diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-03-16 04:36:47 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-03-16 04:36:47 +0000 |
| commit | f754c7b037ff63e8657a3e1de403bd82d6ad79df (patch) | |
| tree | 4e915a1d89eed622010a373cdb65d522e08830c7 /sci-biology/bowtie | |
| parent | fix typo (diff) | |
| download | historical-f754c7b037ff63e8657a3e1de403bd82d6ad79df.tar.gz historical-f754c7b037ff63e8657a3e1de403bd82d6ad79df.tar.bz2 historical-f754c7b037ff63e8657a3e1de403bd82d6ad79df.zip | |
Import from Science overlay
Package-Manager: portage-2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64
Diffstat (limited to 'sci-biology/bowtie')
| -rw-r--r-- | sci-biology/bowtie/ChangeLog | 13 | ||||
| -rw-r--r-- | sci-biology/bowtie/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.9.9.1.ebuild | 28 | ||||
| -rw-r--r-- | sci-biology/bowtie/metadata.xml | 9 |
4 files changed, 54 insertions, 0 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog new file mode 100644 index 000000000000..d9b7cca16b7b --- /dev/null +++ b/sci-biology/bowtie/ChangeLog @@ -0,0 +1,13 @@ +# ChangeLog for sci-biology/bowtie +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.1 2009/03/16 04:36:47 weaver Exp $ + +*bowtie-0.9.9.1 (15 Mar 2009) + + 15 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +bowtie-0.9.9.1.ebuild: + Import from Science overlay + + 27 Feb 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: + New package sci-biology/bowtie, ebuild written by me + diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest new file mode 100644 index 000000000000..cf5fbca65fad --- /dev/null +++ b/sci-biology/bowtie/Manifest @@ -0,0 +1,4 @@ +DIST bowtie-0.9.9.1-src.zip 10368568 RMD160 91caef019a7dd7f576b11c13fe1fbf9233ee4924 SHA1 701d6ad400f624085d38e8106a3c3779860d0be0 SHA256 5b652222f3934d9127c77f779cdff18fd37ef913fe9207d77e978eada11b0e31 +EBUILD bowtie-0.9.9.1.ebuild 805 RMD160 17b2ac28333e3539fa802ead43e1803cc78e6c60 SHA1 564f6f6253a35f7267459ae3409367aafd7c6751 SHA256 d4bb2f9be5422fbf5422558021c1dc264767237860ca727c4d98470bdb384895 +MISC ChangeLog 479 RMD160 ec3adf1bc0fe4fbebb7e07d3ef4fce07a1ceb4eb SHA1 44f3dfab87ad8fc4d9f5ffe742055cd0bf0b8578 SHA256 6abffe20e4a655063d3203e1f0de90ef4ee0b4085a5993228348dadbfad39dbc +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/bowtie/bowtie-0.9.9.1.ebuild b/sci-biology/bowtie/bowtie-0.9.9.1.ebuild new file mode 100644 index 000000000000..dfcd68bedc13 --- /dev/null +++ b/sci-biology/bowtie/bowtie-0.9.9.1.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.9.9.1.ebuild,v 1.1 2009/03/16 04:36:47 weaver Exp $ + +DESCRIPTION="An ultrafast memory-efficient short read aligner" +HOMEPAGE="http://bowtie-bio.sourceforge.net/" +SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="app-arch/unzip" +RDEPEND="" + +# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) + +src_unpack() { + unpack ${A} + sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die +} + +src_install() { + dobin bowtie bowtie-* || die + newman MANUAL bowtie.1 + dodoc AUTHORS NEWS TUTORIAL +} diff --git a/sci-biology/bowtie/metadata.xml b/sci-biology/bowtie/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/bowtie/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |