New version

Package-Manager: portage-2.1-r1

4 files changed, 77 insertions, 7 deletions

diff --git a/sci-biology/cutg/ChangeLog b/sci-biology/cutg/ChangeLog
index c951e52f02ff..3c6371e5f4fe 100644
--- a/sci-biology/cutg/ChangeLog
+++ b/sci-biology/cutg/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/cutg
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.40 2006/04/08 10:29:16 blubb Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.41 2006/06/26 03:24:14 ribosome Exp $
+
+*cutg-151 (26 Jun 2006)
+
+  26 Jun 2006; Olivier Fisette <ribosome@gentoo.org> +cutg-151.ebuild:
+  New version.
 
   08 Apr 2006; Simon Stelling <blubb@gentoo.org> cutg-150.ebuild:
   stable on amd64
diff --git a/sci-biology/cutg/Manifest b/sci-biology/cutg/Manifest
index 80e802f1e3ed..63485cc6733f 100644
--- a/sci-biology/cutg/Manifest
+++ b/sci-biology/cutg/Manifest
@@ -1,15 +1,31 @@
-MD5 a378068e9f9eb40e51e6767a95e04547 ChangeLog 5267
-RMD160 009c2d36a5fd994ad0721a618d025cd1fb6974f3 ChangeLog 5267
-SHA256 12027c7092830028bcc3d813c0d3699f1b704ca79af15a1441f496074a701253 ChangeLog 5267
+DIST CUTG.148.tar.gz 144554145
+DIST CUTG.149.tar.gz 152014260
+DIST CUTG.150.tar.gz 158138458
+DIST CUTG.151.tar.gz 165813396 RMD160 77a304321f1535af8bb6eff1ce5c8e559a64535c SHA1 0327ccf522d9e38ab6e261bb0e2077533bf1892b SHA256 8184ac1a99ba54791d4ca672d514daeafd7e6736e76524fbbd7b3930d7d8534f
+EBUILD cutg-148.ebuild 1283 RMD160 066976dccff01fc116c4e8d40f0b9df461e85680 SHA1 b1082a29fd41c6c3776e59d62219ea2d10ad727c SHA256 e7927aa1d05718deaa47f4e054d6a72f20985bd17b01d3b9760b17f601c5afb6
 MD5 65c2bce45a1bf7a207f99d26fab7d967 cutg-148.ebuild 1283
 RMD160 066976dccff01fc116c4e8d40f0b9df461e85680 cutg-148.ebuild 1283
 SHA256 e7927aa1d05718deaa47f4e054d6a72f20985bd17b01d3b9760b17f601c5afb6 cutg-148.ebuild 1283
+EBUILD cutg-149.ebuild 1299 RMD160 e2cbbc115b00bc19c13826076ba2ad4609982670 SHA1 f1b0c61f277642cf33628ed32282a5a1ec7cbfee SHA256 b639dccd35774ed946e13efe8177308a731d89bf192af9487dc24ba16fe20f00
 MD5 39be5de70b1ef38f3372177fe05a6223 cutg-149.ebuild 1299
 RMD160 e2cbbc115b00bc19c13826076ba2ad4609982670 cutg-149.ebuild 1299
 SHA256 b639dccd35774ed946e13efe8177308a731d89bf192af9487dc24ba16fe20f00 cutg-149.ebuild 1299
+EBUILD cutg-150.ebuild 1298 RMD160 bfa5c4215e1089fb8c9dc14ee14080d2f9c16a8f SHA1 c29e97c44bd2a8917da913f40327abb72a7f3dc7 SHA256 caaaf1b4cc36afc5e0a30000581c2ceb347964a0ad7cf2e6ea4b47fdad8e0f4c
 MD5 78c197e89cc93365826c4a923271d0e5 cutg-150.ebuild 1298
 RMD160 bfa5c4215e1089fb8c9dc14ee14080d2f9c16a8f cutg-150.ebuild 1298
 SHA256 caaaf1b4cc36afc5e0a30000581c2ceb347964a0ad7cf2e6ea4b47fdad8e0f4c cutg-150.ebuild 1298
+EBUILD cutg-151.ebuild 1306 RMD160 c64ac7aaac5946ad8e7a02185617aba52515a4a3 SHA1 77cf06412bbb24344b8743747957c4668d694d23 SHA256 e3eb670c1d8743622c4c6abf5dec98207aca88f56427ae91b3092380daeaa0e5
+MD5 20ad162242bad9cb4db12634f621d494 cutg-151.ebuild 1306
+RMD160 c64ac7aaac5946ad8e7a02185617aba52515a4a3 cutg-151.ebuild 1306
+SHA256 e3eb670c1d8743622c4c6abf5dec98207aca88f56427ae91b3092380daeaa0e5 cutg-151.ebuild 1306
+MISC ChangeLog 5382 RMD160 01061dc7460cf8fc732b9ddd7a3646c27f939fed SHA1 cee10ea9443a2aadb2463b09fa35b53f0b122110 SHA256 fd1655d0c86a53d0f8cf9efe200b1cf6a46c17c2e75abf7c72f409a143b75ef3
