Moved from app-sci/clustalw to sci-biology/clustalw.

5 files changed, 99 insertions, 0 deletions

diff --git a/sci-biology/clustalw/ChangeLog b/sci-biology/clustalw/ChangeLog
new file mode 100644
index 000000000000..b454e2dd0ee4
--- /dev/null
+++ b/sci-biology/clustalw/ChangeLog
@@ -0,0 +1,41 @@
+# ChangeLog for app-sci/clustalw
+# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/ChangeLog,v 1.1 2004/12/23 18:55:17 ribosome Exp $
+
+*clustalw-1.83-r1 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +clustalw-1.83-r1.ebuild:
+  Moved from app-sci/clustalw to sci-biology/clustalw.
+
+  21 Nov 2004; Karol Wojtaszek <sekretarz@gentoo.org>
+  clustalw-1.83-r1.ebuild:
+  Added to ~amd64, bug #71865
+
+  14 Oct 2004; Olivier Fisette <ribosome@gentoo.org> clustalw-1.83-r1.ebuild:
+  Fixed gcc with gcc.eclass. gongloo left some mistakes.
+
+  14 Oct 2004; Hasan Khalil <gongloo@gentoo.org> clustalw-1.83-r1.ebuild:
+  Fixed gcc with gcc.eclass. Keyworded ~ppc-macos.
+
+  05 Oct 2004; Olivier Fisette <ribosome@gentoo.org> clustalw-1.83-r1.ebuild:
+  Fixed overly verbose description.
+
+*clustalw-1.83-r1 (29 Sep 2004)
+
+  29 Sep 2004; Olivier Fisette <ribosome@gentoo.org> +clustalw-1.83-r1.ebuild,
+  -clustalw-1.83.ebuild:
+  Fixed bugs pertaining to "CFLAGS" and help files.
+
+  01 Jul 2004; Jeremy Huddleston <eradicator@gentoo.org> clustalw-1.83.ebuild:
+  virtual/glibc -> virtual/libc
+
+  19 Apr 2004; Patrick Kursawe <phosphan@gentoo.org> clustalw-1.83.ebuild:
+  Bumped to stable, using epatch now
+
+*clustalw-1.83 (04 Apr 2003)
+
+  04 Apr 2003; Michael Imhof <tantive@gentoo.org> :
+  Initial release.
+  This ebuild was submitted by Gontran Zepeda <gontran@gontran.net>.
+  Should close #18679.
diff --git a/sci-biology/clustalw/Manifest b/sci-biology/clustalw/Manifest
new file mode 100644
index 000000000000..50bbff035654
--- /dev/null
+++ b/sci-biology/clustalw/Manifest
@@ -0,0 +1,14 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+MD5 362ab7f831a113dad4938a3cdcdd0334 clustalw-1.83-r1.ebuild 1054
+MD5 d4ab4ced68bf7a52aa377a61559afc45 ChangeLog 1306
+MD5 8c623e53daafa025137077c6b65815bd metadata.xml 156
+MD5 59931bb873b284e7ab0b7c452e87d075 files/digest-clustalw-1.83-r1 69
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v1.2.6 (GNU/Linux)
+
+iD8DBQFBn9h0Z/iYVBmujdURAmWBAKDhD5MF+KbxLqURWpNP30ONePZayQCeOPe6
+mm/hkqVb1vQWOvle8FycNLg=
+=2TOf
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/clustalw/clustalw-1.83-r1.ebuild b/sci-biology/clustalw/clustalw-1.83-r1.ebuild
new file mode 100644
index 000000000000..8595b5a70d07
--- /dev/null
+++ b/sci-biology/clustalw/clustalw-1.83-r1.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalw/clustalw-1.83-r1.ebuild,v 1.1 2004/12/23 18:55:17 ribosome Exp $
+
+inherit gcc
+
+DESCRIPTION="General purpose multiple alignment program for DNA and proteins"
+HOMEPAGE="http://www.embl-heidelberg.de/~seqanal/"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/${PN}${PV}.UNIX.tar.gz"
+
+LICENSE="clustalw"
+SLOT="0"
+KEYWORDS="alpha ppc sparc x86 ~ppc-macos ~amd64"
+IUSE=""
+
+DEPEND="virtual/libc"
+
+S=${WORKDIR}/${PN}${PV}
+
+src_unpack(){
+	unpack ${A}
+	cd ${S}
+	sed -i -e "s/CC	= cc/CC	= $(gcc-getCC)/" makefile
+	sed -i -e "s/CFLAGS  = -c -O/CFLAGS  = -c ${CFLAGS}/" makefile
+	sed -i -e "s/LFLAGS	= -O -lm/LFLAGS	= -lm ${CFLAGS}/" makefile
+	sed -i -e "s%clustalw_help%/usr/share/doc/${PF}/clustalw_help%" clustalw.c
+}
+
+src_compile() {
+	emake || die
+}
+
+src_install() {
+	dobin clustalw || die
+	dodoc README clustalv.doc clustalw.doc clustalw.ms
+	insinto /usr/share/doc/${PF}
+	doins clustalw_help
+}
diff --git a/sci-biology/clustalw/files/digest-clustalw-1.83-r1 b/sci-biology/clustalw/files/digest-clustalw-1.83-r1
new file mode 100644
index 000000000000..f2c2bf79faef
--- /dev/null
+++ b/sci-biology/clustalw/files/digest-clustalw-1.83-r1
@@ -0,0 +1 @@
+MD5 dc240277e5bb14ffc106d4a5fda87752 clustalw1.83.UNIX.tar.gz 166863
diff --git a/sci-biology/clustalw/metadata.xml b/sci-biology/clustalw/metadata.xml
new file mode 100644
index 000000000000..b229aec85b8f
--- /dev/null
+++ b/sci-biology/clustalw/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+</pkgmetadata>