Version bump and move to dialign-tx, take ownership

Package-Manager: portage-2.2_rc30/cvs/Linux x86_64

4 files changed, 102 insertions, 0 deletions

diff --git a/sci-biology/dialign-tx/ChangeLog b/sci-biology/dialign-tx/ChangeLog
new file mode 100644
index 000000000000..b506262955b5
--- /dev/null
+++ b/sci-biology/dialign-tx/ChangeLog
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+# ChangeLog for sci-biology/dialign-t
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/dialign-tx/ChangeLog,v 1.1 2009/11/06 19:58:46 weaver Exp $
+
+*dialign-tx-1.0.2 (06 Nov 2009)
+
+  06 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
+  +dialign-tx-1.0.2.ebuild:
+  Version bump and move to dialign-tx, take ownership
+
+  17 Feb 2008; Christian Faulhammer <opfer@gentoo.org>
+  dialign-t-0.2.2.ebuild:
+  stable amd64, bug 207109
+
+  17 Feb 2008; Christian Faulhammer <opfer@gentoo.org>
+  dialign-t-0.2.2.ebuild:
+  quote variables
+
+  17 Feb 2008; Christian Faulhammer <opfer@gentoo.org>
+  dialign-t-0.2.2.ebuild:
+  stable x86, bug 207109
+
+*dialign-t-0.2.2 (12 Jul 2007)
+
+  12 Jul 2007; Jeff Gardner <je_fro@gentoo.org> +dialign-t-0.2.2.ebuild:
+  New version, add amd64.
+
+  22 Feb 2007; Markus Ullmann <jokey@gentoo.org> ChangeLog:
+  Redigest for Manifest2
+
+  01 Oct 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
+  Remove myself as maintainer so it goes to all of the sci-biology team.
+
+  09 Jul 2006; Donnie Berkholz <dberkholz@gentoo.org>;
+  dialign-t-0.2.1.ebuild:
+  x86 stable.
+
+  07 Jul 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
+  Update to my new email address.
+
+*dialign-t-0.2.1 (21 Feb 2006)
+
+  21 Feb 2006; Donnie Berkholz <dberkholz@gentoo.org>; +metadata.xml,
+  +dialign-t-0.2.1.ebuild:
+  New multiple sequence alignment package. Perhaps the most accurate and
+  fastest local aligner.
+
diff --git a/sci-biology/dialign-tx/Manifest b/sci-biology/dialign-tx/Manifest
new file mode 100644
index 000000000000..068ed3dc0e9c
--- /dev/null
+++ b/sci-biology/dialign-tx/Manifest
@@ -0,0 +1,4 @@
+DIST DIALIGN-TX_1.0.2.tar.gz 1765296 RMD160 0bd076c5efe50b037a08554fdb565d8d9364e599 SHA1 4d4e50070f019b88078105ec21f22b1005a010af SHA256 fb3940a48a12875332752a298f619f0da62593189cd257d28932463c7cebcb8f
+EBUILD dialign-tx-1.0.2.ebuild 991 RMD160 527fbccb949c5e49d8b7c5aabb0541678ad05f00 SHA1 044098617eef32fd1314d60a4efa5a4802e1a7ea SHA256 ac559d4443cf4ca30e9db235b24ee82f60aa9db34d3d4af161d917e487952c37
+MISC ChangeLog 1502 RMD160 b0583d24b8b5da70465bf681e8ca5412c4ff0adb SHA1 98f45d9fc70b7840cab949feaa1657cf214be824 SHA256 3c60cce65f720b9cbd79a13b3adb9497db763a02e3ca83d0645571016d99d44e
+MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/dialign-tx/dialign-tx-1.0.2.ebuild b/sci-biology/dialign-tx/dialign-tx-1.0.2.ebuild
new file mode 100644
index 000000000000..75624b31ed7e
--- /dev/null
+++ b/sci-biology/dialign-tx/dialign-tx-1.0.2.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/dialign-tx/dialign-tx-1.0.2.ebuild,v 1.1 2009/11/06 19:58:46 weaver Exp $
+
+EAPI="2"
+
+inherit multilib toolchain-funcs
+
+MY_P="DIALIGN-TX_${PV}"
+
+DESCRIPTION="Greedy and progressive approaches for segment-based multiple sequence alignment"
+HOMEPAGE="http://dialign-tx.gobics.de/"
+SRC_URI="http://dialign-tx.gobics.de/${MY_P}.tar.gz"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND=""
+
+S="${WORKDIR}/${MY_P}"
+
+src_compile() {
+	emake -C source clean
+	emake -C source \
+		CPPFLAGS="${CFLAGS}" \
+		|| die "make failed"
+}
+
+src_install() {
+	DESTTREE="/usr" dobin "${S}"/source/dialign-tx
+	insinto /usr/$(get_libdir)/${PN}/conf
+	doins "${S}"/conf/*
+}
+
+pkg_postinst() {
+	einfo "The configuration directory is"
+	einfo "${ROOT}usr/$(get_libdir)/${PN}/conf"
+	einfo "You will need to pass this to ${PN} on every run."
+}
diff --git a/sci-biology/dialign-tx/metadata.xml b/sci-biology/dialign-tx/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-biology/dialign-tx/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>