diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2012-05-29 02:44:21 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2012-05-29 02:44:21 +0000 |
| commit | 50fd175a2584775584acaf12a7ab8bd7cd2419c5 (patch) | |
| tree | 759126e4f09aca6fc7c6fe628a6bd85112596dbc /sci-biology | |
| parent | Add dev-perl/Net-DNS and dev-perl/Getopt-GUI-Long as RDEPEND (bug 418009 and ... (diff) | |
| download | historical-50fd175a2584775584acaf12a7ab8bd7cd2419c5.tar.gz historical-50fd175a2584775584acaf12a7ab8bd7cd2419c5.tar.bz2 historical-50fd175a2584775584acaf12a7ab8bd7cd2419c5.zip | |
version bump
Package-Manager: portage-2.2.0_alpha74/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/abyss/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/abyss/Manifest | 10 | ||||
| -rw-r--r-- | sci-biology/abyss/abyss-1.3.3.ebuild | 35 |
3 files changed, 48 insertions, 6 deletions
diff --git a/sci-biology/abyss/ChangeLog b/sci-biology/abyss/ChangeLog index 0f7d4e0f7817..7d16878ef343 100644 --- a/sci-biology/abyss/ChangeLog +++ b/sci-biology/abyss/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/abyss -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.11 2011/09/24 21:48:12 weaver Exp $ +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.12 2012/05/29 02:44:21 weaver Exp $ + +*abyss-1.3.3 (29 May 2012) + + 29 May 2012; Andrey Kislyuk <weaver@gentoo.org> +abyss-1.3.3.ebuild: + version bump *abyss-1.3.0 (24 Sep 2011) diff --git a/sci-biology/abyss/Manifest b/sci-biology/abyss/Manifest index 493b72385368..56809c3ef1a9 100644 --- a/sci-biology/abyss/Manifest +++ b/sci-biology/abyss/Manifest @@ -4,15 +4,17 @@ Hash: SHA1 DIST abyss-1.2.3.tar.gz 313587 RMD160 a8f9b54a8fc4ab58f372b25183e806abe5a7eea4 SHA1 cebe61a38f13ce822fb3bc719681858e31b8a6e7 SHA256 d4039cc4cd44ebdcbf3107e6d1e80380dfe3817c64a74d8ac64bc717f07e4fd5 DIST abyss-1.2.7.tar.gz 467831 RMD160 0dbf424fe8c28e0a5dc88cbcef4d1ba79b4924b3 SHA1 84708296878ef0be2c6eedcba9fbf74ade08227a SHA256 2c3bc0b6046dbbfcb9298f91314c4a2979886009a5d5d68178871e3a8b1d11c2 DIST abyss-1.3.0.tar.gz 509670 RMD160 c1c51dc1a6698452331a362a98a18975196665d1 SHA1 ca067e7b94329f3e0be764a447e77389d94f4b40 SHA256 50ea7d29f442060fa9cb9f794e5b651d99ced38049be3a489c9bbe37288e8012 +DIST abyss-1.3.3.tar.gz 621480 RMD160 74e0f1658c05b6df6bf4ae03c0cd424dd2a89202 SHA1 43985294ba42ee3ed9e8e5eb14d3b1971238a20a SHA256 60396e2c8813952ceb1c66a3ad7c87eda984aa1e4952a14265217d9f639706a0 EBUILD abyss-1.2.3.ebuild 753 RMD160 d7593fdee0b53d44c4ff4f64c21fa4c51bc804b5 SHA1 92891fc0a9bc436654c53e1f8d21a935a1c29ae3 SHA256 693c360bad8e1a93cd2fda81b3471b19af4ba3eeb7bd0b508d2257fb00e7a997 EBUILD abyss-1.2.7.ebuild 869 RMD160 444d2c991c15d4b5a976e4aed7cd660a97bedd19 SHA1 391ccdc04f83a8e6c21b257894570893a257583c SHA256 7e0052aca03cf180b839de88f367c0c8f39cb913bea27f4faa781dcb448bbf65 EBUILD abyss-1.3.0.ebuild 873 RMD160 19345465b2c21e0ab3c91e4672550394d28fec6f SHA1 24e29df27379540a5c48c30880dd225ea71a0eb5 SHA256 bdac80ab73066285b7e62c0cee6fabadfd64c59ae2b944154cd30ea916d260fc -MISC ChangeLog 1712 RMD160 beae378bbf848a9d998054e47286210b091957d1 SHA1 7ccf92cd524ab3beb6b5c1112347e707bf344048 SHA256 d2a5f27ced80f0aca4ad9d8361e00c3cac48decb352d2de8da5325384addfac3 +EBUILD abyss-1.3.3.ebuild 873 RMD160 e1e206defde8ab96373ebb19553387e3c99ab71e SHA1 df67583a5595513a586dee3161d52b1b0ea1b9d9 SHA256 dbc2c57194f41caba4820c458c16bf2f11a0310587b4a452a2e02a8a4a7ff1cf +MISC ChangeLog 1827 RMD160 6178dea2eb7c5fce8b27b9e4cab7ae0e1dc32f82 SHA1 df9aa2f1865edea6e9a00982eec4909606cf1b01 SHA256 8b14c1c8786c97767ce038a6399d53a75e66c709a32560a71901a850e34dac9e MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.11 (GNU/Linux) -iEYEARECAAYFAk5+UCEACgkQ8xSwyhbn2ObXkwCfelpYG96ZKAcyfn9DA485Sx0K -lxwAn36g1S/qsFeqp88FXx3YLOEATJJV -=MLp7 +iEYEARECAAYFAk/EOAoACgkQ8xSwyhbn2OaOUQCfTHGwvlwGUzLK1FvY/Aib5Z33 +GNQAoIlu/msapanyfYjVjXWtAtIE6A/C +=Gsiv -----END PGP SIGNATURE----- diff --git a/sci-biology/abyss/abyss-1.3.3.ebuild b/sci-biology/abyss/abyss-1.3.3.ebuild new file mode 100644 index 000000000000..edc248a34395 --- /dev/null +++ b/sci-biology/abyss/abyss-1.3.3.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.3.ebuild,v 1.1 2012/05/29 02:44:21 weaver Exp $ + +EAPI="4" + +inherit autotools + +DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" +HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/" +SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz" + +LICENSE="abyss" +SLOT="0" +IUSE="+mpi openmp" +KEYWORDS="~amd64 ~x86" + +DEPEND=" + dev-cpp/sparsehash + mpi? ( virtual/mpi )" +RDEPEND="${DEPEND}" + +# todo: --enable-maxk=N configure option +# todo: fix automagic mpi toggling + +src_prepare() { + sed -i -e "s/-Werror//" configure.ac || die #365195 + sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die + eautoreconf +} + +src_configure() { + econf \ + $(use_enable openmp) +} |