Changed herd for sci-biology

Package-Manager: portage-2.1-r1

57 files changed, 817 insertions, 237 deletions

diff --git a/sci-biology/aaindex/Manifest b/sci-biology/aaindex/Manifest
index 9c19ed2a99ac..95fc350c4ce9 100644
--- a/sci-biology/aaindex/Manifest
+++ b/sci-biology/aaindex/Manifest
@@ -1,4 +1,16 @@
-MD5 a7d475585efcb041702bbc5d70bb57c6 ChangeLog 2307
+DIST aaindex-7.0.tar.bz2 94056
+EBUILD aaindex-7.0.ebuild 1126 RMD160 2f4ae5fac671a2dedb8abe252c83be2723d49e82 SHA1 47f5be5b8f2f33c48b8f3dd7cfa85f6b778e90d0 SHA256 dab8771a7a1f851ab5612b227af648e00bdd0cf30b2f39ce8fac7a4e2c300881
 MD5 fc687bca6a32f65e3998983e4c8e512d aaindex-7.0.ebuild 1126
+RMD160 2f4ae5fac671a2dedb8abe252c83be2723d49e82 aaindex-7.0.ebuild 1126
+SHA256 dab8771a7a1f851ab5612b227af648e00bdd0cf30b2f39ce8fac7a4e2c300881 aaindex-7.0.ebuild 1126
+MISC ChangeLog 2307 RMD160 7d95ae7312addd602eb9aef0e1b4027046153afb SHA1 7e30a92fb9391cfa684980d7a789b28618f248ab SHA256 0fe6b781a74375ec74810af4563bda3e1d85efcb7a8a63f50f348999fb4b3a96
+MD5 a7d475585efcb041702bbc5d70bb57c6 ChangeLog 2307
+RMD160 7d95ae7312addd602eb9aef0e1b4027046153afb ChangeLog 2307
+SHA256 0fe6b781a74375ec74810af4563bda3e1d85efcb7a8a63f50f348999fb4b3a96 ChangeLog 2307
+MISC metadata.xml 1318 RMD160 06733e015e5bea1426d341a5510982f4692da97c SHA1 14d3ef2a711c44b92d0801e1f5ce429e59fbfbf0 SHA256 7ae3adabe021a43e4abedd68d24352718b3d0eca66433d96c700ecfffc091207
+MD5 7b4367ee8d5bb22caff546e4ae7d99c4 metadata.xml 1318
+RMD160 06733e015e5bea1426d341a5510982f4692da97c metadata.xml 1318
+SHA256 7ae3adabe021a43e4abedd68d24352718b3d0eca66433d96c700ecfffc091207 metadata.xml 1318
 MD5 5ec69cfa775115b1de4b49fd85fcc7b9 files/digest-aaindex-7.0 63
-MD5 d508af45f2137bf67613eb18d9f6f831 metadata.xml 1310
+RMD160 d8fba1b2e2543ee809490e1f0d67c8ca83cde8b0 files/digest-aaindex-7.0 63
+SHA256 e9d574df4d30afb79a7087540857c27915140e2cf99a6ed2c29274d401d0059b files/digest-aaindex-7.0 63
diff --git a/sci-biology/ariadne/Manifest b/sci-biology/ariadne/Manifest
index 54823de997cc..5d4305b97b72 100644
--- a/sci-biology/ariadne/Manifest
+++ b/sci-biology/ariadne/Manifest
@@ -1,4 +1,16 @@
-MD5 1dc98a1d921066eb1687963e74736512 ChangeLog 967
+DIST ariadne-1.3.tar.Z 69427
+EBUILD ariadne-1.3-r1.ebuild 924 RMD160 3184f3f2b520801afbaccc3dc49fe4df18e79735 SHA1 654ed1b32b38da2992d97f7012480e9d50559fae SHA256 d946cc1c4de2e65e118652e801d59337d918e8842abbc97b730562ecc1886727
 MD5 66fafc5a8d34c2dacc0abbd71677c42d ariadne-1.3-r1.ebuild 924
+RMD160 3184f3f2b520801afbaccc3dc49fe4df18e79735 ariadne-1.3-r1.ebuild 924
+SHA256 d946cc1c4de2e65e118652e801d59337d918e8842abbc97b730562ecc1886727 ariadne-1.3-r1.ebuild 924
+MISC ChangeLog 967 RMD160 24ba5fed30ffef4e6fdce0b86aed0d5cd6bee252 SHA1 048aba438d578ae38819a6cc4de4305dcf6b2733 SHA256 508f68ba81627e7106b456ce333ba64624cf7a4dac8228234ed5e15d4f2b9b32
+MD5 1dc98a1d921066eb1687963e74736512 ChangeLog 967
+RMD160 24ba5fed30ffef4e6fdce0b86aed0d5cd6bee252 ChangeLog 967
+SHA256 508f68ba81627e7106b456ce333ba64624cf7a4dac8228234ed5e15d4f2b9b32 ChangeLog 967
+MISC metadata.xml 955 RMD160 0c5a764fffe3ee06b8b19def0cdbcea1baeb14e4 SHA1 acc71b98260e75475c0df9a764214c0ae066e7c4 SHA256 94b61683ea5272be14e1a1a75dad670ce6cdddc1aa47261b4113b3abe77420f4
+MD5 1b8e5b9a7428839df6a138ea00937b3f metadata.xml 955
+RMD160 0c5a764fffe3ee06b8b19def0cdbcea1baeb14e4 metadata.xml 955
+SHA256 94b61683ea5272be14e1a1a75dad670ce6cdddc1aa47261b4113b3abe77420f4 metadata.xml 955
 MD5 2c1e987db0cdcd91873d0e7a4476bbad files/digest-ariadne-1.3-r1 61
-MD5 feb133611c8c1d9ca6db169db059426a metadata.xml 947
+RMD160 42b45f61585b7490e11b6ca9768c889a49ab5e51 files/digest-ariadne-1.3-r1 61
+SHA256 02f05f1d97a7226d2545db339abf82aaa6eeefb3191036af9e6f33e5b7c8e8e0 files/digest-ariadne-1.3-r1 61
diff --git a/sci-biology/bioperl-pipeline/Manifest b/sci-biology/bioperl-pipeline/Manifest
index 789b89aaf490..088fd9c73c36 100644
--- a/sci-biology/bioperl-pipeline/Manifest
+++ b/sci-biology/bioperl-pipeline/Manifest
@@ -1,14 +1,16 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
-MD5 7e35f9d2609cd8c9877930cd8752a4f5 ChangeLog 1173
+DIST bioperl-pipeline-0.1.tar.gz 633893
+EBUILD bioperl-pipeline-0.1.ebuild 1887 RMD160 aeabf508435936b90b82130caf3a0372bad31fca SHA1 22ad317764c7c7a796017b2e8d27d03561780786 SHA256 20c4cb17d9b06970642b7889a575d12f1de2b52bdcadc80c13af6eb523e7ab94
 MD5 24a000aef0648f0ad640f965156951cf bioperl-pipeline-0.1.ebuild 1887
+RMD160 aeabf508435936b90b82130caf3a0372bad31fca bioperl-pipeline-0.1.ebuild 1887
+SHA256 20c4cb17d9b06970642b7889a575d12f1de2b52bdcadc80c13af6eb523e7ab94 bioperl-pipeline-0.1.ebuild 1887
+MISC ChangeLog 1173 RMD160 5535ed5b2e47dfbe3ada3e0a2a0cb7d90171ecf7 SHA1 04e3a68a283c8a133e05b74ea1ef27af5a88c9af SHA256 692949f246e07657342b47e342dd77db8498d80eb2a9380871e86a741bfd4f4d
+MD5 7e35f9d2609cd8c9877930cd8752a4f5 ChangeLog 1173
+RMD160 5535ed5b2e47dfbe3ada3e0a2a0cb7d90171ecf7 ChangeLog 1173
+SHA256 692949f246e07657342b47e342dd77db8498d80eb2a9380871e86a741bfd4f4d ChangeLog 1173
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 cea8881ae00a651493915c7732732233 files/digest-bioperl-pipeline-0.1 72
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.2 (GNU/Linux)
-
-iD8DBQFDivGwtG5z4I8BtQoRAp+vAJ9PLc3uejDskEl57+9odTZGHAt/MQCaAloT
-HOYbo7Jz2ki25w2eieA76Ns=
-=eM9n
------END PGP SIGNATURE-----
+RMD160 c740221870f99234b294fbecfc49a4bc1067a2ea files/digest-bioperl-pipeline-0.1 72
+SHA256 1c0f43ce92ccecd8b5461f539ad95d9a70e48dc22b035f588d7465775acdf340 files/digest-bioperl-pipeline-0.1 72
diff --git a/sci-biology/bioperl-run/Manifest b/sci-biology/bioperl-run/Manifest
index a9874c5f1984..5a918ac3d2d0 100644
--- a/sci-biology/bioperl-run/Manifest
+++ b/sci-biology/bioperl-run/Manifest
@@ -1,15 +1,20 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
-MD5 3aa2552cccf16c1d5ed8257a66c1817d ChangeLog 2069
-MD5 ede6a317da6b1ba511beeb256cb71453 bioperl-run-1.4.ebuild 1303
+AUX bioperl-run-Pise-test-patch.diff 722 RMD160 85c3744bfc14db91971e4df2dfd967c5ad9f0310 SHA1 0498546ae9f12d0db5194c41a360910833870eac SHA256 84c8280f8d3af311b53c8b6edd4e6ffa9acc0824528d96d7f1c2537404d3e30f
 MD5 21ad123058f1e670f289ee1a87de4e82 files/bioperl-run-Pise-test-patch.diff 722
+RMD160 85c3744bfc14db91971e4df2dfd967c5ad9f0310 files/bioperl-run-Pise-test-patch.diff 722
+SHA256 84c8280f8d3af311b53c8b6edd4e6ffa9acc0824528d96d7f1c2537404d3e30f files/bioperl-run-Pise-test-patch.diff 722
+DIST bioperl-run-1.4.tar.gz 830774
+EBUILD bioperl-run-1.4.ebuild 1303 RMD160 042856b0ab449d9ffe203d4c0515f96c75b9930c SHA1 7dce164a3042784cf7ebdffdac3fa8a7447e318e SHA256 8d9a807e7e4cf4deff1b0f7cdc405bc324410c882bc70915128b70656b1a0ab2
+MD5 ede6a317da6b1ba511beeb256cb71453 bioperl-run-1.4.ebuild 1303
+RMD160 042856b0ab449d9ffe203d4c0515f96c75b9930c bioperl-run-1.4.ebuild 1303
+SHA256 8d9a807e7e4cf4deff1b0f7cdc405bc324410c882bc70915128b70656b1a0ab2 bioperl-run-1.4.ebuild 1303
+MISC ChangeLog 2069 RMD160 147bfc11b0fa887418b30095dd0473168f1ce1ea SHA1 a3a156d20bceb901bfa206f15ecc0e026c2bdf6e SHA256 7b8f7dd2d184dd4b5d34ac02cb0cffd6e3e24153ae5f06e8fd7b3237bcb56bfa
+MD5 3aa2552cccf16c1d5ed8257a66c1817d ChangeLog 2069
+RMD160 147bfc11b0fa887418b30095dd0473168f1ce1ea ChangeLog 2069
+SHA256 7b8f7dd2d184dd4b5d34ac02cb0cffd6e3e24153ae5f06e8fd7b3237bcb56bfa ChangeLog 2069
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 47db6a1f839dd45f8c891b5f6ab2ff2a files/digest-bioperl-run-1.4 67
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.1 (GNU/Linux)
-
-iD8DBQFD8KDXtG5z4I8BtQoRAkHUAJ0Qz6HVBKzEZD7s8BusuidMgkyzzwCeJ31U
-fYoVtBXCLz8R3ydd+orjQuY=
-=/OrV
------END PGP SIGNATURE-----
+RMD160 ea531db028c33bfb9ddd97545bfb5f852010f6d2 files/digest-bioperl-run-1.4 67
+SHA256 aa030e3823bd4e0cf56adc1264604e473fec0720814b358dd08472a7c28efe0a files/digest-bioperl-run-1.4 67
diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest
index 59ddd3fe8f86..ad3caa454dea 100644
--- a/sci-biology/bioperl/Manifest
+++ b/sci-biology/bioperl/Manifest
@@ -1,22 +1,16 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
-MD5 9e5a18a52d03ddc6842df7e30abdf057 ChangeLog 4839
-RMD160 afdd2829a2ec3a11280baa86003ba865b6b88840 ChangeLog 4839
-SHA256 0307e9c5d58f0d211fa14aa9868a5875adb9807bfe16366353955bbb8e36df46 ChangeLog 4839
+DIST bioperl-1.4.tar.bz2 4224508
+EBUILD bioperl-1.4.ebuild 1175 RMD160 535fbec35f4b5fe67860e612a74912d7fdc13891 SHA1 4af811ba1cc63cc8e10edada1dafa9f5bdb8cf84 SHA256 2893c9c0c7e575f149a329403f48da567a2d41d94d1c43f3718145f0b7433229
 MD5 bef7582493f4276b782acf2b0e90bb0e bioperl-1.4.ebuild 1175
 RMD160 535fbec35f4b5fe67860e612a74912d7fdc13891 bioperl-1.4.ebuild 1175
 SHA256 2893c9c0c7e575f149a329403f48da567a2d41d94d1c43f3718145f0b7433229 bioperl-1.4.ebuild 1175
+MISC ChangeLog 4839 RMD160 afdd2829a2ec3a11280baa86003ba865b6b88840 SHA1 4002045262b1ffa87cf07196287756cf83c06a30 SHA256 0307e9c5d58f0d211fa14aa9868a5875adb9807bfe16366353955bbb8e36df46
+MD5 9e5a18a52d03ddc6842df7e30abdf057 ChangeLog 4839
+RMD160 afdd2829a2ec3a11280baa86003ba865b6b88840 ChangeLog 4839
+SHA256 0307e9c5d58f0d211fa14aa9868a5875adb9807bfe16366353955bbb8e36df46 ChangeLog 4839
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 d5d0bc711fb345c9b91086c5d47e1442 files/digest-bioperl-1.4 65
 RMD160 f46f3ddc7b276e7c6a6381b0b6750cc1aba2a5b8 files/digest-bioperl-1.4 65
 SHA256 c9727f1eba04d582ab1ba559da3ab91f88e4ce32880b21021515af842bb0a199 files/digest-bioperl-1.4 65
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
-RMD160 f02847af149737bf8044b3de239c5bd4b42abca5 metadata.xml 254
-SHA256 3392ded43ad861595a8cfeb0441342fdbcd6e731b4793c3e8a22ff927ce09f27 metadata.xml 254
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.2.1 (GNU/Linux)
-
-iD8DBQFELG/HJrHF4yAQTrARAn9OAKCP6UEOKwGatPSztr3Sq0v3zHZ8pACcC0fD
-U8ceVbJCvmEDBRVUAje4Wf0=
-=nQZM
------END PGP SIGNATURE-----
diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest
index 0ea80dbb66f9..6d7d80c90dea 100644
--- a/sci-biology/biopython/Manifest
+++ b/sci-biology/biopython/Manifest
@@ -1,6 +1,24 @@
-MD5 4a2e7e473c7ff9107de6dd96e00443d4 ChangeLog 3081
+DIST biopython-1.40b.tar.gz 2821213
+DIST biopython-1.41.tar.gz 3807547
+EBUILD biopython-1.40b.ebuild 796 RMD160 68c9e75a6705159d83dd9304dfd204637f92d743 SHA1 68b14a0b4dcb181f7f8f16853483b22fbb851779 SHA256 6cdf5291dfc0f42f8ff4bdc7acd47c0aa6729aadc34548fa9b122b59fb7d559a
 MD5 ca3f484c64cdb795e9d87f40d09f02bd biopython-1.40b.ebuild 796
+RMD160 68c9e75a6705159d83dd9304dfd204637f92d743 biopython-1.40b.ebuild 796
+SHA256 6cdf5291dfc0f42f8ff4bdc7acd47c0aa6729aadc34548fa9b122b59fb7d559a biopython-1.40b.ebuild 796
+EBUILD biopython-1.41.ebuild 848 RMD160 e16a7574c7d746696a59c634eea9978712149048 SHA1 6a60a142aaa838ec40b79f650180c7d37d5e0cae SHA256 ef21c75a19531535af6b98a01a0c308b966d61781e98566216e0132c87d3ba1d
 MD5 0e8a0e66a4e14146021c927ecaf2949a biopython-1.41.ebuild 848
+RMD160 e16a7574c7d746696a59c634eea9978712149048 biopython-1.41.ebuild 848
+SHA256 ef21c75a19531535af6b98a01a0c308b966d61781e98566216e0132c87d3ba1d biopython-1.41.ebuild 848
+MISC ChangeLog 3081 RMD160 e261aaf0e878fac46bafee3b32ce7105f9e730de SHA1 4fd38055ca38eb6e7c48a61e48c37e299db5ef87 SHA256 296fdb5614d8124bf67b65d520e617b0b8a66b053b49168bcd901219fcb08c4e
+MD5 4a2e7e473c7ff9107de6dd96e00443d4 ChangeLog 3081
+RMD160 e261aaf0e878fac46bafee3b32ce7105f9e730de ChangeLog 3081
+SHA256 296fdb5614d8124bf67b65d520e617b0b8a66b053b49168bcd901219fcb08c4e ChangeLog 3081
+MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
+MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
+RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
+SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
 MD5 d246b958fac8cca5b9ea50119eedbc50 files/digest-biopython-1.40b 68
+RMD160 9970cbebd48125e743433adfb99e522787529673 files/digest-biopython-1.40b 68
+SHA256 14af6ac9af1b7eba7436972f4ebbfba7b189c42101b7519bc9f8b36253144e11 files/digest-biopython-1.40b 68
 MD5 93cd219847a378a0505a2ea5cb150d3b files/digest-biopython-1.41 67
-MD5 8c623e53daafa025137077c6b65815bd metadata.xml 156
+RMD160 4b44bf6811065afcd9089ae10943b640ab134b25 files/digest-biopython-1.41 67
+SHA256 3bf80f3e8a6c696c6f4b98c28ed921a1096f14247017f99739dc53bd4331a2fb files/digest-biopython-1.41 67
diff --git a/sci-biology/bioruby/Manifest b/sci-biology/bioruby/Manifest
index a3d29c4c2fb2..d067eee38d66 100644
--- a/sci-biology/bioruby/Manifest
+++ b/sci-biology/bioruby/Manifest
@@ -1,8 +1,32 @@
-MD5 38a13b4975170567c9d3d2d3a362d344 ChangeLog 776
+DIST bioruby-0.6.2.tar.gz 270444
+DIST bioruby-0.6.4.tar.gz 307949
+DIST bioruby-0.7.1.tar.gz 485487
+EBUILD bioruby-0.6.2.ebuild 463 RMD160 cf41f891872f7012702f4e8469c688f9407c0fbb SHA1 123cc1fda267f2fce421b7f6bb3a68916e77a7e9 SHA256 d85b35327707176b2f54982a4eadece706c7145b0cb628bc216124c7769ab3e6
 MD5 b6aa80d6b32a6eed86464a3e90bafc5d bioruby-0.6.2.ebuild 463
+RMD160 cf41f891872f7012702f4e8469c688f9407c0fbb bioruby-0.6.2.ebuild 463
+SHA256 d85b35327707176b2f54982a4eadece706c7145b0cb628bc216124c7769ab3e6 bioruby-0.6.2.ebuild 463
+EBUILD bioruby-0.6.4.ebuild 463 RMD160 b8ed83ef4f42436df220cfd50a56c5bd5d1b2952 SHA1 5ab9afe5b7fbdd31226a4666aeeeb3243cb7ef79 SHA256 56ba92f57773ff68a1a2b9e13ad68b6c2b39d63edadffd9f7258c6a3c1c4cd84
 MD5 ceb0fc4499a0a2d1a9cac6dff403b746 bioruby-0.6.4.ebuild 463
+RMD160 b8ed83ef4f42436df220cfd50a56c5bd5d1b2952 bioruby-0.6.4.ebuild 463
+SHA256 56ba92f57773ff68a1a2b9e13ad68b6c2b39d63edadffd9f7258c6a3c1c4cd84 bioruby-0.6.4.ebuild 463
+EBUILD bioruby-0.7.1.ebuild 463 RMD160 44ba482cf8815b2b2a863a3286e3e6bd8525c800 SHA1 2ef1146abeec4dcdf207ad95a7969a85af702b62 SHA256 465585eedcb3f3005106546b5337abfd9a59f04743c286dcce371669c5017b89
 MD5 f8971dd0a8fca9615abd0273b390efc5 bioruby-0.7.1.ebuild 463
+RMD160 44ba482cf8815b2b2a863a3286e3e6bd8525c800 bioruby-0.7.1.ebuild 463
+SHA256 465585eedcb3f3005106546b5337abfd9a59f04743c286dcce371669c5017b89 bioruby-0.7.1.ebuild 463
+MISC ChangeLog 776 RMD160 f4bb4aa31bba796061a1bee775e3c3939306e68b SHA1 15f896d1d2c72798049769d46cf893f2e123f8ee SHA256 79399eb68b20652ad799cbf4459fa671fe0b41498a586e92268e0f56085cc171
+MD5 38a13b4975170567c9d3d2d3a362d344 ChangeLog 776
+RMD160 f4bb4aa31bba796061a1bee775e3c3939306e68b ChangeLog 776
+SHA256 79399eb68b20652ad799cbf4459fa671fe0b41498a586e92268e0f56085cc171 ChangeLog 776
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 bbb30d670eb6cbd584d1af2ca4066878 files/digest-bioruby-0.6.2 65
+RMD160 a4c80805ff7384806c7dcb6f0003d581cfafd689 files/digest-bioruby-0.6.2 65
+SHA256 b8571d7fa86586025516d56c85074a6c44a77f4eda630c34ac6c498f38ba2287 files/digest-bioruby-0.6.2 65
 MD5 550626f843c53e2f3464451389598c45 files/digest-bioruby-0.6.4 65
+RMD160 d0b206563147148dc14436736a5c936860f47435 files/digest-bioruby-0.6.4 65
+SHA256 6e7115d13afe5a9115f12075438830df3ce98133684dcdbfca93d4518f2504d2 files/digest-bioruby-0.6.4 65
 MD5 618574f81cc38164128b56de2716e26d files/digest-bioruby-0.7.1 65
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 3c726d055f1f452571d26933adcc4cdb6242e79f files/digest-bioruby-0.7.1 65
+SHA256 047cf1f39c9e99e1f5cad027e57c75e9695ee0d5fa115c270e59adab2245f5a7 files/digest-bioruby-0.7.1 65
diff --git a/sci-biology/cbcanalyzer/Manifest b/sci-biology/cbcanalyzer/Manifest
index f8ed50d1dd30..48995c724e13 100644
--- a/sci-biology/cbcanalyzer/Manifest
+++ b/sci-biology/cbcanalyzer/Manifest
@@ -1,34 +1,24 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
-DIST cbcanalyzer-1.0.0.tar.gz 1729756 size 1729756
-DIST cbcanalyzer-1.0.2.tar.gz 1737660 size 1737660
-EBUILD cbcanalyzer-1.0.0.ebuild 880 RMD160 5057d55a9230082b32c5cd0b34d3c6b8a4c8d855 SHA1 3769a0d24fbfb68247cc5cb788394c55ee800169 SHA256 d7d8e92dfb08bed8fe7d8e0213a59eb875cdca2daa06df666600caa68903206c size 880
+DIST cbcanalyzer-1.0.0.tar.gz 1729756
+DIST cbcanalyzer-1.0.2.tar.gz 1737660
+EBUILD cbcanalyzer-1.0.0.ebuild 880 RMD160 5057d55a9230082b32c5cd0b34d3c6b8a4c8d855 SHA1 3769a0d24fbfb68247cc5cb788394c55ee800169 SHA256 d7d8e92dfb08bed8fe7d8e0213a59eb875cdca2daa06df666600caa68903206c
 MD5 b2707fec7fb6f02210820b71a7ca6bc0 cbcanalyzer-1.0.0.ebuild 880
 RMD160 5057d55a9230082b32c5cd0b34d3c6b8a4c8d855 cbcanalyzer-1.0.0.ebuild 880
 SHA256 d7d8e92dfb08bed8fe7d8e0213a59eb875cdca2daa06df666600caa68903206c cbcanalyzer-1.0.0.ebuild 880
-EBUILD cbcanalyzer-1.0.2.ebuild 882 RMD160 b3dd16626f8bb1ead7f9cbb1040fb19316b50393 SHA1 2b10d57b1baf90b535d3778bae03ea685a02187b SHA256 206da3c15e0728e664f199e37bc7f3bd665a8e265d0c36fc1476dcd81977f820 size 882
+EBUILD cbcanalyzer-1.0.2.ebuild 882 RMD160 b3dd16626f8bb1ead7f9cbb1040fb19316b50393 SHA1 2b10d57b1baf90b535d3778bae03ea685a02187b SHA256 206da3c15e0728e664f199e37bc7f3bd665a8e265d0c36fc1476dcd81977f820
 MD5 e675e183246a2227a0f7265c1b7c7771 cbcanalyzer-1.0.2.ebuild 882
 RMD160 b3dd16626f8bb1ead7f9cbb1040fb19316b50393 cbcanalyzer-1.0.2.ebuild 882
 SHA256 206da3c15e0728e664f199e37bc7f3bd665a8e265d0c36fc1476dcd81977f820 cbcanalyzer-1.0.2.ebuild 882
-MISC ChangeLog 766 RMD160 62f30d4784b881f0b15cf93642d931baffb91f81 SHA1 a91e2c08530dd78ac7bf34fcce8ffb230f934dc8 SHA256 95905d7811c8321f0de6bfbdd8c6d981dc3ac0fd8e316e57a3360c2d99fb07bf size 766
+MISC ChangeLog 766 RMD160 62f30d4784b881f0b15cf93642d931baffb91f81 SHA1 a91e2c08530dd78ac7bf34fcce8ffb230f934dc8 SHA256 95905d7811c8321f0de6bfbdd8c6d981dc3ac0fd8e316e57a3360c2d99fb07bf
 MD5 ca86d7602abc53c0510c68fcfa6fe0e8 ChangeLog 766
 RMD160 62f30d4784b881f0b15cf93642d931baffb91f81 ChangeLog 766
 SHA256 95905d7811c8321f0de6bfbdd8c6d981dc3ac0fd8e316e57a3360c2d99fb07bf ChangeLog 766
-MISC metadata.xml 1517 RMD160 0e84b3b543f9d7ea9d0a0fe319edaff4fd5f71ac SHA1 1aacbdf90b90a5cde87e82b260acfc4596f47a93 SHA256 1ef47cb40e6bc28565887588c602f868a0c3b39ddf4c91336bc1bc4d862b93a4 size 1517
-MD5 1a5c9d38a76d4e5a2581eceff4400697 metadata.xml 1517
-RMD160 0e84b3b543f9d7ea9d0a0fe319edaff4fd5f71ac metadata.xml 1517
-SHA256 1ef47cb40e6bc28565887588c602f868a0c3b39ddf4c91336bc1bc4d862b93a4 metadata.xml 1517
+MISC metadata.xml 1525 RMD160 bfe724d402979a39e8843a9d48c9eca1d577e5fe SHA1 867024d583fe01e9dba5edef716a248103204002 SHA256 ea33690a6c0e163a489b0e168d0aebe94930897c392c750b5e906d9c551b5d83
+MD5 e720abed57e2a1a5d8ae0b7bf7151d01 metadata.xml 1525
+RMD160 bfe724d402979a39e8843a9d48c9eca1d577e5fe metadata.xml 1525
+SHA256 ea33690a6c0e163a489b0e168d0aebe94930897c392c750b5e906d9c551b5d83 metadata.xml 1525
 MD5 f69a329aa4d9ac75cae676a247c6fa52 files/digest-cbcanalyzer-1.0.0 70
 RMD160 049cd1b290701533f86f5b291ea57c52c54975e4 files/digest-cbcanalyzer-1.0.0 70
 SHA256 acd0ba8158d77b91da8e7cc99d1b9c454c77dd899689ae7f37f7fa216a00cab6 files/digest-cbcanalyzer-1.0.0 70
 MD5 42785cbb5761aa74eb0f4721aaf83aa3 files/digest-cbcanalyzer-1.0.2 70
 RMD160 65b76dfb7ed0975a1fbb150554de3de612534e9f files/digest-cbcanalyzer-1.0.2 70
 SHA256 735718722115d632028edf74425c1f85f32542056ac91b76352a917417ab4af7 files/digest-cbcanalyzer-1.0.2 70
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.2.2 (GNU/Linux)
-
-iD8DBQFEXH3GV3J2n04EauwRAldDAJsFnU1ld63xnfKCW2l4wu40zldXswCglmZn
-r/Wrl08kprJQyr31GiIHdao=
-=mUuH
------END PGP SIGNATURE-----
diff --git a/sci-biology/clustalw-mpi/Manifest b/sci-biology/clustalw-mpi/Manifest
index 79d910d5da5f..b1c51cc394ae 100644
--- a/sci-biology/clustalw-mpi/Manifest
+++ b/sci-biology/clustalw-mpi/Manifest
@@ -1,4 +1,16 @@
-MD5 3ea9eaf8da5b83cd345fa860eb640205 ChangeLog 603
+DIST clustalw-mpi-0.13.tar.gz 154911
+EBUILD clustalw-mpi-0.13.ebuild 1211 RMD160 c0fd836e0f7a6a12577eeebe043cf4190ff75d2e SHA1 bb442f1adc58588e6e7df8f2efec14adf3d3e394 SHA256 d3ed9f93fff4fbd977308855a87c8171473ddf44c2f794e2c95966f6d1397c66
 MD5 2e33001f325f033172683f9aa5939b87 clustalw-mpi-0.13.ebuild 1211
+RMD160 c0fd836e0f7a6a12577eeebe043cf4190ff75d2e clustalw-mpi-0.13.ebuild 1211
+SHA256 d3ed9f93fff4fbd977308855a87c8171473ddf44c2f794e2c95966f6d1397c66 clustalw-mpi-0.13.ebuild 1211
+MISC ChangeLog 603 RMD160 65d3b3d10d68ed5cef90add5f2719a465e0515e2 SHA1 8d4e0cd49968a2859d0640f54d1b5a3094e62b93 SHA256 3d3d8daa7506d1930097527bed1a64a34963d60dbb631e3758557ae9b204699d
+MD5 3ea9eaf8da5b83cd345fa860eb640205 ChangeLog 603
+RMD160 65d3b3d10d68ed5cef90add5f2719a465e0515e2 ChangeLog 603
+SHA256 3d3d8daa7506d1930097527bed1a64a34963d60dbb631e3758557ae9b204699d ChangeLog 603
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 a3271acbd5ef3270f2823a55c22dc7cc files/digest-clustalw-mpi-0.13 69
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 4403f323201a1654f0409402769ae61a27dc5bbf files/digest-clustalw-mpi-0.13 69
+SHA256 573e9723d88db4015ee2b80efdd9bde357a782c76dff25d0131beb3c89460721 files/digest-clustalw-mpi-0.13 69
diff --git a/sci-biology/clustalw/Manifest b/sci-biology/clustalw/Manifest
index e7829cdccd41..2529a4364f13 100644
--- a/sci-biology/clustalw/Manifest
+++ b/sci-biology/clustalw/Manifest
@@ -1,4 +1,16 @@
-MD5 7526d881251f78d06700dfa40609aeab ChangeLog 2265
+DIST clustalw1.83.UNIX.tar.gz 166863
+EBUILD clustalw-1.83-r1.ebuild 1041 RMD160 36949e134d0e8f6be793f1e0fb45ad5a0b85eef6 SHA1 64fa91bd9c431c02c4d72e407374259dd3e62b0b SHA256 785dba96387255a9e5c45913ead2c22b09f3002c5ab3da68c04e9f13a1a178ae
 MD5 1ef7500538aba0d3b9633c91ff6f25f8 clustalw-1.83-r1.ebuild 1041
+RMD160 36949e134d0e8f6be793f1e0fb45ad5a0b85eef6 clustalw-1.83-r1.ebuild 1041
+SHA256 785dba96387255a9e5c45913ead2c22b09f3002c5ab3da68c04e9f13a1a178ae clustalw-1.83-r1.ebuild 1041
+MISC ChangeLog 2265 RMD160 fbc5888edcce3cf5c412809d10450cba7903c237 SHA1 dc11adcd959c18ad6d2a6c327e494d6c6a78eb0f SHA256 35d42bff52a9676f91236355ede7368903d5c9c44e3a16d54ea6d316bd87e455
+MD5 7526d881251f78d06700dfa40609aeab ChangeLog 2265
+RMD160 fbc5888edcce3cf5c412809d10450cba7903c237 ChangeLog 2265
+SHA256 35d42bff52a9676f91236355ede7368903d5c9c44e3a16d54ea6d316bd87e455 ChangeLog 2265
+MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
+MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
+RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
+SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
 MD5 59931bb873b284e7ab0b7c452e87d075 files/digest-clustalw-1.83-r1 69
-MD5 8c623e53daafa025137077c6b65815bd metadata.xml 156
+RMD160 b50134dcd2849fa153800fb08e1daeed2a8404ba files/digest-clustalw-1.83-r1 69
+SHA256 a8fc4a0bcfad5807cbd8e72fa4e4e9d8d87829a39a94bd9337f1ae879985fa89 files/digest-clustalw-1.83-r1 69
diff --git a/sci-biology/clustalx/Manifest b/sci-biology/clustalx/Manifest
index a7865485fe44..6dd37931c4e7 100644
--- a/sci-biology/clustalx/Manifest
+++ b/sci-biology/clustalx/Manifest
@@ -1,12 +1,16 @@
-MD5 ac653f038113e36f51ee40e77b88393b ChangeLog 2199
-RMD160 9e52c4d5055e6dec47684a5dce7bba29ed670b3c ChangeLog 2199
-SHA256 7f99d88df2ea1a3ec48e1baf341e3a874bfba1699c0fba6aa01ce8d36034830a ChangeLog 2199
+DIST clustalx1.83.sun.tar.gz 860205
+EBUILD clustalx-1.83-r2.ebuild 1811 RMD160 4e0b8cc235ee97970db188feaf7482c0f6754234 SHA1 484d4426b0d66a36b7aabcc31fd79a414387e9f9 SHA256 01e47f0d0f8790b9960f356d66552d0db0f7347cbdb2ccb0b8af887736cb2172
 MD5 432fb97fddf4a98d7af719d88af5ee97 clustalx-1.83-r2.ebuild 1811
 RMD160 4e0b8cc235ee97970db188feaf7482c0f6754234 clustalx-1.83-r2.ebuild 1811
 SHA256 01e47f0d0f8790b9960f356d66552d0db0f7347cbdb2ccb0b8af887736cb2172 clustalx-1.83-r2.ebuild 1811
+MISC ChangeLog 2199 RMD160 9e52c4d5055e6dec47684a5dce7bba29ed670b3c SHA1 73a3abeb05a634fd5b171a5a1340daf13f293bdd SHA256 7f99d88df2ea1a3ec48e1baf341e3a874bfba1699c0fba6aa01ce8d36034830a
+MD5 ac653f038113e36f51ee40e77b88393b ChangeLog 2199
+RMD160 9e52c4d5055e6dec47684a5dce7bba29ed670b3c ChangeLog 2199
+SHA256 7f99d88df2ea1a3ec48e1baf341e3a874bfba1699c0fba6aa01ce8d36034830a ChangeLog 2199
+MISC metadata.xml 517 RMD160 cbef0914ee9e8ad6d3b02327869c8a337a29c7c9 SHA1 2b9b6c303802362af03c563c31f8a6f30accb15c SHA256 6696a58fe9064e27540e9d4bf0799a6ff7edf64ab01e988e277c73c74438c044
+MD5 2e31a0b758e19425a055928c992d448a metadata.xml 517
+RMD160 cbef0914ee9e8ad6d3b02327869c8a337a29c7c9 metadata.xml 517
+SHA256 6696a58fe9064e27540e9d4bf0799a6ff7edf64ab01e988e277c73c74438c044 metadata.xml 517
 MD5 800c4da737d4fb9af3d8ffb7f6f44892 files/digest-clustalx-1.83-r2 68
 RMD160 65c6bfb6865cb3a790c0466dd594284b8976747b files/digest-clustalx-1.83-r2 68
 SHA256 e64e9220cac76c247d185b90b3d417d4e6aeaeb83d717f02c8a7bbc43e969e8d files/digest-clustalx-1.83-r2 68
-MD5 272b5b012593acd07a7a60b8b64e6761 metadata.xml 509
-RMD160 8155edab5beffeda8d6df320573352ea504a89bf metadata.xml 509
-SHA256 93b284c12f6e617dfd733e267fe79d561336958c4ad9b9e5c3dfb88eb01f6583 metadata.xml 509
diff --git a/sci-biology/cutg/Manifest b/sci-biology/cutg/Manifest
index 63485cc6733f..f1d6e0856c71 100644
--- a/sci-biology/cutg/Manifest
+++ b/sci-biology/cutg/Manifest
@@ -22,10 +22,10 @@ MISC ChangeLog 5382 RMD160 01061dc7460cf8fc732b9ddd7a3646c27f939fed SHA1 cee10ea
 MD5 fbb3b677acad87b6a2ad2d964803d4cd ChangeLog 5382
 RMD160 01061dc7460cf8fc732b9ddd7a3646c27f939fed ChangeLog 5382
 SHA256 fd1655d0c86a53d0f8cf9efe200b1cf6a46c17c2e75abf7c72f409a143b75ef3 ChangeLog 5382
-MISC metadata.xml 594 RMD160 2458f9e63bfdb7f5600d072a276719b0758b560d SHA1 25f2384069c1110c9c9852eae7f773d37f23df1d SHA256 d64f4ad5e9786d8466bd63532befc20cd8bd0a24c386695181e1124548f09717
-MD5 d14f29edef39d8d89b39a5787c3d141c metadata.xml 594
-RMD160 2458f9e63bfdb7f5600d072a276719b0758b560d metadata.xml 594
-SHA256 d64f4ad5e9786d8466bd63532befc20cd8bd0a24c386695181e1124548f09717 metadata.xml 594
+MISC metadata.xml 602 RMD160 0bfaf291f7a1ef2d7c7c3c56b307faeb2d73a14a SHA1 029a446c9375b8a243aa2ef848a6d73144495d81 SHA256 99510df8b62ab52d5ad0a72077f01df7e0e9ccaf374a3456e4a39fb9821aa46a
+MD5 35b8093f40dbeaa81ac2e1da6fb9c7a9 metadata.xml 602
+RMD160 0bfaf291f7a1ef2d7c7c3c56b307faeb2d73a14a metadata.xml 602
+SHA256 99510df8b62ab52d5ad0a72077f01df7e0e9ccaf374a3456e4a39fb9821aa46a metadata.xml 602
 MD5 8fe4ad8cd05d6466bcf6c253c5a18ba4 files/digest-cutg-148 63
 RMD160 ebcd898db2a16105c83364922cf4d9c9c87e4188 files/digest-cutg-148 63
 SHA256 db5c885fe2d472f2c28c3e44d257622355d5d133aeb79a8e8a73d188f5151b18 files/digest-cutg-148 63
diff --git a/sci-biology/dialign-t/Manifest b/sci-biology/dialign-t/Manifest
index af8e120b76c1..09791619ed6b 100644
--- a/sci-biology/dialign-t/Manifest
+++ b/sci-biology/dialign-t/Manifest
@@ -7,10 +7,10 @@ MISC ChangeLog 646 RMD160 843f93626a7f00f631691dc1542a3a0a6e61e5c2 SHA1 103bc7a7
 MD5 4f0d3af1e30d0076ed8bfa069e12ea51 ChangeLog 646
 RMD160 843f93626a7f00f631691dc1542a3a0a6e61e5c2 ChangeLog 646
 SHA256 cb8501fd56a962d0d1d931b662f29ab1e446bdc223393278dac05d862bed7740 ChangeLog 646
-MISC metadata.xml 248 RMD160 2a9b569fa64bc3db0e1164e89b612d23e99b8a96 SHA1 54746d4fbc728176fc1ffa9d38d34449dbe191f4 SHA256 803c22736a7dd04ff00470d60e120801a4b00821e734d790270eb9d46803ea86
-MD5 9b7f6ded82afdd3e3470083654f49745 metadata.xml 248
-RMD160 2a9b569fa64bc3db0e1164e89b612d23e99b8a96 metadata.xml 248
-SHA256 803c22736a7dd04ff00470d60e120801a4b00821e734d790270eb9d46803ea86 metadata.xml 248
+MISC metadata.xml 256 RMD160 7d3c707d8af4ab77e85a50612373e3e55c1bba9d SHA1 df9a21f9818659e6a14af34e15128b1683b8ccb7 SHA256 25e19d829dce6b1dc9988bf781c16099deba0d99c6e316a07f852c01fbd07af6
+MD5 de1e476ee40ca1aa1c0b268af045afde metadata.xml 256
+RMD160 7d3c707d8af4ab77e85a50612373e3e55c1bba9d metadata.xml 256
+SHA256 25e19d829dce6b1dc9988bf781c16099deba0d99c6e316a07f852c01fbd07af6 metadata.xml 256
 MD5 20a9e61f87048ee301d0cb690b890ede files/digest-dialign-t-0.2.1 250
 RMD160 9d920eafc14c5c82bb7f59a0589570c52ce5e292 files/digest-dialign-t-0.2.1 250
 SHA256 13b80f9063a8294da8e20803cd0ab7ac56a38eb1ba5548885f52000103db8795 files/digest-dialign-t-0.2.1 250
diff --git a/sci-biology/ecell/Manifest b/sci-biology/ecell/Manifest
index 9c44106659d2..30fdef298681 100644
--- a/sci-biology/ecell/Manifest
+++ b/sci-biology/ecell/Manifest
@@ -1,16 +1,23 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
-MD5 c5891d02599802a324b2f89bd0fdca5d ecell-3.1.102.ebuild 776
+DIST ecell-3.1.102.tar.gz 3204291
+EBUILD ecell-3.1.102-r1.ebuild 1059 RMD160 9d9189c4f447610b146424b687fb4e77cac3780f SHA1 bf64555d707c6e77db0f6a98a1653cf54cb5f36e SHA256 0e10185ca0229056013f89be7f26c6c38ed497072e417e340358c1c418ec5c4e
 MD5 05f5746322c9f3abfd0dd04c0228f465 ecell-3.1.102-r1.ebuild 1059
+RMD160 9d9189c4f447610b146424b687fb4e77cac3780f ecell-3.1.102-r1.ebuild 1059
+SHA256 0e10185ca0229056013f89be7f26c6c38ed497072e417e340358c1c418ec5c4e ecell-3.1.102-r1.ebuild 1059
+EBUILD ecell-3.1.102.ebuild 776 RMD160 a0ecddfd95d3b439764f97b2ca0a912ec4afe800 SHA1 b9bffff1c381b66ae9bc855d8b2ff4f2e714cdb4 SHA256 aa1e29ee46807d870806a7a99a871ee7f63a80043703433614d91629dec7aa60
+MD5 c5891d02599802a324b2f89bd0fdca5d ecell-3.1.102.ebuild 776
+RMD160 a0ecddfd95d3b439764f97b2ca0a912ec4afe800 ecell-3.1.102.ebuild 776
+SHA256 aa1e29ee46807d870806a7a99a871ee7f63a80043703433614d91629dec7aa60 ecell-3.1.102.ebuild 776
+MISC ChangeLog 1263 RMD160 3813849f0f4928dec94013c04c996b02ef589bd8 SHA1 2f110ac63cccdd5fafe6809d4ef45ebc60fa1edd SHA256 f7b81bf9ca2e362a6a3e36a2385c6c1afaf8ddcf4d9682eb27de1bba693b33a6
 MD5 5cc9cf38052ab80c509ad16c9e118ea3 ChangeLog 1263
-MD5 155da428f344189ed3afe853bdd0a233 metadata.xml 354
-MD5 8f591a6f5e0c8c4c1389b02612d7c6df files/digest-ecell-3.1.102-r1 66
+RMD160 3813849f0f4928dec94013c04c996b02ef589bd8 ChangeLog 1263
+SHA256 f7b81bf9ca2e362a6a3e36a2385c6c1afaf8ddcf4d9682eb27de1bba693b33a6 ChangeLog 1263
+MISC metadata.xml 362 RMD160 d2fdeef9de9cc0bb0cc6aa9c82537ee367043d5c SHA1 e62eb1133e6d7e5d870348322d4cbf0f6f5b4c78 SHA256 4bb371896e2af5622b8c0e9f09abfdaeec33078aceccb6c13cab2af13bb4dc5d
+MD5 f0a542035efaf6f7c50fcad6fe790566 metadata.xml 362
+RMD160 d2fdeef9de9cc0bb0cc6aa9c82537ee367043d5c metadata.xml 362
+SHA256 4bb371896e2af5622b8c0e9f09abfdaeec33078aceccb6c13cab2af13bb4dc5d metadata.xml 362
 MD5 8f591a6f5e0c8c4c1389b02612d7c6df files/digest-ecell-3.1.102 66
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.9.10 (GNU/Linux)
-
-iD8DBQFB2GVQI1lqEGTUzyQRAoRtAKCdH1V3g4ak8FFAqAnhDtyb4ZpLfQCfQA44
-QAeuIRnFyLkok9aZiwx8+Lc=
-=nR9e
------END PGP SIGNATURE-----
+RMD160 bb091fb3dd2bcdf7aee7b7d873e359cd2efff4f2 files/digest-ecell-3.1.102 66
+SHA256 f15d9f27df842018d842ee205e86ec63b1d950822e6e28bf9b2594ef9d333282 files/digest-ecell-3.1.102 66
+MD5 8f591a6f5e0c8c4c1389b02612d7c6df files/digest-ecell-3.1.102-r1 66
+RMD160 bb091fb3dd2bcdf7aee7b7d873e359cd2efff4f2 files/digest-ecell-3.1.102-r1 66
+SHA256 f15d9f27df842018d842ee205e86ec63b1d950822e6e28bf9b2594ef9d333282 files/digest-ecell-3.1.102-r1 66
diff --git a/sci-biology/elph/Manifest b/sci-biology/elph/Manifest
index 40a31bde021d..9ab453c4d199 100644
--- a/sci-biology/elph/Manifest
+++ b/sci-biology/elph/Manifest
@@ -1,6 +1,24 @@
-MD5 3f29ac92714c7c9d82ef996aa81e9cfe elph-0.1.5.ebuild 1097
-MD5 26a11c41ea9a73b758ff441694312bce ChangeLog 1571
-MD5 13040a191bb49af836a11a1727f7841c metadata.xml 610
+AUX elph-0.1.4-usage.patch 3909 RMD160 dd9e29881937b1be29c851270056ee455b1ec6e3 SHA1 42b64abe718ed2702513cd2c43083e1bfeb6d6b6 SHA256 89ed340310bb46f6d92d7f644b515e4b919dbf411a039a225e04387055b47482
 MD5 75fe098a9b1df66ed55f16b4cfde3922 files/elph-0.1.4-usage.patch 3909
+RMD160 dd9e29881937b1be29c851270056ee455b1ec6e3 files/elph-0.1.4-usage.patch 3909
+SHA256 89ed340310bb46f6d92d7f644b515e4b919dbf411a039a225e04387055b47482 files/elph-0.1.4-usage.patch 3909
+AUX elph-0.1.5-usage.patch 3913 RMD160 31964a1d76753d2167c5e206d34648088e974f34 SHA1 43dec8645c461c8cf1557c66f1b3bcb1daa28eb7 SHA256 78ee515e8a0ab04b279cb638c459fe1152b5f0015c9d5c9feea4f3d2a00d226a
 MD5 fdc58c9dcd2752ace3fb6520676c8414 files/elph-0.1.5-usage.patch 3913
+RMD160 31964a1d76753d2167c5e206d34648088e974f34 files/elph-0.1.5-usage.patch 3913
+SHA256 78ee515e8a0ab04b279cb638c459fe1152b5f0015c9d5c9feea4f3d2a00d226a files/elph-0.1.5-usage.patch 3913
+DIST ELPH-0.1.5.tar.gz 153150
+EBUILD elph-0.1.5.ebuild 1097 RMD160 d8f66d9a632a7ed9956725a8dc652eb81d3ac9b2 SHA1 da4ce2c28e4ad6866ad14dda00514679b4b98e3a SHA256 63ebe16b7a570eefd797e3c975abda63cf58e5c82af00f22c8896a119aa6b837
+MD5 3f29ac92714c7c9d82ef996aa81e9cfe elph-0.1.5.ebuild 1097
+RMD160 d8f66d9a632a7ed9956725a8dc652eb81d3ac9b2 elph-0.1.5.ebuild 1097
+SHA256 63ebe16b7a570eefd797e3c975abda63cf58e5c82af00f22c8896a119aa6b837 elph-0.1.5.ebuild 1097
+MISC ChangeLog 1571 RMD160 ed19661c627baa83c9d453ea5487dc4d0168f930 SHA1 78b3d5a79975fc2a5faea1b79b626d9646060e68 SHA256 dfd4ee53b8f0046eeaa753aad7293a301167684f545c4c4e222f138fe07cf5da
+MD5 26a11c41ea9a73b758ff441694312bce ChangeLog 1571
+RMD160 ed19661c627baa83c9d453ea5487dc4d0168f930 ChangeLog 1571
+SHA256 dfd4ee53b8f0046eeaa753aad7293a301167684f545c4c4e222f138fe07cf5da ChangeLog 1571
+MISC metadata.xml 618 RMD160 c12c3b203d43e98a9d5d14f30d3dce94c2e333d3 SHA1 f58d78e1345fbe6ef942856012e001caa7763e0d SHA256 7082144df779385cb3306d99cb673d671c4797c63cd7c02954ce6c1eef59e1b8
+MD5 e8ae74a2d1c9e4805037b29a61412081 metadata.xml 618
+RMD160 c12c3b203d43e98a9d5d14f30d3dce94c2e333d3 metadata.xml 618
+SHA256 7082144df779385cb3306d99cb673d671c4797c63cd7c02954ce6c1eef59e1b8 metadata.xml 618
 MD5 edfbe76f341ee7fc8c683b7fe0b023bd files/digest-elph-0.1.5 62
+RMD160 68bce06334b9e5c1c7092625b8b9843c055602e6 files/digest-elph-0.1.5 62
+SHA256 40f369d3feec46b4164485bed19a41380a1949cb8e7e325761897669b20988d7 files/digest-elph-0.1.5 62
diff --git a/sci-biology/embassy-domainatrix/Manifest b/sci-biology/embassy-domainatrix/Manifest
index 7aacf45cd2d3..1476d9e841c2 100644
--- a/sci-biology/embassy-domainatrix/Manifest
+++ b/sci-biology/embassy-domainatrix/Manifest
@@ -1,4 +1,17 @@
+DIST DOMAINATRIX-0.1.0.tar.gz 349882
+DIST EMBOSS-3.0.0.tar.gz 16257908
+EBUILD embassy-domainatrix-0.1.0.ebuild 374 RMD160 22ce70abc5a4b90ceceb7efe6595f3b234266826 SHA1 04eab5b8c69612e103fc91ea4a88c663d50a8cf9 SHA256 804fd4523439c6b39db5761f3b06599a2461ff5c58be1289ccdb253360fac732
 MD5 2fe8aa9103374cce534c26ea247af850 embassy-domainatrix-0.1.0.ebuild 374
+RMD160 22ce70abc5a4b90ceceb7efe6595f3b234266826 embassy-domainatrix-0.1.0.ebuild 374
+SHA256 804fd4523439c6b39db5761f3b06599a2461ff5c58be1289ccdb253360fac732 embassy-domainatrix-0.1.0.ebuild 374
+MISC ChangeLog 2649 RMD160 75d70ed28b99b27d08bd00d6041cdbad78d21b2c SHA1 bff0148ce2fb65140aacba2c7015cb8cd7a97ee8 SHA256 c220f57d6d5c9345b819365ae46e9cae9ccb8a02c71bba77e3c4c866cf4b52d7
 MD5 553e3ccfca3938be31529371521e4192 ChangeLog 2649
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 75d70ed28b99b27d08bd00d6041cdbad78d21b2c ChangeLog 2649
+SHA256 c220f57d6d5c9345b819365ae46e9cae9ccb8a02c71bba77e3c4c866cf4b52d7 ChangeLog 2649
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 a420f0da5977f136b3bc1a5832ae1d59 files/digest-embassy-domainatrix-0.1.0 135
+RMD160 99b67a7279121259d7e23308db11add3bc683852 files/digest-embassy-domainatrix-0.1.0 135
+SHA256 a85a4856a201ad44f868a0c1c112bb20462ae8886e7d994b9186cd7dc839098b files/digest-embassy-domainatrix-0.1.0 135
diff --git a/sci-biology/embassy-domalign/Manifest b/sci-biology/embassy-domalign/Manifest
index b3a46224a5ae..cb17dd4ad7fb 100644
--- a/sci-biology/embassy-domalign/Manifest
+++ b/sci-biology/embassy-domalign/Manifest
@@ -1,4 +1,17 @@
-MD5 6f812b5369ac94018dd0ce451fae4c29 ChangeLog 772
+DIST DOMALIGN-0.1.0.tar.gz 347672
+DIST EMBOSS-3.0.0.tar.gz 16257908
+EBUILD embassy-domalign-0.1.0.ebuild 369 RMD160 8853dcd85e5f6b4845e93d183ae0f4b24a54c2c1 SHA1 1ffc3bfbe2bb455659d61a2c085fa55e6276b7ab SHA256 70469ecb1c32a0f6d333719fdafc7b83431ad1db92efbe49703e48759ba9d60a
 MD5 c1c14534b6a8338ae73a889c494d57cb embassy-domalign-0.1.0.ebuild 369
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 8853dcd85e5f6b4845e93d183ae0f4b24a54c2c1 embassy-domalign-0.1.0.ebuild 369
+SHA256 70469ecb1c32a0f6d333719fdafc7b83431ad1db92efbe49703e48759ba9d60a embassy-domalign-0.1.0.ebuild 369
+MISC ChangeLog 772 RMD160 331238c38aff32b8fde8bdc7982425e821a441e9 SHA1 6d5a79b34ff40579a4b6fa25b396cc6dd5ed4f0e SHA256 2b428742bff74228c3de4887aa9607fee8414318e99caa554e03014f4c58bcc8
+MD5 6f812b5369ac94018dd0ce451fae4c29 ChangeLog 772
+RMD160 331238c38aff32b8fde8bdc7982425e821a441e9 ChangeLog 772
+SHA256 2b428742bff74228c3de4887aa9607fee8414318e99caa554e03014f4c58bcc8 ChangeLog 772
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 0cafd54298b652bfe7330369f78aef31 files/digest-embassy-domalign-0.1.0 132
+RMD160 a4af3684c0d73405d741f4c283d704d4db5df104 files/digest-embassy-domalign-0.1.0 132
+SHA256 aca3afb98a14b64857a2dc7222fa320827759e5a5c335b0d9c1d6c29ffb2bf5c files/digest-embassy-domalign-0.1.0 132
diff --git a/sci-biology/embassy-domsearch/Manifest b/sci-biology/embassy-domsearch/Manifest
index 1e2ceb1d6bda..7ce21e80e888 100644
--- a/sci-biology/embassy-domsearch/Manifest
+++ b/sci-biology/embassy-domsearch/Manifest
@@ -1,4 +1,17 @@
+DIST DOMSEARCH-0.1.0.tar.gz 352793
+DIST EMBOSS-3.0.0.tar.gz 16257908
+EBUILD embassy-domsearch-0.1.0.ebuild 368 RMD160 5c76ed91a7de02aab0d95abfbf97069bca02f275 SHA1 58548917b060d6a007fb17ef9a942b108e156830 SHA256 2131c69a78c0764897750765190e273aa77e7b8309cd3efa13b2903214845f74
 MD5 9a37ff0d548fc62e8da29408a93804ea embassy-domsearch-0.1.0.ebuild 368
+RMD160 5c76ed91a7de02aab0d95abfbf97069bca02f275 embassy-domsearch-0.1.0.ebuild 368
+SHA256 2131c69a78c0764897750765190e273aa77e7b8309cd3efa13b2903214845f74 embassy-domsearch-0.1.0.ebuild 368
+MISC ChangeLog 779 RMD160 4821999129c8d7ce7ee03602201a06da2eba360d SHA1 8d239ad9c249a466a3a6b791a3c999696d6dc094 SHA256 f3279d3774de13cc1697bd480f0e4e7eba7348a20a034eb4bb40d4e0edbceb5e
 MD5 bf68b0ed43c04e3809c5725d8b0a7e33 ChangeLog 779
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 4821999129c8d7ce7ee03602201a06da2eba360d ChangeLog 779
+SHA256 f3279d3774de13cc1697bd480f0e4e7eba7348a20a034eb4bb40d4e0edbceb5e ChangeLog 779
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 b22e3d80514fd4b1e49751746db0d04c files/digest-embassy-domsearch-0.1.0 133
+RMD160 5ba37c66955805042cde3b261b17f02422e7713a files/digest-embassy-domsearch-0.1.0 133
+SHA256 04de850526c207b05ed44a2bd3b1e74517c8179ee13bb183c935b0e970d0de87 files/digest-embassy-domsearch-0.1.0 133
diff --git a/sci-biology/embassy-emnu/Manifest b/sci-biology/embassy-emnu/Manifest
index ab0dc7f4945a..bc282ebcb2f0 100644
--- a/sci-biology/embassy-emnu/Manifest
+++ b/sci-biology/embassy-emnu/Manifest
@@ -1,4 +1,17 @@
+DIST EMBOSS-3.0.0.tar.gz 16257908
+DIST EMNU-1.05.tar.gz 348924
+EBUILD embassy-emnu-1.05-r2.ebuild 472 RMD160 1fcf57c3452ccf3ff4e9442fa48cb8b3c7f2d9f7 SHA1 144fd797af28a3acd98bc65b816d0ebb4126543c SHA256 19ec31dc987087d54df7ffaf4e23559479eeb9f2914117cf9e1f5a0eb52febe7
 MD5 411bca0d1f50cef1475845c17f324d9c embassy-emnu-1.05-r2.ebuild 472
+RMD160 1fcf57c3452ccf3ff4e9442fa48cb8b3c7f2d9f7 embassy-emnu-1.05-r2.ebuild 472
+SHA256 19ec31dc987087d54df7ffaf4e23559479eeb9f2914117cf9e1f5a0eb52febe7 embassy-emnu-1.05-r2.ebuild 472
+MISC ChangeLog 2300 RMD160 3babc5e7cc93df59afff5df6443f7e758f1981fa SHA1 f199b51f792a9670c196e9414b9756c5312d734e SHA256 7d4546f785aa0763d877e088bc060be352208f0f99f86ab0eddd2019077d6241
 MD5 b82bceb390868698c8a16e5f455226e4 ChangeLog 2300
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 3babc5e7cc93df59afff5df6443f7e758f1981fa ChangeLog 2300
+SHA256 7d4546f785aa0763d877e088bc060be352208f0f99f86ab0eddd2019077d6241 ChangeLog 2300
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 ff8b6756718e28addcef915f54046d5f files/digest-embassy-emnu-1.05-r2 127
+RMD160 ba3d328b7fd16556b688ce052a8e720571b3d703 files/digest-embassy-emnu-1.05-r2 127
+SHA256 2b356c7b411784b237d9b1d1d050bddecced1a2b7e7ce458e942dd1b6d768007 files/digest-embassy-emnu-1.05-r2 127
diff --git a/sci-biology/embassy-esim4/Manifest b/sci-biology/embassy-esim4/Manifest
index 25d01118798d..300918dda1df 100644
--- a/sci-biology/embassy-esim4/Manifest
+++ b/sci-biology/embassy-esim4/Manifest
@@ -1,4 +1,17 @@
+DIST EMBOSS-3.0.0.tar.gz 16257908
+DIST ESIM4-1.0.0.tar.gz 384396
+EBUILD embassy-esim4-1.0.0-r2.ebuild 406 RMD160 ff150b5d9ce33b3feda3940168d970da268209dd SHA1 41920367c3f1922288142793aedd767679d7e3c7 SHA256 35c7946573988ee612bc229a3bd8b089f1d3f3d5028599e9feab72a978744c60
 MD5 2ab59eb5e7b5a03c41d62ca854f37728 embassy-esim4-1.0.0-r2.ebuild 406
+RMD160 ff150b5d9ce33b3feda3940168d970da268209dd embassy-esim4-1.0.0-r2.ebuild 406
+SHA256 35c7946573988ee612bc229a3bd8b089f1d3f3d5028599e9feab72a978744c60 embassy-esim4-1.0.0-r2.ebuild 406
+MISC ChangeLog 2291 RMD160 5db0439a60563e0f63404000952e305d3b54447b SHA1 8f32dfc8ecc8eea4199beb4e40a250bb5c1b6b8a SHA256 1452d04d4563f1a5f04207b3e25cf006e76d7ac35318c08f3a43a1ac17674956
 MD5 cda4299c87226d79fe2fe58021d766fe ChangeLog 2291
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 5db0439a60563e0f63404000952e305d3b54447b ChangeLog 2291
+SHA256 1452d04d4563f1a5f04207b3e25cf006e76d7ac35318c08f3a43a1ac17674956 ChangeLog 2291
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 5bb2441547acdf1ebeecdc88441b2bb4 files/digest-embassy-esim4-1.0.0-r2 129
+RMD160 d30b972472d32b55927b1c33a5dca5cab3ef8c37 files/digest-embassy-esim4-1.0.0-r2 129
+SHA256 85c90fe3337e50255e109f9e10f7036ab2e56eea7efcdbc0e754f89a190e70ad files/digest-embassy-esim4-1.0.0-r2 129
diff --git a/sci-biology/embassy-hmmer/Manifest b/sci-biology/embassy-hmmer/Manifest
index 3dacffacec9c..39e101ed8955 100644
--- a/sci-biology/embassy-hmmer/Manifest
+++ b/sci-biology/embassy-hmmer/Manifest
@@ -1,4 +1,17 @@
+DIST EMBOSS-3.0.0.tar.gz 16257908
+DIST HMMER-2.1.1.tar.gz 561289
+EBUILD embassy-hmmer-2.1.1-r2.ebuild 510 RMD160 54360e49c0792ab872fcd5b5d387f55c12901a5a SHA1 b6a8717133fd05e3fbb6df795053574ebf6ddee3 SHA256 66936eebe369d64d08a7c62008764446205fe7961c40dc626593cf37c6194b08
 MD5 d73e5d48d7d5270deaae11d457e36f96 embassy-hmmer-2.1.1-r2.ebuild 510
+RMD160 54360e49c0792ab872fcd5b5d387f55c12901a5a embassy-hmmer-2.1.1-r2.ebuild 510
+SHA256 66936eebe369d64d08a7c62008764446205fe7961c40dc626593cf37c6194b08 embassy-hmmer-2.1.1-r2.ebuild 510
+MISC ChangeLog 2408 RMD160 2938f4b0ea249c5a6a6598f2a619de2721ff2806 SHA1 9f8b6f66d74a6ff70e638eed3aba1e1b2a2de03f SHA256 0223f2bf36988318ae88abb511a1b6a4067a2aa7cea58d9bb4565c0f13934d68
 MD5 b9783866db18e6eab4021895acc3a3db ChangeLog 2408
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 2938f4b0ea249c5a6a6598f2a619de2721ff2806 ChangeLog 2408
+SHA256 0223f2bf36988318ae88abb511a1b6a4067a2aa7cea58d9bb4565c0f13934d68 ChangeLog 2408
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 4a90def166883656ce71a20baa24af62 files/digest-embassy-hmmer-2.1.1-r2 129
+RMD160 85efef54d96e064afd0dcadb060459ba44520b68 files/digest-embassy-hmmer-2.1.1-r2 129
+SHA256 d470128a7c78e88d3506e3b17fa93c3e962f586ffa4ca4065a8b0b0115308557 files/digest-embassy-hmmer-2.1.1-r2 129
diff --git a/sci-biology/embassy-meme/Manifest b/sci-biology/embassy-meme/Manifest
index 33cf1b886935..c013b19e58a0 100644
--- a/sci-biology/embassy-meme/Manifest
+++ b/sci-biology/embassy-meme/Manifest
@@ -1,4 +1,17 @@
+DIST EMBOSS-3.0.0.tar.gz 16257908
+DIST MEME-2.3.1.tar.gz 423966
+EBUILD embassy-meme-2.3.1-r2.ebuild 501 RMD160 b9d5f2817e357b877967b09b4b178991b7cf2629 SHA1 6d425111ecc619fcb5fbc1abf006dfffd0c2fa30 SHA256 dc5495a11d3c623a176d2e60b51486886214102c664725eb69ba88b0bc1528db
 MD5 f06404f32f4cbb5a5dc06f9ef15862bd embassy-meme-2.3.1-r2.ebuild 501
+RMD160 b9d5f2817e357b877967b09b4b178991b7cf2629 embassy-meme-2.3.1-r2.ebuild 501
+SHA256 dc5495a11d3c623a176d2e60b51486886214102c664725eb69ba88b0bc1528db embassy-meme-2.3.1-r2.ebuild 501
+MISC ChangeLog 2380 RMD160 bd1764edff41a65a1abdce8c50aca1ff9073603c SHA1 dca2de25e1e1f2dc253d79dc18e02d9dc1ddee5b SHA256 0f576b1bfc043f767948007f3096902bd5797d978c75c7e74664a41de296674e
 MD5 efb713c0a3d5dd9ca1f317bb865f3e85 ChangeLog 2380
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 bd1764edff41a65a1abdce8c50aca1ff9073603c ChangeLog 2380
+SHA256 0f576b1bfc043f767948007f3096902bd5797d978c75c7e74664a41de296674e ChangeLog 2380
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 9ab3fea01e7a68000a73045dfedbc4c2 files/digest-embassy-meme-2.3.1-r2 128
+RMD160 1cfc50c8fc1ea5c1203fe506e5fb9eee83d0f6fd files/digest-embassy-meme-2.3.1-r2 128
+SHA256 42f328899106370139f1b0ec95d5f4e50ddb9148de2e00ea843db15a5a4eff92 files/digest-embassy-meme-2.3.1-r2 128
diff --git a/sci-biology/embassy-mse/Manifest b/sci-biology/embassy-mse/Manifest
index ba6fceca410b..1426d3b2aa22 100644
--- a/sci-biology/embassy-mse/Manifest
+++ b/sci-biology/embassy-mse/Manifest
@@ -1,4 +1,17 @@
+DIST EMBOSS-3.0.0.tar.gz 16257908
+DIST MSE-1.0.0.tar.gz 415051
+EBUILD embassy-mse-1.0.0-r2.ebuild 485 RMD160 c9595835b0ce601252ea84d2cbf98140a786c1ad SHA1 3bd8602d14d19068608eff090368b6653016fcf3 SHA256 002fa9cc24b440f6a1e8b4fca4df8a9c95d003e632bfacfbe922f0053749a317
 MD5 6f5b5537747aff95e9990dafeb62ea7f embassy-mse-1.0.0-r2.ebuild 485
+RMD160 c9595835b0ce601252ea84d2cbf98140a786c1ad embassy-mse-1.0.0-r2.ebuild 485
+SHA256 002fa9cc24b440f6a1e8b4fca4df8a9c95d003e632bfacfbe922f0053749a317 embassy-mse-1.0.0-r2.ebuild 485
+MISC ChangeLog 2352 RMD160 ec6eac08e37ac5c1050519665b911f9cf0f19353 SHA1 0807379fd701a007a5abbab0824d781696a7f577 SHA256 24d88fb715577f2ef963c12b3e46facfe7f456b1b850e998e7c4a20cb5d2bce3
 MD5 dc4f7558c1376eabe2974296e9b58898 ChangeLog 2352
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 ec6eac08e37ac5c1050519665b911f9cf0f19353 ChangeLog 2352
+SHA256 24d88fb715577f2ef963c12b3e46facfe7f456b1b850e998e7c4a20cb5d2bce3 ChangeLog 2352
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 bea5f5f5045bc8d375f74b5212b5dad7 files/digest-embassy-mse-1.0.0-r2 127
+RMD160 0fa82f5542b749f30d035a15ce8df69ff2c0da61 files/digest-embassy-mse-1.0.0-r2 127
+SHA256 a86f92ac2674771e026006bbbc2ae1d23722ca35fabe07242eb008157b16a68b files/digest-embassy-mse-1.0.0-r2 127
diff --git a/sci-biology/embassy-phylip/Manifest b/sci-biology/embassy-phylip/Manifest
