New upstream version

Package-Manager: portage-2.1.1

4 files changed, 63 insertions, 5 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 69eb8f3d65f8..b6881eb4c37a 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.70 2006/08/19 22:56:30 weeve Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.71 2006/09/12 20:24:54 ribosome Exp $
+
+*rebase-609 (12 Sep 2006)
+
+  12 Sep 2006; Olivier Fisette <ribosome@gentoo.org> +rebase-609.ebuild:
+  New upstream version.
 
   19 Aug 2006; Jason Wever <weeve@gentoo.org> rebase-608.ebuild:
   Added ~sparc keyword.
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 53b90f382741..85974744d89c 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -4,6 +4,7 @@ DIST rebase-604.tar.bz2 182610
 DIST rebase-606.tar.bz2 183617 RMD160 7dea5a428a797b359c5bd34c698f093927a94be0 SHA1 36dbf47c2647b1cf676ce55ed561db1e439e6e6e SHA256 13ccca9937b7053ddda2f1cdeac88cc39eb5938540507089ff249d30f403244e
 DIST rebase-607.tar.bz2 183819 RMD160 5c759b198c25e279d628897129e28b32081f9dbd SHA1 c6b59fac35e7451be2a6bee1029b406ef97d15a0 SHA256 84f8a44535f566629f2d4ce3af92bb369e51a42550a923e732d1efa54e1f4f67
 DIST rebase-608.tar.bz2 184005 RMD160 1bc2d4f3af896ba05119a38fa99d40a9634419e6 SHA1 d1b8c22770055389b4f1fbb0ec81f2c79b30f28d SHA256 4ed73c49f51972787cac53380fbc2e82aae3e8eab14799897a4f49a8a93192c0
+DIST rebase-609.tar.bz2 183952 RMD160 10b256836aabde8b16c46999f26b4b1313410ba8 SHA1 5b7ae6f1c83548b6559857511086fa8accfbd8a9 SHA256 a5c9a5314675784c81a0e1a49e252e9ce18927ac4aa97cea5f8b8bc82876d4e2
 EBUILD rebase-601-r1.ebuild 1362 RMD160 556354221ec7dd2f7a51e807ec0407c542c4da65 SHA1 1a16ce06899ebba500c87ec265ebd2605ff1ea93 SHA256 36682ab03451e3fdd846492f9ec75fbd33fe1dde2b8954028941f6bb6db428bd
 MD5 48be5f714a92b26f62cdc66989d9d09a rebase-601-r1.ebuild 1362
 RMD160 556354221ec7dd2f7a51e807ec0407c542c4da65 rebase-601-r1.ebuild 1362
@@ -28,10 +29,14 @@ EBUILD rebase-608.ebuild 1348 RMD160 25ce3d901b615473ff93509f605e4dcd29b7517f SH
 MD5 f13d76f128de243bf2629b0d644792d3 rebase-608.ebuild 1348
 RMD160 25ce3d901b615473ff93509f605e4dcd29b7517f rebase-608.ebuild 1348
 SHA256 cbf2faa52fe5a83fae3709237e5ca105f2441897840cc47e6dd07283544743b6 rebase-608.ebuild 1348
-MISC ChangeLog 9440 RMD160 d8f1146abfbb6f17013955b8b05fed844ba7bf38 SHA1 470aef136b1e9a100cfed1eac02fb1a68737afb1 SHA256 4d8dd1e2e7ac0dc56b88f47ddb79cca2229e5f1e0963b2a25537797cc1a006cb
-MD5 c3e8f8d3170edea21a7e11f5d4aa6bb5 ChangeLog 9440
-RMD160 d8f1146abfbb6f17013955b8b05fed844ba7bf38 ChangeLog 9440
-SHA256 4d8dd1e2e7ac0dc56b88f47ddb79cca2229e5f1e0963b2a25537797cc1a006cb ChangeLog 9440
+EBUILD rebase-609.ebuild 1352 RMD160 566e46d76f28ae9df9f6d836b895c8f90b093127 SHA1 99c242e8006fa4fd6c866b0334dd431e1a03adf1 SHA256 e93ee809dd5718c01cb50017927e959972184eb9d0d8bd08e0e114b1d8e32acd
+MD5 f4364368fe42f3ad6928eb1bbe0b6d52 rebase-609.ebuild 1352
