New version. Added 2.0.3b to x86. Removed old version.

Package-Manager: portage-2.0.51.22-r2

7 files changed, 69 insertions, 48 deletions

diff --git a/sci-biology/qrna/ChangeLog b/sci-biology/qrna/ChangeLog
index c4ad22e9d52f..193bd7821456 100644
--- a/sci-biology/qrna/ChangeLog
+++ b/sci-biology/qrna/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/qrna
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.4 2005/05/13 01:54:59 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/ChangeLog,v 1.5 2005/08/07 14:21:59 ribosome Exp $
+
+*qrna-2.0.3c (07 Aug 2005)
+
+  07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> -qrna-2.0.2c.ebuild,
+  qrna-2.0.3b.ebuild, +qrna-2.0.3c.ebuild:
+  New version. Added 2.0.3b to x86. Removed old version.
 
 *qrna-2.0.3b (13 May 2005)
 
diff --git a/sci-biology/qrna/Manifest b/sci-biology/qrna/Manifest
index 180c8726a593..811530832c42 100644
--- a/sci-biology/qrna/Manifest
+++ b/sci-biology/qrna/Manifest
@@ -1,7 +1,7 @@
-MD5 39b495aeaa79d837eafe1b311eae4a99 qrna-2.0.3b.ebuild 1327
-MD5 6ccfb9d7cf660b0dc339d5ef8c9f85cc qrna-2.0.2c.ebuild 897
-MD5 393bbffcac028e8358b84673f8fc2532 ChangeLog 1055
+MD5 9dbe030b7efef2234382170012f4c3e1 qrna-2.0.3b.ebuild 1326
+MD5 48ca790e12c4e44c69d30860dccf1cab qrna-2.0.3c.ebuild 1327
+MD5 53e3ce5db09aa41ce305800153431583 ChangeLog 1258
 MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
 MD5 9127b0a4628230fc3bf2e201ca7519a9 files/26qrna 30
-MD5 23a5277d2c657c4624bc93b197c51020 files/digest-qrna-2.0.2c 57
 MD5 37c729a337a1eba6eda00b69f3d5f608 files/digest-qrna-2.0.3b 65
+MD5 12392df208522b818f5f2c72a7770a0e files/digest-qrna-2.0.3c 65
diff --git a/sci-biology/qrna/files/digest-qrna-2.0.2c b/sci-biology/qrna/files/digest-qrna-2.0.2c
deleted file mode 100644
index 7c2bd227c4a0..000000000000
--- a/sci-biology/qrna/files/digest-qrna-2.0.2c
+++ /dev/null
@@ -1 +0,0 @@
-MD5 910590603c4c0f1153930d3ad4d05a85 qrna.tar.Z 14045716
diff --git a/sci-biology/qrna/files/digest-qrna-2.0.3c b/sci-biology/qrna/files/digest-qrna-2.0.3c
new file mode 100644
index 000000000000..a542b1e52238
--- /dev/null
+++ b/sci-biology/qrna/files/digest-qrna-2.0.3c
@@ -0,0 +1 @@
+MD5 b1826da543a4b00070979a617f484443 qrna-2.0.3c.tar.bz2 6423705
diff --git a/sci-biology/qrna/qrna-2.0.2c.ebuild b/sci-biology/qrna/qrna-2.0.2c.ebuild
deleted file mode 100644
index 5cb56586819f..000000000000
--- a/sci-biology/qrna/qrna-2.0.2c.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.2c.ebuild,v 1.1 2004/12/23 15:28:29 ribosome Exp $
-
-DESCRIPTION="Prototype ncRNA genefinder"
-HOMEPAGE="http://www.genetics.wustl.edu/eddy/software/"
-SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/software/qrna.tar.Z"
-LICENSE="GPL-2"
-
-SLOT="0"
-KEYWORDS="x86 ~ppc ~amd64"
-IUSE="perl"
-
-DEPEND="perl? ( dev-lang/perl )
-	virtual/libc"
-
-src_compile () {
-	cd ${S}/squid
-	emake || die
-	cd ${S}/src
-	emake || die
-}
-
-src_install () {
-	dobin src/qrna
-	use perl && dobin scripts/*
-
-	newdoc 00README README
-	insinto /usr/share/doc/${PF}
-	doins documentation/*
-
-	insinto /usr/share/${PN}/data
-	doins lib/*
-	insinto /usr/share/${PN}/demos
-	doins Demos/*
-
-	# Sets the path to the QRNA data files.
-	insinto /etc/env.d
-	doins ${FILESDIR}/26qrna
-}
diff --git a/sci-biology/qrna/qrna-2.0.3b.ebuild b/sci-biology/qrna/qrna-2.0.3b.ebuild
index ff596d6b2be7..9025faaaa37f 100644
--- a/sci-biology/qrna/qrna-2.0.3b.ebuild
+++ b/sci-biology/qrna/qrna-2.0.3b.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2005 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3b.ebuild,v 1.1 2005/05/13 01:54:59 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3b.ebuild,v 1.2 2005/08/07 14:21:59 ribosome Exp $
 
 inherit toolchain-funcs
 
@@ -10,7 +10,7 @@ SRC_URI="mirror://gentoo/${P}.tar.bz2"
 LICENSE="GPL-2"
 
 SLOT="0"
-KEYWORDS="~x86 ~ppc ~amd64"
+KEYWORDS="x86 ~ppc ~amd64"
 IUSE=""
 
 DEPEND="dev-lang/perl
diff --git a/sci-biology/qrna/qrna-2.0.3c.ebuild b/sci-biology/qrna/qrna-2.0.3c.ebuild
new file mode 100644
index 000000000000..2c32d6e7b779
--- /dev/null
+++ b/sci-biology/qrna/qrna-2.0.3c.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/qrna/qrna-2.0.3c.ebuild,v 1.1 2005/08/07 14:21:59 ribosome Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="Prototype ncRNA genefinder"
+HOMEPAGE="http://www.genetics.wustl.edu/eddy/software/"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="GPL-2"
+
+SLOT="0"
+KEYWORDS="~x86 ~ppc ~amd64"
+IUSE=""
+
+DEPEND="dev-lang/perl
+	virtual/libc"
+
+src_compile () {
+	sed -e "s/CC = gcc/CC = $(tc-getCC)/" \
+		-e "s/CFLAGS = -O/CFLAGS = ${CFLAGS}/" \
+		-i src/Makefile squid/Makefile
+	sed -e "s/CC     = gcc/CC = $(tc-getCC)/" \
+		-e "s/CFLAGS = -g -O2/CFLAGS = ${CFLAGS}/" \
+		-i squid02/Makefile
+	cd ${S}/squid
+	emake || die
+	cd ${S}/squid02
+	emake || die
+	cd ${S}/src
+	emake || die
+}
+
+src_install () {
+	cd ${S}/src
+	dobin cfgbuild eqrna eqrna_sample main rnamat_main shuffle
+	cd ${S}/squid02
+	dobin afetch alistat compalign compstruct revcomp seqsplit seqstat \
+		sfetch shuffle sindex sreformat translate weight
+	cd ${S}
+	dobin scripts/*
+
+	newdoc 00README
+	insinto /usr/share/doc/${PF}
+	doins documentation/*
+
+	insinto /usr/share/${PN}/data
+	doins lib/*
+	insinto /usr/share/${PN}/demos
+	doins Demos/*
+
+	# Sets the path to the QRNA data files.
+	insinto /etc/env.d
+	doins ${FILESDIR}/26qrna
+}