index 64b8c11b35c3..ce938105cd3c 100644
--- a/sci-biology/embassy-phylip/Manifest
+++ b/sci-biology/embassy-phylip/Manifest
@@ -1,4 +1,17 @@
+DIST EMBOSS-3.0.0.tar.gz 16257908
+DIST PHYLIP-3.6b.tar.gz 1136543
+EBUILD embassy-phylip-3.6b.ebuild 393 RMD160 c22836f145b327777e65a054db7e58c6f0a545f1 SHA1 e3db41e2980e6a48964bdae7fc68183210e81593 SHA256 c839c9b7dec70f1211d097453e4803af00abec12a75d0d3f1d71881805c7f734
 MD5 e35a5f9cfdda0c0aa314329b9c74ab60 embassy-phylip-3.6b.ebuild 393
+RMD160 c22836f145b327777e65a054db7e58c6f0a545f1 embassy-phylip-3.6b.ebuild 393
+SHA256 c839c9b7dec70f1211d097453e4803af00abec12a75d0d3f1d71881805c7f734 embassy-phylip-3.6b.ebuild 393
+MISC ChangeLog 2489 RMD160 f6a92770126e0aa1520ae0831d9ff9042f37cc12 SHA1 ee854b1903612887b56967fb4ed7e153da3ffb3f SHA256 66aaa305a59b8f615179f7c958c676155a57f62e67139540714b89ebfd1e403d
 MD5 a2b570f2b5c660443442a9714af8eae7 ChangeLog 2489
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 f6a92770126e0aa1520ae0831d9ff9042f37cc12 ChangeLog 2489
+SHA256 66aaa305a59b8f615179f7c958c676155a57f62e67139540714b89ebfd1e403d ChangeLog 2489
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 978cd4a1287782dfdfa9d899315501eb files/digest-embassy-phylip-3.6b 130
+RMD160 8f1f0cd8f31c4cb9a257b55b940a026a6b1ab645 files/digest-embassy-phylip-3.6b 130
+SHA256 007444ec1942a8569d767cac6049e3c7e0e25e011fdb5a84fa062fc49ea5a9b6 files/digest-embassy-phylip-3.6b 130
diff --git a/sci-biology/embassy-signature/Manifest b/sci-biology/embassy-signature/Manifest
index 1d7c0bd80da2..d2f3d5883f1a 100644
--- a/sci-biology/embassy-signature/Manifest
+++ b/sci-biology/embassy-signature/Manifest
@@ -1,4 +1,17 @@
+DIST EMBOSS-3.0.0.tar.gz 16257908
+DIST SIGNATURE-0.1.0.tar.gz 400125
+EBUILD embassy-signature-0.1.0.ebuild 364 RMD160 7da47a5cc308ec31bdfa63a5044e718afb45e933 SHA1 0a61831e75cbc097900afbae9c9795c86ab31991 SHA256 e46a2663a159e46fd1f6f7b78d39822318453b20066deee07227c52909efb379
 MD5 9b3f63f44fc7d4adcc2564c9fb22f779 embassy-signature-0.1.0.ebuild 364
+RMD160 7da47a5cc308ec31bdfa63a5044e718afb45e933 embassy-signature-0.1.0.ebuild 364
+SHA256 e46a2663a159e46fd1f6f7b78d39822318453b20066deee07227c52909efb379 embassy-signature-0.1.0.ebuild 364
+MISC ChangeLog 808 RMD160 b762ca08e0644e88c9c6cfa79efc12e59784e832 SHA1 fc925fb98f1b4b74356b9d0f2526398545f25f30 SHA256 a4bd7932d967460d5b8918b649e686387fb8e00af43d017b8de44bd45e634be5
 MD5 3bcba68baf3d66ba49a9d7635d75ae7e ChangeLog 808
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 b762ca08e0644e88c9c6cfa79efc12e59784e832 ChangeLog 808
+SHA256 a4bd7932d967460d5b8918b649e686387fb8e00af43d017b8de44bd45e634be5 ChangeLog 808
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 853053d740253ee5448f65ac25365cc0 files/digest-embassy-signature-0.1.0 133
+RMD160 ee1631f5b578809591e141792d3e56c7fcc9ee0c files/digest-embassy-signature-0.1.0 133
+SHA256 b58312c39640d8097518a38339327e660b92b586275268aea25626ed80be21bd files/digest-embassy-signature-0.1.0 133
diff --git a/sci-biology/embassy-structure/Manifest b/sci-biology/embassy-structure/Manifest
index de21da446624..296a0a3486e5 100644
--- a/sci-biology/embassy-structure/Manifest
+++ b/sci-biology/embassy-structure/Manifest
@@ -1,4 +1,17 @@
+DIST EMBOSS-3.0.0.tar.gz 16257908
+DIST STRUCTURE-0.1.0.tar.gz 362563
+EBUILD embassy-structure-0.1.0.ebuild 364 RMD160 588f69dbb9a5c5cebca752efe52ad3ea18392634 SHA1 e49a9b00e360c3433fa4e2210e72537c5b275129 SHA256 46b0326c2312b08ab167b01f60d12963084c9da6cd44fd88005aa551510f6171
 MD5 0d01ff9ff4410bac32cdddd329796ada embassy-structure-0.1.0.ebuild 364
+RMD160 588f69dbb9a5c5cebca752efe52ad3ea18392634 embassy-structure-0.1.0.ebuild 364
+SHA256 46b0326c2312b08ab167b01f60d12963084c9da6cd44fd88005aa551510f6171 embassy-structure-0.1.0.ebuild 364
+MISC ChangeLog 808 RMD160 7387a58e34747fc80b39e7279c3d11058c2ae965 SHA1 f429b9f822895206d882857fb24696bf860d375c SHA256 57f5c8439cb17431f125f7f6817cd16392157bbe4dba8502ce352904ee313831
 MD5 b6a8d6c9aa561aec3f300b343d264e5e ChangeLog 808
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 7387a58e34747fc80b39e7279c3d11058c2ae965 ChangeLog 808
+SHA256 57f5c8439cb17431f125f7f6817cd16392157bbe4dba8502ce352904ee313831 ChangeLog 808
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 2071557ab698dfe994fece8b8bfccfd4 files/digest-embassy-structure-0.1.0 133
+RMD160 757409d709bf23484202ef0c9cbd049543ba329d files/digest-embassy-structure-0.1.0 133
+SHA256 ec328c6c069427f84d355629b6a7c368cbb24e43b9d85f9bc795b032620d3631 files/digest-embassy-structure-0.1.0 133
diff --git a/sci-biology/embassy-topo/Manifest b/sci-biology/embassy-topo/Manifest
index 063aa372293a..9a760860dffc 100644
--- a/sci-biology/embassy-topo/Manifest
+++ b/sci-biology/embassy-topo/Manifest
@@ -1,4 +1,17 @@
+DIST EMBOSS-3.0.0.tar.gz 16257908
+DIST TOPO-1.0.0.tar.gz 351796
+EBUILD embassy-topo-1.0.0-r2.ebuild 400 RMD160 4c4911bd5be269c680187696e1bf17323d003182 SHA1 a03a9c19939a739d502458efef4b71644826c692 SHA256 4f529e4e50f2788557ef7027a574200f37ea78b388dbdb60bd9b297b5176a1c2
 MD5 c9ed9dfbc60405d7e959f5a73a995052 embassy-topo-1.0.0-r2.ebuild 400
+RMD160 4c4911bd5be269c680187696e1bf17323d003182 embassy-topo-1.0.0-r2.ebuild 400
+SHA256 4f529e4e50f2788557ef7027a574200f37ea78b388dbdb60bd9b297b5176a1c2 embassy-topo-1.0.0-r2.ebuild 400
+MISC ChangeLog 2273 RMD160 d338ebcacf8cf1a21f2b2c6c3070395f5475e1d1 SHA1 b8dfa24eae335a26d762dddc09a818d66458d44e SHA256 19688be5c9a3aa02c88df03c7f8bae997b56c0742eac4207b479c7421034dbf2
 MD5 148ecdbcb3d847f4654d587eaf1c9a5e ChangeLog 2273
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 d338ebcacf8cf1a21f2b2c6c3070395f5475e1d1 ChangeLog 2273
+SHA256 19688be5c9a3aa02c88df03c7f8bae997b56c0742eac4207b479c7421034dbf2 ChangeLog 2273
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 fd518071e49bfb96e2a567c469ed4d50 files/digest-embassy-topo-1.0.0-r2 128
+RMD160 f1c89ca42581eeefbc4a9e037abd0f42c1ed5199 files/digest-embassy-topo-1.0.0-r2 128
+SHA256 b162a3656b6d40d51e893add08a4f390288ebeb2ef621565c2882a033df9a23b files/digest-embassy-topo-1.0.0-r2 128
diff --git a/sci-biology/embassy/Manifest b/sci-biology/embassy/Manifest
index 1ea020bcdeb3..353b6dbe0fca 100644
--- a/sci-biology/embassy/Manifest
+++ b/sci-biology/embassy/Manifest
@@ -1,4 +1,15 @@
+EBUILD embassy-3.0.0.ebuild 1342 RMD160 912bdb83d8c9eed85c4e0d4d7c485eecd5befaa3 SHA1 47bc0815a2af66e222fca7aac3a55a9e657227b1 SHA256 27662c66f1a15111027e3b5dde190e6b5e8175059bd3aee3fe0d4373be011261
 MD5 928acb7edad2d962f3c8e715dbac5d0a embassy-3.0.0.ebuild 1342
+RMD160 912bdb83d8c9eed85c4e0d4d7c485eecd5befaa3 embassy-3.0.0.ebuild 1342
+SHA256 27662c66f1a15111027e3b5dde190e6b5e8175059bd3aee3fe0d4373be011261 embassy-3.0.0.ebuild 1342
+MISC ChangeLog 2696 RMD160 b54a2330f4d662505ee88323d9d969445c9416b8 SHA1 5313145f601a52964d0e59ec9ded8c716541d87f SHA256 9ad34b661a4a0a50328713f4ee217b73826aca2d31ac2888eea9bbe771641b8a
 MD5 70d7def4e1bfac50a1714a6742661e99 ChangeLog 2696
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
-MD5 d41d8cd98f00b204e9800998ecf8427e files/digest-embassy-3.0.0 0
+RMD160 b54a2330f4d662505ee88323d9d969445c9416b8 ChangeLog 2696
+SHA256 9ad34b661a4a0a50328713f4ee217b73826aca2d31ac2888eea9bbe771641b8a ChangeLog 2696
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
+MD5 68b329da9893e34099c7d8ad5cb9c940 files/digest-embassy-3.0.0 1
+RMD160 c0da025038ed83c687ddc430da9846ecb97f3998 files/digest-embassy-3.0.0 1
+SHA256 01ba4719c80b6fe911b091a7c05124b64eeece964e09c058ef8f9805daca546b files/digest-embassy-3.0.0 1
diff --git a/sci-biology/emboss-kaptain/Manifest b/sci-biology/emboss-kaptain/Manifest
index 56d4ac0e276f..2cd80456bea2 100644
--- a/sci-biology/emboss-kaptain/Manifest
+++ b/sci-biology/emboss-kaptain/Manifest
@@ -1,4 +1,16 @@
+DIST EMBOSS.kaptns_0.97.tar.gz 149263
+EBUILD emboss-kaptain-0.97-r1.ebuild 1347 RMD160 70392e13aa5cbc9395bf3d64c85046bea122db38 SHA1 d786e6229763ad038f8622a4634ba89b331fa009 SHA256 2773b72b3480de8338bd2f76d4b0fc653a3a44e59d4b34c331fbb59f8de3b8de
 MD5 31bb030b7f3ffe010cd6263731c70caa emboss-kaptain-0.97-r1.ebuild 1347
+RMD160 70392e13aa5cbc9395bf3d64c85046bea122db38 emboss-kaptain-0.97-r1.ebuild 1347
+SHA256 2773b72b3480de8338bd2f76d4b0fc653a3a44e59d4b34c331fbb59f8de3b8de emboss-kaptain-0.97-r1.ebuild 1347
+MISC ChangeLog 1153 RMD160 0c89b7413893c1dd4b83643d1a57b3c0ef36cecb SHA1 1633ec3d35830074e0ce41d7c7366559cc197589 SHA256 9cf21efb1d9bc3fd73b62ac100e1207339005e1c0fa87f6fa801b7696ec86617
 MD5 57ebb41aa710b14d01f0a50550db6eae ChangeLog 1153
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 0c89b7413893c1dd4b83643d1a57b3c0ef36cecb ChangeLog 1153
+SHA256 9cf21efb1d9bc3fd73b62ac100e1207339005e1c0fa87f6fa801b7696ec86617 ChangeLog 1153
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 25e58e7c514be03e50f128e66179551d files/digest-emboss-kaptain-0.97-r1 70
+RMD160 ceafce03bec24673eeb7e9f58f12eb3346304fb3 files/digest-emboss-kaptain-0.97-r1 70
+SHA256 01ddc9a165d913ca967a8cd952f1e8984203f05f0d46f5e5cf907957095b7e57 files/digest-emboss-kaptain-0.97-r1 70
diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest
index eb84d75682de..f462a5faabe7 100644
--- a/sci-biology/emboss/Manifest
+++ b/sci-biology/emboss/Manifest
@@ -1,6 +1,24 @@
-MD5 95d37ca94e9f151baa361c99256be065 ChangeLog 6487
-MD5 4194379dc2f45d117ac8eba69934c27d emboss-3.0.0-r1.ebuild 2948
+AUX 22emboss-r1 110 RMD160 aa416dbfca66cc7822ed162122addadde2756c66 SHA1 c77b477bfdf0e77de4f29794e4fb2e7592557e48 SHA256 cf3bd3b8d2638a0cd14e57839033d63c855114a0e12883bbc7a5106b0cfc01ad
 MD5 ef2dfa3d13837026f59c0cf5f04f67c5 files/22emboss-r1 110
+RMD160 aa416dbfca66cc7822ed162122addadde2756c66 files/22emboss-r1 110
+SHA256 cf3bd3b8d2638a0cd14e57839033d63c855114a0e12883bbc7a5106b0cfc01ad files/22emboss-r1 110
+AUX README.Gentoo 1326 RMD160 bfaa4d7d1218d3bd4ea58d54d000da7f58b6bca6 SHA1 8cf13b8aa23c11f0af2aae06916970bf9d8a441f SHA256 33b517b977cc85824847bd6cf4113489a5554fb014f1a6b1d22d6f80c3487e9f
 MD5 615888722f8d6a0c918f936e0cc1cfcd files/README.Gentoo 1326
+RMD160 bfaa4d7d1218d3bd4ea58d54d000da7f58b6bca6 files/README.Gentoo 1326
+SHA256 33b517b977cc85824847bd6cf4113489a5554fb014f1a6b1d22d6f80c3487e9f files/README.Gentoo 1326
+DIST EMBOSS-3.0.0.tar.gz 16257908
+EBUILD emboss-3.0.0-r1.ebuild 2948 RMD160 f11fdb1915a5d2617ec7fac90eac23a28a995d5b SHA1 192b9ffdb0d0d94b2255c4b596d7228ec30a7c5b SHA256 5746e17de8b1b4c0523b4cf04e721312b4890299311393b076d5551e85cf87d7
+MD5 4194379dc2f45d117ac8eba69934c27d emboss-3.0.0-r1.ebuild 2948
+RMD160 f11fdb1915a5d2617ec7fac90eac23a28a995d5b emboss-3.0.0-r1.ebuild 2948
+SHA256 5746e17de8b1b4c0523b4cf04e721312b4890299311393b076d5551e85cf87d7 emboss-3.0.0-r1.ebuild 2948
+MISC ChangeLog 6487 RMD160 6270ccf1b031c83eb29a8453f026023aa591d5c5 SHA1 03d10c702834b247f2c00b5ef79eef62dce9d6f1 SHA256 4841638c868680b3f0c80bfbb48df6b218c453adda140ca6b7f44b42b2db74cd
+MD5 95d37ca94e9f151baa361c99256be065 ChangeLog 6487
+RMD160 6270ccf1b031c83eb29a8453f026023aa591d5c5 ChangeLog 6487
+SHA256 4841638c868680b3f0c80bfbb48df6b218c453adda140ca6b7f44b42b2db74cd ChangeLog 6487
+MISC metadata.xml 1021 RMD160 ee767f436af5f815ecb9526df9063438dab8eb14 SHA1 eff46db435f88e0b457ce2a38e5ff786ae6324e1 SHA256 0c5af548d0483d41a3344695cb04acaf0974fb56b70bc1e2ec0a9749ecbc45a0
+MD5 ecba11e4d50ee5cc740817f5becffa83 metadata.xml 1021
+RMD160 ee767f436af5f815ecb9526df9063438dab8eb14 metadata.xml 1021
