/ccpn-2.2.1_p110905.ebuild b/sci-chemistry/ccpn/ccpn-2.2.1_p110905.ebuild
new file mode 100644
index 000000000000..bc5429cc7a12
--- /dev/null
+++ b/sci-chemistry/ccpn/ccpn-2.2.1_p110905.ebuild
@@ -0,0 +1,213 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.1_p110905.ebuild,v 1.1 2011/09/05 08:55:32 jlec Exp $
+
+EAPI="3"
+
+PYTHON_DEPEND="2:2.5"
+PYTHON_USE_WITH="ssl tk"
+
+inherit eutils portability python toolchain-funcs versionator
+
+PATCHSET="${PV##*_p}"
+MY_PN="${PN}mr"
+MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
+MY_MAJOR="$(get_version_component_range 1-3)"
+
+DESCRIPTION="The Collaborative Computing Project for NMR"
+SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${MY_PV}.tar.gz"
+ [[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.bz2"
+HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
+
+SLOT="0"
+LICENSE="|| ( CCPN LGPL-2.1 )"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="extendnmr +opengl"
+
+RDEPEND="
+ dev-lang/tk[threads]
+ >=dev-python/numpy-1.4
+ >=dev-tcltk/tix-8.4.3
+ =sci-libs/ccpn-data-"${MY_MAJOR}"*
+ x11-libs/libXext
+ x11-libs/libX11
+ opengl? (
+ media-libs/freeglut
+ dev-python/pyglet )"
+# We need to fix this
+# sci-chemistry/mdd
+DEPEND="${RDEPEND}"
+PDEPEND="
+ extendnmr? (
+ sci-chemistry/aria
+ sci-chemistry/prodecomp )"
+
+RESTRICT="mirror"
+
+S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
+
+pkg_setup() {
+ python_set_active_version 2
+}
+
+src_prepare() {
+ [[ -n ${PATCHSET} ]] && \
+ epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
+
+ epatch "${FILESDIR}"/${MY_PV}-parallel.patch
+
+ local tk_ver
+ local myconf
+
+ tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
+
+ if use opengl; then
+ GLUT_NEED_INIT="-DNEED_GLUT_INIT"
+ IGNORE_GL_FLAG=""
+ GL_FLAG="-DUSE_GL_TRUE"
+ GL_DIR="${EPREFIX}/usr"
+ GL_LIB="-lglut -lGLU -lGL"
+ GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
+ GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
+
+ else
+ IGNORE_GL_FLAG="-DIGNORE_GL"
+ GL_FLAG="-DUSE_GL_FALSE"
+ fi
+
+ GLUT_NOT_IN_GL=""
+ GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
+
+ rm -rf data model doc license || die
+
+ sed \
+ -e "s|/usr|${EPREFIX}/usr|g" \
+ -e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
+ -e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
+ -e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
+ -e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
+ -e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
+ -e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
+ -e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
+ -e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
+ -e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
+ -e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
+ -e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
+ -e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
+ -e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I${EPREFIX}/$(python_get_includedir)|g" \
+ -e "s|^\(PYTHON_LIB =\).*|\1 $(python_get_library -l)|g" \
+ c/environment_default.txt > c/environment.txt
+}
+
+src_compile() {
+ emake -C c all links || die
+}
+
+src_install() {
+ local libdir
+ local tkver
+ local _wrapper
+
+ find . -name "*.pyc" -type d -delete
+
+ libdir=$(get_libdir)
+ tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
+
+ _wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara"
+ use extendnmr && _wrapper="${_wrapper} extendNmr"
+ for wrapper in ${_wrapper}; do
+ sed \
+ -e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \
+ -e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
+ -e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
+ -e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
+ -e "s|gentoopython|${EPREFIX}/usr/bin/python|g" \
+ -e "s|//|/|g" \
+ "${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
+ dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
+ done
+
+ local in_path
+ local files
+ local pydocs
+
+ pydocs="$(find python -name doc -type d)"
+ rm -rf ${pydocs} || die
+
+ in_path=$(python_get_sitedir)/${PN}
+
+ for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
+ sed \
+ -e 's|#from __future__|from __future__|g' \
+ -i ${i} || die
+ done
+
+ insinto ${in_path}
+
+ dodir ${in_path}/c
+
+ ebegin "Installing main files"
+ doins -r python || die "main files installation failed"
+ eend
+ dosym ../../../..//share/doc/ccpn-data-${MY_MAJOR}/html ${in_path}/doc || die
+ for i in ${pydocs}; do
+ dosym /usr/share/doc/ccpn-data-${MY_MAJOR}/html/${i} ${in_path}/${i}
+ done
+
+ dosym /usr/share/ccpn/data ${in_path}/data
+ dosym /usr/share/ccpn/model ${in_path}/model
+
+ einfo "Adjusting permissions"
+
+ files="
+ cambridge/c/BayesPeakSeparator.so
+ ccp/c/StructUtil.so
+ ccp/c/StructStructure.so
+ ccp/c/StructBond.so
+ ccp/c/StructAtom.so
+ ccpnmr/c/DyAtomCoord.so
+ ccpnmr/c/DyDistConstraint.so
+ ccpnmr/c/DyDistForce.so
+ ccpnmr/c/AtomCoordList.so
+ ccpnmr/c/DyAtomCoordList.so
+ ccpnmr/c/ContourStyle.so
+ ccpnmr/c/ContourLevels.so
+ ccpnmr/c/SliceFile.so
+ ccpnmr/c/PeakCluster.so
+ ccpnmr/c/Dynamics.so
+ ccpnmr/c/Bacus.so
+ ccpnmr/c/Midge.so
+ ccpnmr/c/DyDistConstraintList.so
+ ccpnmr/c/WinPeakList.so
+ ccpnmr/c/PeakList.so
+ ccpnmr/c/DistConstraint.so
+ ccpnmr/c/CloudUtil.so
+ ccpnmr/c/DistForce.so
+ ccpnmr/c/DistConstraintList.so
+ ccpnmr/c/AtomCoord.so
+ ccpnmr/c/DyDynamics.so
+ ccpnmr/c/ContourFile.so
+ memops/c/ShapeFile.so
+ memops/c/BlockFile.so
+ memops/c/PdfHandler.so
+ memops/c/MemCache.so
+ memops/c/FitMethod.so
+ memops/c/PsHandler.so
+ memops/c/GlHandler.so
+ memops/c/StoreFile.so
+ memops/c/StoreHandler.so
+ memops/c/TkHandler.so"
+ for FILE in ${files}; do
+ fperms 755 ${in_path}/python/${FILE}
+ done
+}
+
+pkg_postinst() {
+ python_mod_optimize ${PN}
+}
+
+pkg_postrm() {
+ python_mod_cleanup ${PN}
+}