+MD5 fbb3b677acad87b6a2ad2d964803d4cd ChangeLog 5382
+RMD160 01061dc7460cf8fc732b9ddd7a3646c27f939fed ChangeLog 5382
+SHA256 fd1655d0c86a53d0f8cf9efe200b1cf6a46c17c2e75abf7c72f409a143b75ef3 ChangeLog 5382
+MISC metadata.xml 594 RMD160 2458f9e63bfdb7f5600d072a276719b0758b560d SHA1 25f2384069c1110c9c9852eae7f773d37f23df1d SHA256 d64f4ad5e9786d8466bd63532befc20cd8bd0a24c386695181e1124548f09717
+MD5 d14f29edef39d8d89b39a5787c3d141c metadata.xml 594
+RMD160 2458f9e63bfdb7f5600d072a276719b0758b560d metadata.xml 594
+SHA256 d64f4ad5e9786d8466bd63532befc20cd8bd0a24c386695181e1124548f09717 metadata.xml 594
 MD5 8fe4ad8cd05d6466bcf6c253c5a18ba4 files/digest-cutg-148 63
 RMD160 ebcd898db2a16105c83364922cf4d9c9c87e4188 files/digest-cutg-148 63
 SHA256 db5c885fe2d472f2c28c3e44d257622355d5d133aeb79a8e8a73d188f5151b18 files/digest-cutg-148 63
@@ -19,6 +35,6 @@ SHA256 0a48b70ac285ce2291ee2db83c5d22747ad6e5c6e4a86f36901ae07e93abecde files/di
 MD5 1297dd4cd107330a01778650103a4ad1 files/digest-cutg-150 63
 RMD160 cbbbd65e14d3cb26b720446c300d53fb7bc40ccc files/digest-cutg-150 63
 SHA256 f4be68f5e245af09a65bdc89e3d120483ddf05212bf1bffc49c860c4743f9aac files/digest-cutg-150 63
-MD5 d14f29edef39d8d89b39a5787c3d141c metadata.xml 594
-RMD160 2458f9e63bfdb7f5600d072a276719b0758b560d metadata.xml 594
-SHA256 d64f4ad5e9786d8466bd63532befc20cd8bd0a24c386695181e1124548f09717 metadata.xml 594
+MD5 f1527b097ae96fc58677ce4c70027768 files/digest-cutg-151 235
+RMD160 1adc6d33c05fb22b56fe0de042ba749972bee9db files/digest-cutg-151 235
+SHA256 0cd36275bb52878eb43a29bbbdce5479de30275ef352bf6c015745dc2f4cd5b8 files/digest-cutg-151 235
diff --git a/sci-biology/cutg/cutg-151.ebuild b/sci-biology/cutg/cutg-151.ebuild
new file mode 100644
index 000000000000..8a5c22fd0e34
--- /dev/null
+++ b/sci-biology/cutg/cutg-151.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-151.ebuild,v 1.1 2006/06/26 03:24:14 ribosome Exp $
+
+DESCRIPTION="Codon usage tables calculated from GenBank"
+LICENSE="public-domain"
+HOMEPAGE="http://www.kazusa.or.jp/codon/"
+SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc-macos ~ppc64 ~x86"
+
+DEPEND="emboss? ( sci-biology/emboss )"
+
+S="${WORKDIR}"
+
+src_compile() {
+	if use emboss; then
+		mkdir CODONS
+		echo
+		einfo "Indexing CUTG for usage with EMBOSS."
+		EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
+			"Indexing CUTG failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		mkdir -p "${D}"usr/share/${PN}
+		mv *.codon *.spsum "${D}"/usr/share/${PN} || die \
+			"Installing raw CUTG database failed."
+	fi
+	dodoc README
+	if use emboss; then
+		mkdir -p "${D}"/usr/share/EMBOSS/data/CODONS
+		cd CODONS
+		for file in *; do
+			mv ${file} "${D}"/usr/share/EMBOSS/data/CODONS || die \
+				"Installing the EMBOSS-indexed database failed."
+		done
+	fi
+}
diff --git a/sci-biology/cutg/files/digest-cutg-151 b/sci-biology/cutg/files/digest-cutg-151
new file mode 100644
index 000000000000..500b02ebf419
--- /dev/null
+++ b/sci-biology/cutg/files/digest-cutg-151
@@ -0,0 +1,3 @@
+MD5 f71e5ba098a4b6a22171b7b67da18d8e CUTG.151.tar.gz 165813396
+RMD160 77a304321f1535af8bb6eff1ce5c8e559a64535c CUTG.151.tar.gz 165813396
+SHA256 8184ac1a99ba54791d4ca672d514daeafd7e6736e76524fbbd7b3930d7d8534f CUTG.151.tar.gz 165813396