+SHA256 0c5af548d0483d41a3344695cb04acaf0974fb56b70bc1e2ec0a9749ecbc45a0 metadata.xml 1021
 MD5 84fbde044d74a82c084fa22d5d59ae8e files/digest-emboss-3.0.0-r1 66
-MD5 6051afb1f26bf343082490327784b958 metadata.xml 1013
+RMD160 bacfaf49534b5313c65e3969685f9867550c34b0 files/digest-emboss-3.0.0-r1 66
+SHA256 bdca0dd643312ce9f1a2bbeec7c2098c12ad1427ce475be0d73270a4b4eee891 files/digest-emboss-3.0.0-r1 66
diff --git a/sci-biology/foldingathome/Manifest b/sci-biology/foldingathome/Manifest
index 2e1d3086a3d2..f4bd063b7b1c 100644
--- a/sci-biology/foldingathome/Manifest
+++ b/sci-biology/foldingathome/Manifest
@@ -39,10 +39,10 @@ MISC ChangeLog 6132 RMD160 cbdc575c9481135f02f695be92e32a34ff86d355 SHA1 a80ed84
 MD5 e7a06446fb3daa7aa7f2f06f49dc2d49 ChangeLog 6132
 RMD160 cbdc575c9481135f02f695be92e32a34ff86d355 ChangeLog 6132
 SHA256 53311260c51e75b8edf8e435fc3c6cc8e2af5117fb1c6d59d93338f9e74586f7 ChangeLog 6132
-MISC metadata.xml 156 RMD160 dc078172bfebcb25d69bdf8731714f9cce9d3e36 SHA1 da2b240a255820145b7c83a5c48e45b96b7e9ee6 SHA256 5d22100902db7507a5b5493dd4a66cdb08025faf80a2c0b75e6392315c47f900
-MD5 8c623e53daafa025137077c6b65815bd metadata.xml 156
-RMD160 dc078172bfebcb25d69bdf8731714f9cce9d3e36 metadata.xml 156
-SHA256 5d22100902db7507a5b5493dd4a66cdb08025faf80a2c0b75e6392315c47f900 metadata.xml 156
+MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
+MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
+RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
+SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
 MD5 d39886a997a5021a1cb3be852aa0d2de files/digest-foldingathome-5.0.2-r3 229
 RMD160 a1ba0061fa5cf60fc4d9e4e4762025e8ec481d25 files/digest-foldingathome-5.0.2-r3 229
 SHA256 bb8544c52290ebf517fbd3ebd292bb4108f89bb4b667420fad3e9ae4e3b019c9 files/digest-foldingathome-5.0.2-r3 229
diff --git a/sci-biology/generic-genome-browser/Manifest b/sci-biology/generic-genome-browser/Manifest
index 19645baa801f..1f792d4c6546 100644
--- a/sci-biology/generic-genome-browser/Manifest
+++ b/sci-biology/generic-genome-browser/Manifest
@@ -1,14 +1,16 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
+DIST Generic-Genome-Browser-1.58.tar.gz 1207583
+EBUILD generic-genome-browser-1.58.ebuild 2032 RMD160 2e6d2d2cd4e655a110eb49f66d6bf47aac65e8a2 SHA1 b31554d1f8ff84a7a284c9118d40d5c8062ccd7a SHA256 5be926d03de179b6fe609fb1686801e8aa90815e5ed952460f48ccc147df535d
+MD5 e5c61cca5f76988697bbd195d88053d8 generic-genome-browser-1.58.ebuild 2032
+RMD160 2e6d2d2cd4e655a110eb49f66d6bf47aac65e8a2 generic-genome-browser-1.58.ebuild 2032
+SHA256 5be926d03de179b6fe609fb1686801e8aa90815e5ed952460f48ccc147df535d generic-genome-browser-1.58.ebuild 2032
+MISC ChangeLog 1385 RMD160 191c8018cfa5d9c531372f11efa47f484823c98c SHA1 8dd165f42eaf90e591b768b2b3154645eb000110 SHA256 b8614edaed84fc7a799f15b45077d2c112bf24b1fe9d4a2ae15a4a505a40bdd4
 MD5 4157d1b507972bb3050d55eeaceaced2 ChangeLog 1385
+RMD160 191c8018cfa5d9c531372f11efa47f484823c98c ChangeLog 1385
+SHA256 b8614edaed84fc7a799f15b45077d2c112bf24b1fe9d4a2ae15a4a505a40bdd4 ChangeLog 1385
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 a46a3f4a12816bb198f2f532a605ba11 files/digest-generic-genome-browser-1.58 80
-MD5 e5c61cca5f76988697bbd195d88053d8 generic-genome-browser-1.58.ebuild 2032
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.1 (GNU/Linux)
-
-iD8DBQFD8KECtG5z4I8BtQoRAobmAJ9bHJB/GOaNhLgGPx22E5zi0Y1TvgCfcYGa
-BMlnoMcidPjslR0fWx9jnLQ=
-=Uy3a
------END PGP SIGNATURE-----
+RMD160 f646620d9b7085ff8ac65c2b99d453e2570c93cf files/digest-generic-genome-browser-1.58 80
+SHA256 8a61104947f00a196a147fb99209c4fad946fecfd630c6fc7f89e66603b1ff2e files/digest-generic-genome-browser-1.58 80
diff --git a/sci-biology/gibbs/Manifest b/sci-biology/gibbs/Manifest
index a603822c406b..2073f69960ee 100644
--- a/sci-biology/gibbs/Manifest
+++ b/sci-biology/gibbs/Manifest
@@ -1,5 +1,20 @@
-MD5 00e4aa711cc90762a7867d2287e5cac1 ChangeLog 994
-MD5 66fc93b605c52540a93a218f931abc01 files/digest-gibbs-1995.9 58
+AUX gibbs-demo 313 RMD160 6c986ae90b15f400884146c4eb3bde9fd05696e9 SHA1 c615f608fd85cb409ffbdacafaa90e46c0d8a26b SHA256 018ea72b23f41bd1b5945a58c4e577fb1274484e624fc8c10f96b23bf3d827b4
 MD5 5d1c8a0323c1506ec063c702ff2013ba files/gibbs-demo 313
+RMD160 6c986ae90b15f400884146c4eb3bde9fd05696e9 files/gibbs-demo 313
+SHA256 018ea72b23f41bd1b5945a58c4e577fb1274484e624fc8c10f96b23bf3d827b4 files/gibbs-demo 313
+DIST gibbs9_95.tar 598016
+EBUILD gibbs-1995.9.ebuild 1210 RMD160 d36f9357fd636a223ab649cd42f2958e05f1d6da SHA1 a3b7cf06e71e309efa6a245fcf5c598a3600ca43 SHA256 d0addec202bf7370654adedfdf6add9f2d8533d392e246a10bf0ea8bb656ed3d
 MD5 340cd9bced8b4abfa09f74ca33da6f9f gibbs-1995.9.ebuild 1210
-MD5 3c9575b8f66a5705761203f6ff59812e metadata.xml 379
+RMD160 d36f9357fd636a223ab649cd42f2958e05f1d6da gibbs-1995.9.ebuild 1210
+SHA256 d0addec202bf7370654adedfdf6add9f2d8533d392e246a10bf0ea8bb656ed3d gibbs-1995.9.ebuild 1210
+MISC ChangeLog 994 RMD160 5ee64c99b7af16ce52f5d0d93c37681e56bfddc5 SHA1 72cfd70a3b53f22c415acb845630a68ffecee05f SHA256 98fc9f7287a1b2c33a52b8983e351e4b59506c76e0ff44b7f0f2bd3a042f8adf
+MD5 00e4aa711cc90762a7867d2287e5cac1 ChangeLog 994
+RMD160 5ee64c99b7af16ce52f5d0d93c37681e56bfddc5 ChangeLog 994
+SHA256 98fc9f7287a1b2c33a52b8983e351e4b59506c76e0ff44b7f0f2bd3a042f8adf ChangeLog 994
+MISC metadata.xml 387 RMD160 3c4408949179f2c1d55cc49423d944ce077d3d03 SHA1 d3854dbe74c13d22b3eb6eec2c90720bafb87c50 SHA256 426934f62d87bc1d4135a8f27f06297abfb36321f20ed96f3b32beb7f7a44e27
+MD5 feff9fbec978c3c3cda3a0ef4067bdb5 metadata.xml 387
+RMD160 3c4408949179f2c1d55cc49423d944ce077d3d03 metadata.xml 387
+SHA256 426934f62d87bc1d4135a8f27f06297abfb36321f20ed96f3b32beb7f7a44e27 metadata.xml 387
+MD5 66fc93b605c52540a93a218f931abc01 files/digest-gibbs-1995.9 58
+RMD160 c36f3bc379bafb2af5d68d073d48388cf1a094b8 files/digest-gibbs-1995.9 58
+SHA256 ef1d5e0b256601cae20180db7b0bbd5108b77b00878d48070fb2b63977177a79 files/digest-gibbs-1995.9 58
diff --git a/sci-biology/hmmer/Manifest b/sci-biology/hmmer/Manifest
index 0fe1c5a992f0..2d122a7e5730 100644
--- a/sci-biology/hmmer/Manifest
+++ b/sci-biology/hmmer/Manifest
@@ -1,6 +1,23 @@
+DIST hmmer-2.3.2.tar.gz 1024933
+EBUILD hmmer-2.3.2-r1.ebuild 1164 RMD160 e1b7bd59414d923fbe6f7221a3c5c37ecd635d8b SHA1 4d1193547c7a4d01457ff77bbb704c49a303883d SHA256 c4d5aee8b3d8db7048dca0dae539b725bab07cdbbba70a87b2f86148ac5064f7
+MD5 ed024bdb601035b82108ed33b29ec89a hmmer-2.3.2-r1.ebuild 1164
+RMD160 e1b7bd59414d923fbe6f7221a3c5c37ecd635d8b hmmer-2.3.2-r1.ebuild 1164
+SHA256 c4d5aee8b3d8db7048dca0dae539b725bab07cdbbba70a87b2f86148ac5064f7 hmmer-2.3.2-r1.ebuild 1164
+EBUILD hmmer-2.3.2-r2.ebuild 1156 RMD160 6947e07675323388993d1f628f622646949ce001 SHA1 9c7d435ed04f2618155a185f54aa4245b086c0f4 SHA256 51063fffdaaab66274a2a650dd64e9d1c199eb820e749396db1b1c3960329589
+MD5 3e3266941037ad483e2a8e0e8cf34f72 hmmer-2.3.2-r2.ebuild 1156
+RMD160 6947e07675323388993d1f628f622646949ce001 hmmer-2.3.2-r2.ebuild 1156
+SHA256 51063fffdaaab66274a2a650dd64e9d1c199eb820e749396db1b1c3960329589 hmmer-2.3.2-r2.ebuild 1156
+MISC ChangeLog 2868 RMD160 0f823513ecbbc51097eaadf69451ec07b729b6ac SHA1 fda3cda9ac35f7b45cb9ae0cbef8d18bb2fc5aed SHA256 e0a15ac25dd347429e8431fcbb3c7f4c50ef710bb05b58d87d94d02bb6049983
 MD5 1d5c94338710511ff2cb090646118bcd ChangeLog 2868
+RMD160 0f823513ecbbc51097eaadf69451ec07b729b6ac ChangeLog 2868
+SHA256 e0a15ac25dd347429e8431fcbb3c7f4c50ef710bb05b58d87d94d02bb6049983 ChangeLog 2868
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2-r1 64
+RMD160 de81d6edb0e87894edf7bdb160515180f8b0e78a files/digest-hmmer-2.3.2-r1 64
+SHA256 dec4479a66bc6be992f47a41f7b77d7062c9171cf7ba059e8ed1866de9a12aef files/digest-hmmer-2.3.2-r1 64
 MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2-r2 64
-MD5 ed024bdb601035b82108ed33b29ec89a hmmer-2.3.2-r1.ebuild 1164
-MD5 3e3266941037ad483e2a8e0e8cf34f72 hmmer-2.3.2-r2.ebuild 1156
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 de81d6edb0e87894edf7bdb160515180f8b0e78a files/digest-hmmer-2.3.2-r2 64
+SHA256 dec4479a66bc6be992f47a41f7b77d7062c9171cf7ba059e8ed1866de9a12aef files/digest-hmmer-2.3.2-r2 64
diff --git a/sci-biology/mrbayes/Manifest b/sci-biology/mrbayes/Manifest
index e8e0ba20a6e6..1ab85d8e8c95 100644
--- a/sci-biology/mrbayes/Manifest
+++ b/sci-biology/mrbayes/Manifest
@@ -16,10 +16,10 @@ MISC ChangeLog 1702 RMD160 342a58ecc61c57768c5c7ad79a7f4c415c51008a SHA1 52cdfa1
 MD5 05dcf03519a265a67cbb22da008885b2 ChangeLog 1702
 RMD160 342a58ecc61c57768c5c7ad79a7f4c415c51008a ChangeLog 1702
 SHA256 956dadfb7e36ce3153c6814155cb38e8e248d8fd29a72c28b63d83f3554fce1c ChangeLog 1702
-MISC metadata.xml 817 RMD160 cd72cc135ce5e001c34806b22bfe3f3190034eb7 SHA1 eca5791bda6e46af4ee5964c7a9b5de15ad923ac SHA256 4a31e7fb98bd82d6a47314c938f16a2e9808e8b358377a1f6cc4826d7a3ac1ef
-MD5 46d1202caca9c2f105090b5cc095f7e9 metadata.xml 817
-RMD160 cd72cc135ce5e001c34806b22bfe3f3190034eb7 metadata.xml 817
-SHA256 4a31e7fb98bd82d6a47314c938f16a2e9808e8b358377a1f6cc4826d7a3ac1ef metadata.xml 817
+MISC metadata.xml 825 RMD160 06e4864d17e8b16a8b58f18824ecadd027565a69 SHA1 07629facae7a677f543312424c3d42109076c49a SHA256 261c308d2f6d628e72d147250fdf51020f672d75d5c845f5895be57bb70b6c0f
+MD5 7b813e8f792c4f32de65977eaec04cb1 metadata.xml 825
+RMD160 06e4864d17e8b16a8b58f18824ecadd027565a69 metadata.xml 825
+SHA256 261c308d2f6d628e72d147250fdf51020f672d75d5c845f5895be57bb70b6c0f metadata.xml 825
 MD5 633f96bc05400c5b178fdc58853587b5 files/digest-mrbayes-3.1.1 69
 RMD160 e096b2877d2203b9394425eb43c47fe774da7156 files/digest-mrbayes-3.1.1 69
 SHA256 9fe82b4f13d533a317ec9e2a2536598b7867e9369bafa0fece4944d3fd11f554 files/digest-mrbayes-3.1.1 69
diff --git a/sci-biology/muscle/Manifest b/sci-biology/muscle/Manifest
index 03a04bb9332d..23a97a6481c5 100644
--- a/sci-biology/muscle/Manifest
+++ b/sci-biology/muscle/Manifest
@@ -7,10 +7,10 @@ MISC ChangeLog 599 RMD160 3e0269c6e66ea18f7092a6d260db970dcbec5ae2 SHA1 01da762e
 MD5 e547df90c192b670c3d7fead95786217 ChangeLog 599
 RMD160 3e0269c6e66ea18f7092a6d260db970dcbec5ae2 ChangeLog 599
 SHA256 d9ea4807a48b22d58817ba08c7557a01475df0ab9c6e1d48ca34a3504f473416 ChangeLog 599
-MISC metadata.xml 248 RMD160 2a9b569fa64bc3db0e1164e89b612d23e99b8a96 SHA1 54746d4fbc728176fc1ffa9d38d34449dbe191f4 SHA256 803c22736a7dd04ff00470d60e120801a4b00821e734d790270eb9d46803ea86
-MD5 9b7f6ded82afdd3e3470083654f49745 metadata.xml 248
-RMD160 2a9b569fa64bc3db0e1164e89b612d23e99b8a96 metadata.xml 248
-SHA256 803c22736a7dd04ff00470d60e120801a4b00821e734d790270eb9d46803ea86 metadata.xml 248
+MISC metadata.xml 256 RMD160 7d3c707d8af4ab77e85a50612373e3e55c1bba9d SHA1 df9a21f9818659e6a14af34e15128b1683b8ccb7 SHA256 25e19d829dce6b1dc9988bf781c16099deba0d99c6e316a07f852c01fbd07af6
+MD5 de1e476ee40ca1aa1c0b268af045afde metadata.xml 256
+RMD160 7d3c707d8af4ab77e85a50612373e3e55c1bba9d metadata.xml 256
+SHA256 25e19d829dce6b1dc9988bf781c16099deba0d99c6e316a07f852c01fbd07af6 metadata.xml 256
 MD5 2ce7fc1feec78dd7428b1bfb6dca6f48 files/digest-muscle-3.6 241
 RMD160 00cdfc0a67940e555cae9b2917a3e59e4a880f44 files/digest-muscle-3.6 241
 SHA256 ff5d1ffa1cd22ba1ee71b8af23f4f92d25ae80f8fa88bf0ed303d0d8c3799cbd files/digest-muscle-3.6 241
diff --git a/sci-biology/ncbi-tools/Manifest b/sci-biology/ncbi-tools/Manifest
index d15499f617c5..2060452525f8 100644