+RMD160 566e46d76f28ae9df9f6d836b895c8f90b093127 rebase-609.ebuild 1352
+SHA256 e93ee809dd5718c01cb50017927e959972184eb9d0d8bd08e0e114b1d8e32acd rebase-609.ebuild 1352
+MISC ChangeLog 9568 RMD160 4bdd9cc67cb50d2a4daa3467515404cb06a554ef SHA1 98b56de381e8ebd1807de91c82c724d4b4c648cf SHA256 634c70646814523e326c0205b3f9aea81f639b56f7de186ae941350c9bd7d429
+MD5 311ad1c6192124c6dd7e5ee877ae013f ChangeLog 9568
+RMD160 4bdd9cc67cb50d2a4daa3467515404cb06a554ef ChangeLog 9568
+SHA256 634c70646814523e326c0205b3f9aea81f639b56f7de186ae941350c9bd7d429 ChangeLog 9568
 MISC metadata.xml 908 RMD160 c4dc96997a4563391f74a006ccecebd04b4ea8a3 SHA1 32a6173a7ffa2900bb3ae75267684c3c4901ba1d SHA256 cbff81a8c24eb49cf76d5e9a61a86415d79c60e2e8a15594975273ba0d0f35af
 MD5 a463e92a7c6c7832dc446b533dd7b454 metadata.xml 908
 RMD160 c4dc96997a4563391f74a006ccecebd04b4ea8a3 metadata.xml 908
@@ -54,3 +59,6 @@ SHA256 91eb35cd817846354eac57774e13a42786e63f7e53642746fa6a45d57b36e4a9 files/di
 MD5 76e809ff0ea737ddabcbab0ba28fdb2e files/digest-rebase-608 235
 RMD160 e8bf7950593fb89d5b41dfd20b3e5720f0e8b9f1 files/digest-rebase-608 235
 SHA256 32f260f2443e95af3dae0ffed023da9b539dedf1df5a35109256837d7e877c80 files/digest-rebase-608 235
+MD5 b436015189650454a42299b8651aa040 files/digest-rebase-609 235
+RMD160 8a452f6edec2662083dd49855e8b5d4ebd6048b7 files/digest-rebase-609 235
+SHA256 a62961629a2234f5dd3494401bb6cce3c9823450c3db77750a57e59b6c91b2a8 files/digest-rebase-609 235
diff --git a/sci-biology/rebase/files/digest-rebase-609 b/sci-biology/rebase/files/digest-rebase-609
new file mode 100644
index 000000000000..770af9bda96c
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-609
@@ -0,0 +1,3 @@
+MD5 f79a36d707b213799d8c0172ea0ebc1d rebase-609.tar.bz2 183952
+RMD160 10b256836aabde8b16c46999f26b4b1313410ba8 rebase-609.tar.bz2 183952
+SHA256 a5c9a5314675784c81a0e1a49e252e9ce18927ac4aa97cea5f8b8bc82876d4e2 rebase-609.tar.bz2 183952
diff --git a/sci-biology/rebase/rebase-609.ebuild b/sci-biology/rebase/rebase-609.ebuild
new file mode 100644
index 000000000000..50185777031c
--- /dev/null
+++ b/sci-biology/rebase/rebase-609.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-609.ebuild,v 1.1 2006/09/12 20:24:54 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+LICENSE="public-domain"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc-macos ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \
+			-protofile proto.${PV} || die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${PV} proto.${PV} || die \
+			"Failed to install raw database."
+	fi
+	newdoc REBASE.DOC README || die "Failed to install documentation."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup} || die \
+			"Failed to install EMBOSS data files."
+		insinto /usr/share/EMBOSS/data
+		doins embossre.equ || die "Failed to install enzyme prototypes file."
+	fi
+}