Version bump (fixes bug #218232).

Package-Manager: portage-2.1.5_rc3

4 files changed, 53 insertions, 6 deletions

diff --git a/sci-biology/paml/ChangeLog b/sci-biology/paml/ChangeLog
index c2a2b9967f02..76b367db7884 100644
--- a/sci-biology/paml/ChangeLog
+++ b/sci-biology/paml/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/paml
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.2 2007/11/22 13:26:59 markusle Exp $
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.3 2008/04/20 11:11:20 markusle Exp $
+
+*paml-4b (20 Apr 2008)
+
+  20 Apr 2008; Markus Dittrich <markusle@gentoo.org> +paml-4b.ebuild:
+  Version bump (fixes bug #218232).
 
 *paml-4a (22 Nov 2007)
 
diff --git a/sci-biology/paml/Manifest b/sci-biology/paml/Manifest
index 36982ee2d80b..936464c45388 100644
--- a/sci-biology/paml/Manifest
+++ b/sci-biology/paml/Manifest
@@ -1,6 +1,8 @@
 DIST paml3.15.tar.gz 2364043 RMD160 b38655012237f9237a1c9474746f504804395045 SHA1 0628b3557a20ba8a9a173c39fec2093f056e1050 SHA256 f698b1d57b514e5e06e746899eae1245d098e96881e2a31c9b8fc956beb4f62a
 DIST paml4a.tar.gz 2377543 RMD160 5be2b6e82f0abc52e1e4251a0b8728e4cece684b SHA1 7f1d8b40f27d735385735cc1652b6bf5a7aa1c06 SHA256 436968adfad51c0b9f28a5bc1196a5e123005b8e9c6df0c4200d791b7ed90f4e
+DIST paml4b.tar.gz 2380479 RMD160 4772ee6c736cc80cc299086c3f18446c22316321 SHA1 adbea6d18d3ea7f87ec37f14a1fe9cabecd1075f SHA256 2b8ebb8f276a822f7589fffe54ee31e170577b811e256536649c793e57d5a94a
 EBUILD paml-3.15.ebuild 799 RMD160 1590abccf695a390f4ebdd875f88bea662fcaba1 SHA1 cda700a52156d4441a561078aa8c6de216d14c61 SHA256 880d7c220b0ae9f1f10f20d5a1cc7a549a29d7d918165f0a0a93d6ad4a4884f7
-EBUILD paml-4a.ebuild 1091 RMD160 f9ce007b3ff4c1aeb80ff23b27b837db0954742b SHA1 ced1e66b0ed5e82f06a4d89f7b351d9e895ee830 SHA256 dcfbaafe1e62c521e91c32413811e75b60078ba167957b066537c6177e0366ae
-MISC ChangeLog 513 RMD160 069df8f31d5ad77b6ad4b497088478fecadb836d SHA1 60af739cff8e1edcce3b4ec0074dd089d64285be SHA256 5156d6a6e9ccb09c7d29720f0d1284040c42b54d0deec78b505ec107265d9b40
+EBUILD paml-4a.ebuild 1091 RMD160 a622f5b7952f73d1460ba93f87bbc7f77909f1fa SHA1 fb54e9266541e2ff23c6f610e4e382e03b5100d8 SHA256 f42967e0be8ce0a420f303b366ec895430cbd965269e9e9c22fe08811f108fb0
+EBUILD paml-4b.ebuild 1098 RMD160 aae656e556014013603f048c7bfa950cbf668e61 SHA1 a3326fc7c9f0409116dc00395241b749d043dc7a SHA256 7d0a9eec0b66114a6e1a201de8e5909f84dfd74b57fc81e3c76d247582b55d13
+MISC ChangeLog 644 RMD160 bf32f2573d8888379d01f8e9db5d01140f4ed588 SHA1 43ad58ccaf95f592dcfe394d570427cd51617587 SHA256 d7d102ec5ba7dcd33433f8143354d73f475d7416012f4f574dc1e281c956a388
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
diff --git a/sci-biology/paml/paml-4a.ebuild b/sci-biology/paml/paml-4a.ebuild
index ded1fad3745c..a47b92d6794e 100644
--- a/sci-biology/paml/paml-4a.ebuild
+++ b/sci-biology/paml/paml-4a.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2007 Gentoo Foundation
+# Copyright 1999-2008 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4a.ebuild,v 1.1 2007/11/22 13:26:59 markusle Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4a.ebuild,v 1.2 2008/04/20 11:11:20 markusle Exp $
 
 inherit toolchain-funcs
 
diff --git a/sci-biology/paml/paml-4b.ebuild b/sci-biology/paml/paml-4b.ebuild
new file mode 100644
index 000000000000..58aab90bf711
--- /dev/null
+++ b/sci-biology/paml/paml-4b.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4b.ebuild,v 1.1 2008/04/20 11:11:20 markusle Exp $
+
+inherit toolchain-funcs
+
+MY_PV="${PV:0:1}"
+MY_P="${PN}${MY_PV}"
+DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood"
+HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
+SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz"
+LICENSE="free-noncomm"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE=""
+RDEPEND=""
+DEPEND="${RDEPEND}"
+S="${WORKDIR}/${MY_P}"
+
+src_compile() {
+	cd src
+	emake \
+		-f Makefile.UNIX \
+		CC="$(tc-getCC)" \
+		CFLAGS="${CFLAGS}" \
+		|| die "make failed"
+}
+
+src_install() {
+	pushd "${S}"/src
+	dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2
+	popd
+	dodoc README.txt doc/*
+	insinto /usr/share/${PN}/control
+	doins *.ctl || die "Failed to install control files"
+	insinto /usr/share/${PN}/dat
+	doins stewart* *.dat dat/* || die "Failed to install data files"
+	insinto /usr/share/${PN}
+	doins -r examples/ || die "Failed to install examples"
+}