--- a/sci-biology/ncbi-tools/Manifest
+++ b/sci-biology/ncbi-tools/Manifest
@@ -35,10 +35,10 @@ MISC ChangeLog 10310 RMD160 76a6fd69dfaf8ece2b7e539e1e7b672fb9fb1936 SHA1 be4ed7
 MD5 ce1a7aad2bbe7e3d4056e2907d10295d ChangeLog 10310
 RMD160 76a6fd69dfaf8ece2b7e539e1e7b672fb9fb1936 ChangeLog 10310
 SHA256 83c13a266bae29dd2ce55c4ab2d9a33cfa3ab03efd135f91f6268580ec0aa6ba ChangeLog 10310
-MISC metadata.xml 254 RMD160 f02847af149737bf8044b3de239c5bd4b42abca5 SHA1 39b2c27b727742ea30045ab645b5a3ef433247a6 SHA256 3392ded43ad861595a8cfeb0441342fdbcd6e731b4793c3e8a22ff927ce09f27
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
-RMD160 f02847af149737bf8044b3de239c5bd4b42abca5 metadata.xml 254
-SHA256 3392ded43ad861595a8cfeb0441342fdbcd6e731b4793c3e8a22ff927ce09f27 metadata.xml 254
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
 MD5 66d6b9cd49c8d8d4845c503705dd03f5 files/digest-ncbi-tools-20050605 332
 RMD160 8728aaceaa2443484ecbc15c3344f0036201385c files/digest-ncbi-tools-20050605 332
 SHA256 136ba7de0b0d5ea18d8f4d87f5e126e79c2d8b838f38cba81df8de0b6f70fa2a files/digest-ncbi-tools-20050605 332
diff --git a/sci-biology/njplot/Manifest b/sci-biology/njplot/Manifest
index 4f19564c52f9..7b83377c02dd 100644
--- a/sci-biology/njplot/Manifest
+++ b/sci-biology/njplot/Manifest
@@ -1,4 +1,16 @@
+DIST njplot-20050109.tar.bz2 36953
+EBUILD njplot-20050109.ebuild 874 RMD160 c973658eff0b7b7c4b2e29dd9db3ce6572014cdb SHA1 73796c169078faee1f1ec52411557d6866a3115f SHA256 31f999129400435d1bb36f31991e986a36c246b42340ac2873711feb8232435f
+MD5 1b3d074e93dd09a3b91af5f9e7301a7d njplot-20050109.ebuild 874
+RMD160 c973658eff0b7b7c4b2e29dd9db3ce6572014cdb njplot-20050109.ebuild 874
+SHA256 31f999129400435d1bb36f31991e986a36c246b42340ac2873711feb8232435f njplot-20050109.ebuild 874
+MISC ChangeLog 1232 RMD160 ca088bc6d8c904d127d8dfa06eb7cb1ace3a1d9d SHA1 bc5f211f4cf465494ef288370f3cde95e813b2a2 SHA256 59ddf70103128c9cd031718166ebf87d81d110acfd8f31786a03ad2acb3679ca
 MD5 621d79aa1af0954272a7002c710b7e76 ChangeLog 1232
+RMD160 ca088bc6d8c904d127d8dfa06eb7cb1ace3a1d9d ChangeLog 1232
+SHA256 59ddf70103128c9cd031718166ebf87d81d110acfd8f31786a03ad2acb3679ca ChangeLog 1232
+MISC metadata.xml 617 RMD160 1fd16fdfcf0ab68cdb7f5ced5885a13509e9e837 SHA1 da3036947bffa3ed2cb1457f1ae182081d02d29b SHA256 53db3801c66e710045451ef6ab679d93693fe7edf77c050c31e5b1a7bd998f3f
+MD5 2e8370ebc3f030902d6cd313d3ede91e metadata.xml 617
+RMD160 1fd16fdfcf0ab68cdb7f5ced5885a13509e9e837 metadata.xml 617
+SHA256 53db3801c66e710045451ef6ab679d93693fe7edf77c050c31e5b1a7bd998f3f metadata.xml 617
 MD5 50d788774b229a8b182ad47e44b7123d files/digest-njplot-20050109 67
-MD5 a1727bd238aff0cb1debdf9b11b21b5e metadata.xml 609
-MD5 1b3d074e93dd09a3b91af5f9e7301a7d njplot-20050109.ebuild 874
+RMD160 9cb5a95b518b4be24d3ade06c1bd293327504b4e files/digest-njplot-20050109 67
+SHA256 7305a9e5b9000706a93770abc213c05a104b74b82bad465e3c1e27921aaad5f3 files/digest-njplot-20050109 67
diff --git a/sci-biology/phylip/Manifest b/sci-biology/phylip/Manifest
index 80376da44566..228236ccdabf 100644
--- a/sci-biology/phylip/Manifest
+++ b/sci-biology/phylip/Manifest
@@ -1,5 +1,20 @@
-MD5 6e54bea80190af52d8f8c23917ab7b4b ChangeLog 4034
+AUX README.Gentoo 632 RMD160 5f406e5dedd4eb79b1a573e4c2822edb4718947e SHA1 e6dd19d0477dd9cb08df3813c69ec3f23eaeea11 SHA256 4a8b6651a77c58de82c72f34fbf41b386750bbc2b4c928fc2447b38e91824df7
 MD5 db251cf00973e0ed3fbf253071c8cec6 files/README.Gentoo 632
-MD5 d87091a1c48c794109dbfb88336d9068 files/digest-phylip-3.65-r1 64
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 5f406e5dedd4eb79b1a573e4c2822edb4718947e files/README.Gentoo 632
+SHA256 4a8b6651a77c58de82c72f34fbf41b386750bbc2b4c928fc2447b38e91824df7 files/README.Gentoo 632
+DIST phylip-3.65.tar.gz 1036976
+EBUILD phylip-3.65-r1.ebuild 1493 RMD160 d237fd812ffde06db5de210faa1f9c486d042c0f SHA1 3ec3cae86f2f22bd26988282ced86433a3be0590 SHA256 673fdc088cefef8ee33d35d7fa7bc20ecbb4ea934219fc4a32d4a4a2a2f0e569
 MD5 a341ee916cf5e0b6996ebcd49dd0e82f phylip-3.65-r1.ebuild 1493
+RMD160 d237fd812ffde06db5de210faa1f9c486d042c0f phylip-3.65-r1.ebuild 1493
+SHA256 673fdc088cefef8ee33d35d7fa7bc20ecbb4ea934219fc4a32d4a4a2a2f0e569 phylip-3.65-r1.ebuild 1493
+MISC ChangeLog 4034 RMD160 40d13b42d8a0593c89c2b2a6e2bc23a355f5754b SHA1 f0ed7d9141ba3b3f5a81e9446aef13a664eef8ab SHA256 170dde814b27352d4df8444646935857f3a1199a152d766aa36337a085137185
+MD5 6e54bea80190af52d8f8c23917ab7b4b ChangeLog 4034
+RMD160 40d13b42d8a0593c89c2b2a6e2bc23a355f5754b ChangeLog 4034
+SHA256 170dde814b27352d4df8444646935857f3a1199a152d766aa36337a085137185 ChangeLog 4034
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
+MD5 d87091a1c48c794109dbfb88336d9068 files/digest-phylip-3.65-r1 64
+RMD160 8dcc32d25dcea8e90a2cd039ab74fe55578760a6 files/digest-phylip-3.65-r1 64
+SHA256 e5fc150d12159464137d6e641c0232005dfef77a5d615f9b71e38284ca74dfd3 files/digest-phylip-3.65-r1 64
diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest
index 87241ae2da6e..bda3a7d0ed9f 100644
--- a/sci-biology/primer3/Manifest
+++ b/sci-biology/primer3/Manifest
@@ -1,14 +1,16 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
+DIST primer3_1.0.0.tar.gz 936696
+EBUILD primer3-1.0.0.ebuild 857 RMD160 cb888994924053585f2cae4035ec698cd16cbcf8 SHA1 f7a458a356863e3959a2066b50d7762dfe5462a2 SHA256 fbc301c102111474d225b2b02bf7073628cf1f6add8ac1e5ca26b305ee3799c8
+MD5 7500ac3b9e9024d94008b64c10cbc4be primer3-1.0.0.ebuild 857
+RMD160 cb888994924053585f2cae4035ec698cd16cbcf8 primer3-1.0.0.ebuild 857
+SHA256 fbc301c102111474d225b2b02bf7073628cf1f6add8ac1e5ca26b305ee3799c8 primer3-1.0.0.ebuild 857
+MISC ChangeLog 1878 RMD160 c34a6bc7bd27b2e73ca09056a1ee650b8b750d2f SHA1 4999f6570d29ebd642b661376f03962574ad0364 SHA256 d15d9de9844643f35b44e713bf1615b89d26461ce5dd58371928bd2f8ed2ef60
 MD5 0c23a9225bc253fcea98e4e46d63b24a ChangeLog 1878
+RMD160 c34a6bc7bd27b2e73ca09056a1ee650b8b750d2f ChangeLog 1878
+SHA256 d15d9de9844643f35b44e713bf1615b89d26461ce5dd58371928bd2f8ed2ef60 ChangeLog 1878
+MISC metadata.xml 721 RMD160 52ec41dfbf0405bbf4d209a6c940ed519ef90f09 SHA1 7c1c44b75d2cf8549959e2947509e58cd6c433ed SHA256 0add5594c686e3cf605ad8bba0ab855d92bbf75e019ef8b79c3ca802164244ca
+MD5 8cdd554f8d2dc15deccdb6c23a375bab metadata.xml 721
+RMD160 52ec41dfbf0405bbf4d209a6c940ed519ef90f09 metadata.xml 721
+SHA256 0add5594c686e3cf605ad8bba0ab855d92bbf75e019ef8b79c3ca802164244ca metadata.xml 721
 MD5 fc13dfb772f9bdd09bc788514faa4abe files/digest-primer3-1.0.0 65
-MD5 a3a36dab6877af45d7b14ec9edea31d9 metadata.xml 713
-MD5 7500ac3b9e9024d94008b64c10cbc4be primer3-1.0.0.ebuild 857
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.1 (GNU/Linux)
-
-iD8DBQFDS+P8wUpWvClEHQoRAhLDAJ9ye4HmLRAFOCdSjCpYaXHmSq12tACdEysj
-7YAS9PfPYIRHmbJ4Yf7tbME=
-=sw5C
------END PGP SIGNATURE-----
+RMD160 38324dde8c5401565b933b109570303ef3c67080 files/digest-primer3-1.0.0 65
+SHA256 db43eb22d12f09e99f9bb89478ad0f7adf4f022669510da7851f6bfdaf3dc163 files/digest-primer3-1.0.0 65
diff --git a/sci-biology/prints/Manifest b/sci-biology/prints/Manifest
index 9297af9f295d..e30cdd56dd74 100644
--- a/sci-biology/prints/Manifest
+++ b/sci-biology/prints/Manifest
@@ -1,4 +1,16 @@
+DIST prints-38.0.tar.bz2 25207529
+EBUILD prints-38.0.ebuild 1250 RMD160 ad583590bd06e6ad55546169b2793266935dead8 SHA1 6eaad29b4f14ba72e2481265a373e666c1c571b0 SHA256 6b717018ad76f6ee23393b9634146cb7d6e1f984b64ea4544d6a446e9066fcec
+MD5 85679cb75afce893ac9623a9e54289a8 prints-38.0.ebuild 1250
+RMD160 ad583590bd06e6ad55546169b2793266935dead8 prints-38.0.ebuild 1250
+SHA256 6b717018ad76f6ee23393b9634146cb7d6e1f984b64ea4544d6a446e9066fcec prints-38.0.ebuild 1250
+MISC ChangeLog 2280 RMD160 f76e876e8acdbc3028d0f2161f34aad4fbc08619 SHA1 2e8bae0e7da0ccfb06849d53ce132c7114692fd7 SHA256 da4b663a99b8728f292bd9a120e06ea2eed93d48a2783f53098f91e9cc6e2e68
 MD5 80558efb650c03eeb9b9c44d0b2099d9 ChangeLog 2280
+RMD160 f76e876e8acdbc3028d0f2161f34aad4fbc08619 ChangeLog 2280
+SHA256 da4b663a99b8728f292bd9a120e06ea2eed93d48a2783f53098f91e9cc6e2e68 ChangeLog 2280
+MISC metadata.xml 884 RMD160 4a24b1dfcab91b33221a29149524812ba4a6cba2 SHA1 978c65a7427a970cd0aae959a51fdf73b64d135b SHA256 e077ccb965b5b1a77c4ae9c3776d0d166c1da031ab6221f9623b7214039b44a1
+MD5 93a0d4d6b6868dcd5dff88d93ab519ba metadata.xml 884
+RMD160 4a24b1dfcab91b33221a29149524812ba4a6cba2 metadata.xml 884
+SHA256 e077ccb965b5b1a77c4ae9c3776d0d166c1da031ab6221f9623b7214039b44a1 metadata.xml 884
 MD5 aec0974e2bbc992669aec8865dae02fc files/digest-prints-38.0 66
-MD5 1ac1b9a7f4647c51e178fee97f2e8fa8 metadata.xml 876
-MD5 85679cb75afce893ac9623a9e54289a8 prints-38.0.ebuild 1250
+RMD160 23f1f49c785cda93d9e9ad22ac102038adb6365f files/digest-prints-38.0 66
+SHA256 6f7a4a047406874eb7eac647cffce01d0d432066458a126633d051596e2fdd7e files/digest-prints-38.0 66
diff --git a/sci-biology/probcons/Manifest b/sci-biology/probcons/Manifest
index 3208ec63f515..4f9daa504d1d 100644
--- a/sci-biology/probcons/Manifest
+++ b/sci-biology/probcons/Manifest
@@ -11,10 +11,10 @@ MISC ChangeLog 751 RMD160 ea6a03fbc7b99192df8a901af947e3e04e60fbe6 SHA1 36801bbf
 MD5 826e52520edd2d2dd9dc2d01d8c63d5f ChangeLog 751
 RMD160 ea6a03fbc7b99192df8a901af947e3e04e60fbe6 ChangeLog 751
 SHA256 41ea99dad1fff4f58552745f51970126b64fb1cffc75b54a3a56f5ee8d3fafeb ChangeLog 751
-MISC metadata.xml 248 RMD160 2a9b569fa64bc3db0e1164e89b612d23e99b8a96 SHA1 54746d4fbc728176fc1ffa9d38d34449dbe191f4 SHA256 803c22736a7dd04ff00470d60e120801a4b00821e734d790270eb9d46803ea86
-MD5 9b7f6ded82afdd3e3470083654f49745 metadata.xml 248
-RMD160 2a9b569fa64bc3db0e1164e89b612d23e99b8a96 metadata.xml 248
-SHA256 803c22736a7dd04ff00470d60e120801a4b00821e734d790270eb9d46803ea86 metadata.xml 248
+MISC metadata.xml 256 RMD160 7d3c707d8af4ab77e85a50612373e3e55c1bba9d SHA1 df9a21f9818659e6a14af34e15128b1683b8ccb7 SHA256 25e19d829dce6b1dc9988bf781c16099deba0d99c6e316a07f852c01fbd07af6
+MD5 de1e476ee40ca1aa1c0b268af045afde metadata.xml 256
+RMD160 7d3c707d8af4ab77e85a50612373e3e55c1bba9d metadata.xml 256
+SHA256 25e19d829dce6b1dc9988bf781c16099deba0d99c6e316a07f852c01fbd07af6 metadata.xml 256
 MD5 09ec4c47c33e46e812d1c8a09f00a91a files/digest-probcons-1.10 241
 RMD160 2d5910f5cca5eb03d3d6e7ca83954774d4080051 files/digest-probcons-1.10 241
 SHA256 6dcaf5dcb70c5db87bebfb7d61342cc1f56758d67fc2db674ae900bc685406ef files/digest-probcons-1.10 241
diff --git a/sci-biology/prosite/Manifest b/sci-biology/prosite/Manifest
index 76fdaf46eb1a..0813d9157755 100644
--- a/sci-biology/prosite/Manifest
+++ b/sci-biology/prosite/Manifest
@@ -22,10 +22,10 @@ MISC ChangeLog 12515 RMD160 45d6771a13176f6cf5d4cd065c42446491ad5a6d SHA1 177d58
 MD5 94e3bcc1794f3392d0d2b7f92113aa78 ChangeLog 12515
 RMD160 45d6771a13176f6cf5d4cd065c42446491ad5a6d ChangeLog 12515
 SHA256 fb7e53810985e70573ea22b3051ac98ec479d4f52ee99ea0d67b21f48c3046bd ChangeLog 12515
-MISC metadata.xml 810 RMD160 a0acc8bc90197c6e5e9814044b11a02f15e4c398 SHA1 6561f6d614b3e932fca2595377b40d3534f8d14e SHA256 432b03b079022cf13e6cdbcb2455fb10ac5a95a8b3f41c63f76212a5e7f67c65
-MD5 81b73af5f2f4778bea2dde0b55620129 metadata.xml 810
-RMD160 a0acc8bc90197c6e5e9814044b11a02f15e4c398 metadata.xml 810
-SHA256 432b03b079022cf13e6cdbcb2455fb10ac5a95a8b3f41c63f76212a5e7f67c65 metadata.xml 810
+MISC metadata.xml 818 RMD160 c06d1d70df7c3aa4798785b0cec9cb3b20e29009 SHA1 6e81d46dbe14beff674cca67bef555021224dcfd SHA256 f749fe556ef9340ad76f45fdf9544ec41b57ad13dae3a07364932a8ed67deb0b
+MD5 0191a7da3d4abe623c51f8b12e850701 metadata.xml 818
+RMD160 c06d1d70df7c3aa4798785b0cec9cb3b20e29009 metadata.xml 818
+SHA256 f749fe556ef9340ad76f45fdf9544ec41b57ad13dae3a07364932a8ed67deb0b metadata.xml 818
 MD5 a652d8b43037190415fe10e9282d838f files/digest-prosite-19.18 67
 RMD160 dbda98722b5c60df16cc2520ea5bd74bde7846eb files/digest-prosite-19.18 67
 SHA256 c08859bc6f93dd250ac7e19968c31467da734c4c408ae48d59b1b9c9a8a47603 files/digest-prosite-19.18 67
diff --git a/sci-biology/qrna/Manifest b/sci-biology/qrna/Manifest
index 3cfbd2e4f8d4..528cd53029f4 100644
--- a/sci-biology/qrna/Manifest
+++ b/sci-biology/qrna/Manifest
@@ -1,5 +1,20 @@
-MD5 2c0b93c86f4716018cb28bdb56f80856 ChangeLog 2004
+AUX 26qrna 30 RMD160 c6eb4ba1c559f2cce296915c3d166e134d54b7c4 SHA1 34b74c24f599e5387dd788ec2df1752b043b7b9a SHA256 218d879e5ef893cba33d8be7e0a6cba3f08c0a475781bbbb4c32bde6e79a32b7
 MD5 9127b0a4628230fc3bf2e201ca7519a9 files/26qrna 30
-MD5 12392df208522b818f5f2c72a7770a0e files/digest-qrna-2.0.3c 65
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 c6eb4ba1c559f2cce296915c3d166e134d54b7c4 files/26qrna 30
+SHA256 218d879e5ef893cba33d8be7e0a6cba3f08c0a475781bbbb4c32bde6e79a32b7 files/26qrna 30
+DIST qrna-2.0.3c.tar.bz2 6423705
+EBUILD qrna-2.0.3c.ebuild 1387 RMD160 b79532ced361b82667ab37b2599a9001e2932b66 SHA1 e2d8fc4cd7721bbd242de5e29494d0ac8d83ac11 SHA256 563302035a02c4f6181481fef074abbc3f0e954c17eaac825ae2c2a1c95ce172
 MD5 620917a1f1bec12a89992fc89d6fd50f qrna-2.0.3c.ebuild 1387
+RMD160 b79532ced361b82667ab37b2599a9001e2932b66 qrna-2.0.3c.ebuild 1387
+SHA256 563302035a02c4f6181481fef074abbc3f0e954c17eaac825ae2c2a1c95ce172 qrna-2.0.3c.ebuild 1387
+MISC ChangeLog 2004 RMD160 02662d9066c5445a728d67c15ccaccf44b434938 SHA1 05ac04d05adfbaced47449e63cb923c0f8bd9330 SHA256 f6b4a40124c510ee662d80722fd1c0ff97defa53e71bd6e387445426c46ee4b9
+MD5 2c0b93c86f4716018cb28bdb56f80856 ChangeLog 2004
+RMD160 02662d9066c5445a728d67c15ccaccf44b434938 ChangeLog 2004
+SHA256 f6b4a40124c510ee662d80722fd1c0ff97defa53e71bd6e387445426c46ee4b9 ChangeLog 2004
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
+MD5 12392df208522b818f5f2c72a7770a0e files/digest-qrna-2.0.3c 65
+RMD160 d6b728ee4a02a252c3071fe7bfc1eafbddd393fa files/digest-qrna-2.0.3c 65
+SHA256 315c07fd05f7fb1d6ad7595a881a849a8cb4755bc3d0cba91741cab95422657c files/digest-qrna-2.0.3c 65
diff --git a/sci-biology/readseq/Manifest b/sci-biology/readseq/Manifest
index 18d43ed0d2b1..082dcee6e719 100644
--- a/sci-biology/readseq/Manifest
+++ b/sci-biology/readseq/Manifest
@@ -1,4 +1,16 @@
+DIST readseq_1.orig.tar.gz 54557
+EBUILD readseq-19930201.ebuild 634 RMD160 7225e3652a0a7867927eb9aa4f935bba69b613e6 SHA1 df8bd6a6330847bfda0e3d23ef1f65049540d61d SHA256 e4ca0431afee1c3eb793be6d4a91787797e769261e49bfb3800514ef2f9cdde2
+MD5 7c63114bf2ae30437d4e78ffee6e13ea readseq-19930201.ebuild 634
+RMD160 7225e3652a0a7867927eb9aa4f935bba69b613e6 readseq-19930201.ebuild 634
+SHA256 e4ca0431afee1c3eb793be6d4a91787797e769261e49bfb3800514ef2f9cdde2 readseq-19930201.ebuild 634
+MISC ChangeLog 1128 RMD160 693f92c3bc115a595b63898f243592dd70d96c4d SHA1 ef23b66efa4c60210b7355e9c7dd6443372ade65 SHA256 0b87c835c4df8589d3c267b72eca8d9115107ce79093f1eeeffe6f67315e0824
 MD5 dbf95b28483f24857e5f1a6a18aebe2d ChangeLog 1128
+RMD160 693f92c3bc115a595b63898f243592dd70d96c4d ChangeLog 1128
+SHA256 0b87c835c4df8589d3c267b72eca8d9115107ce79093f1eeeffe6f67315e0824 ChangeLog 1128
+MISC metadata.xml 408 RMD160 5ce131c98012b12cbb1b8bf7fc11e56ce54067c5 SHA1 adb2f71c92a367dfa4ef78c775ed44803d331188 SHA256 9fbdb6518d4e841ab2f257bf953a287604f4c9dc00ec63556fa24d3664fad939
+MD5 53a2c41fad66ff75beecb75e65c2d3e4 metadata.xml 408
+RMD160 5ce131c98012b12cbb1b8bf7fc11e56ce54067c5 metadata.xml 408
+SHA256 9fbdb6518d4e841ab2f257bf953a287604f4c9dc00ec63556fa24d3664fad939 metadata.xml 408
 MD5 48eca35bf0c84eca8343d25e53977019 files/digest-readseq-19930201 65
-MD5 320f3ee1583712d75ffa816ff8fab041 metadata.xml 400
-MD5 7c63114bf2ae30437d4e78ffee6e13ea readseq-19930201.ebuild 634
+RMD160 0b18b360fa7a0f99f9b72e8368e62e9fd76206dc files/digest-readseq-19930201 65
+SHA256 25d763b74ee033a5ef884f34be95a1408f438b4825ff18da37c239d25d11f739 files/digest-readseq-19930201 65
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 10b3a845e6fa..0484483128ba 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -27,10 +27,10 @@ MISC ChangeLog 9119 RMD160 d436432268486a1f71ee888d6f3a36aee30991dc SHA1 743f2c6
 MD5 8badd8213cac923009d99553f4a9c81d ChangeLog 9119
 RMD160 d436432268486a1f71ee888d6f3a36aee30991dc ChangeLog 9119
 SHA256 0e8ffd288585a7c30657b72cdd5f02f5820bbe667f0636729240c3b7d8d71a7d ChangeLog 9119
-MISC metadata.xml 900 RMD160 6124f8e0fba32951daaba2f52d7f6f0f00233b2d SHA1 b1ff1b489c8db8427864057a89d02856a999e3b8 SHA256 e947dfc382096458c2183dc90fe7add203f8a6d86ccdfea668176451d58e2e7d
-MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
-RMD160 6124f8e0fba32951daaba2f52d7f6f0f00233b2d metadata.xml 900
-SHA256 e947dfc382096458c2183dc90fe7add203f8a6d86ccdfea668176451d58e2e7d metadata.xml 900
+MISC metadata.xml 908 RMD160 c4dc96997a4563391f74a006ccecebd04b4ea8a3 SHA1 32a6173a7ffa2900bb3ae75267684c3c4901ba1d SHA256 cbff81a8c24eb49cf76d5e9a61a86415d79c60e2e8a15594975273ba0d0f35af
+MD5 a463e92a7c6c7832dc446b533dd7b454 metadata.xml 908
+RMD160 c4dc96997a4563391f74a006ccecebd04b4ea8a3 metadata.xml 908
+SHA256 cbff81a8c24eb49cf76d5e9a61a86415d79c60e2e8a15594975273ba0d0f35af metadata.xml 908
 MD5 9b37c587b84cf914d6f9a9b616c493db files/digest-rebase-601-r1 63
 RMD160 a3685b540b325e1e6f26caf1843a07476771dd59 files/digest-rebase-601-r1 63
 SHA256 d2c68d331d68ca3431d7f39ae76cea9c6972766b24d45c68fc6cbe617d0a36e2 files/digest-rebase-601-r1 63
diff --git a/sci-biology/rnaview/Manifest b/sci-biology/rnaview/Manifest
index 4b380d99519f..9224b197273b 100644
--- a/sci-biology/rnaview/Manifest
+++ b/sci-biology/rnaview/Manifest
@@ -1,4 +1,16 @@
+DIST rnaview-20040713.tar.bz2 433916
+EBUILD rnaview-20040713.ebuild 955 RMD160 28042732a8e93eb0a70fd9d48970f5d0a619b572 SHA1 3c8a88b184c1289b73514ea1f9e620e81108acf9 SHA256 af5035ad6cc4c886e8f74d9bb1c836c846e7b3fdf7f3ec295dc05713984fcbb1
+MD5 2fd31b7ef88716bb8e4544c9bd465b39 rnaview-20040713.ebuild 955
+RMD160 28042732a8e93eb0a70fd9d48970f5d0a619b572 rnaview-20040713.ebuild 955
+SHA256 af5035ad6cc4c886e8f74d9bb1c836c846e7b3fdf7f3ec295dc05713984fcbb1 rnaview-20040713.ebuild 955
+MISC ChangeLog 999 RMD160 40516b331ce9334fc0645be7b03a15796e6ba077 SHA1 84e16ec8fae6f446c1c66d3eb359e989aa8547ef SHA256 fbfe411bdde81a2bea32daec2fdaaa78a103a6a93fc175781ea54f8187871978
 MD5 0940c8f05e654868b29ce0da8665777b ChangeLog 999
+RMD160 40516b331ce9334fc0645be7b03a15796e6ba077 ChangeLog 999
+SHA256 fbfe411bdde81a2bea32daec2fdaaa78a103a6a93fc175781ea54f8187871978 ChangeLog 999
+MISC metadata.xml 667 RMD160 11fcd562f94c1d54d2579ee0539691248cad62b5 SHA1 94a85867dc93661e920e097cbc952157cc8321d9 SHA256 9e1575b8a01c5f42c54ef0caf532e65f0c4aecd22c3e100221fc8bd590af7dfa
+MD5 c449b8c5bca4907d676faf5c2b191ef5 metadata.xml 667
+RMD160 11fcd562f94c1d54d2579ee0539691248cad62b5 metadata.xml 667
+SHA256 9e1575b8a01c5f42c54ef0caf532e65f0c4aecd22c3e100221fc8bd590af7dfa metadata.xml 667
 MD5 4b6b52afb691430043a6ed83b25a2835 files/digest-rnaview-20040713 69
-MD5 683a4745e6be4f5ae83f3250fcad1502 metadata.xml 659
-MD5 2fd31b7ef88716bb8e4544c9bd465b39 rnaview-20040713.ebuild 955
+RMD160 ec73d48b0a1f50ac2ef0967ba9986ebec615c639 files/digest-rnaview-20040713 69
+SHA256 f6a1b861cb405ee5ac4ab8207ffa1471a26a32b8cd98830d552d223ed9d76972 files/digest-rnaview-20040713 69
diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
index 44096a1570bb..d38de87746bd 100644
--- a/sci-biology/seaview/Manifest
+++ b/sci-biology/seaview/Manifest
@@ -1,6 +1,26 @@
+DIST seaview-20041220.tar.bz2 115192
+DIST seaview-20050713.tar.bz2 119476
+DIST seaview-20060213.tar.bz2 114995 RMD160 c3409b5e06f15e983db4912812381ee5d5894ea9 SHA256 be058f53f07cec46978f10ddad8794bbe79762cf089d18b5cbe7cb6ed15c54fc
+EBUILD seaview-20041220.ebuild 882 RMD160 76a5d3e970c20d034ac831a7b01c7665e4450bc8 SHA1 e5155acaa8b728a9599557dff1a3d772d3acdfba SHA256 bfd3296f1250f436767fe8ab774d9e4de08febd201e61fe7515f120fff98fc3d
+MD5 680ece30974abad6f113a0f92824ea23 seaview-20041220.ebuild 882
+RMD160 76a5d3e970c20d034ac831a7b01c7665e4450bc8 seaview-20041220.ebuild 882
+SHA256 bfd3296f1250f436767fe8ab774d9e4de08febd201e61fe7515f120fff98fc3d seaview-20041220.ebuild 882
+EBUILD seaview-20050713.ebuild 911 RMD160 c4a662fb8b4f13bd7e9bccfa0bd65e56792a5bdc SHA1 03acdf7cce5a7b09d54a39a606f280f04892736c SHA256 696f69974a42e99a1f60080bbac4d19f80d94034fc29b47a026c4f77c8b1a521
+MD5 ad474bbfb4b096697e33e22e150fd489 seaview-20050713.ebuild 911
+RMD160 c4a662fb8b4f13bd7e9bccfa0bd65e56792a5bdc seaview-20050713.ebuild 911
+SHA256 696f69974a42e99a1f60080bbac4d19f80d94034fc29b47a026c4f77c8b1a521 seaview-20050713.ebuild 911
+EBUILD seaview-20060213.ebuild 912 RMD160 c9f5472b0b098ebcd7a4984fbb90c00eb886478e SHA1 40b137e42364fbaec51d38d87b7fb874aae05a1f SHA256 5a60af1cf1603a3054362ee031bb6844b49a7af9a5a0d2e52f4140c547055af9
+MD5 bb7e5c881522e18af3c3376bed076d10 seaview-20060213.ebuild 912
+RMD160 c9f5472b0b098ebcd7a4984fbb90c00eb886478e seaview-20060213.ebuild 912
+SHA256 5a60af1cf1603a3054362ee031bb6844b49a7af9a5a0d2e52f4140c547055af9 seaview-20060213.ebuild 912
+MISC ChangeLog 1976 RMD160 fd061fc389e260c4deebb91bd726b61a02290406 SHA1 47ff2e37b1f6d5624cc106db406467fdc92e999c SHA256 2c57e828bab77e0ac417b7c18f73f5cc59255885f3cac38d753af781081c6098
 MD5 361b20fd81d45294aa70693a60901993 ChangeLog 1976
 RMD160 fd061fc389e260c4deebb91bd726b61a02290406 ChangeLog 1976
 SHA256 2c57e828bab77e0ac417b7c18f73f5cc59255885f3cac38d753af781081c6098 ChangeLog 1976
+MISC metadata.xml 622 RMD160 971008c946d3c492a86c946d8be5ed7881981600 SHA1 4a772f6c65f56de1a01eb770bc3b00998e8fc793 SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529
+MD5 62b43c9f7320b7c9c27eac02b2644cd5 metadata.xml 622
+RMD160 971008c946d3c492a86c946d8be5ed7881981600 metadata.xml 622
+SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529 metadata.xml 622
 MD5 d13f3abed50e95fdd7a2ced7815ebdc3 files/digest-seaview-20041220 69
 RMD160 572bdb6fce1d9265b330e23fe16b2351dd1aca73 files/digest-seaview-20041220 69
 SHA256 55c596b8feb348ae50763670f4e7a341f0f4d235a01f5bc0fc208e71a927f23c files/digest-seaview-20041220 69
@@ -10,15 +30,3 @@ SHA256 50541ce3f1c006c1c6f25483381cbedd521d7e568105708666eab1a2f935a61d files/di
 MD5 12f7be8bda68958f3fd458149b5cdb6a files/digest-seaview-20060213 253
 RMD160 2c5874f5e8f1e778044c4f1c462ae158c9aaaf25 files/digest-seaview-20060213 253
 SHA256 b91aecb8cac59c15a14b1e5f925c8b065f3a929f636adbea74e5331fbe4153e5 files/digest-seaview-20060213 253
-MD5 7b87a6c33de5295e356b67218bd4fba9 metadata.xml 614
-RMD160 2d85f3408f8dc02063c111c5e41a149f637ef6b0 metadata.xml 614
-SHA256 ad0460ad24070f0337367a8dd91c16959e8f8ad3b739121c9772a25ef78ea4bf metadata.xml 614
-MD5 680ece30974abad6f113a0f92824ea23 seaview-20041220.ebuild 882
-RMD160 76a5d3e970c20d034ac831a7b01c7665e4450bc8 seaview-20041220.ebuild 882
-SHA256 bfd3296f1250f436767fe8ab774d9e4de08febd201e61fe7515f120fff98fc3d seaview-20041220.ebuild 882
-MD5 ad474bbfb4b096697e33e22e150fd489 seaview-20050713.ebuild 911
-RMD160 c4a662fb8b4f13bd7e9bccfa0bd65e56792a5bdc seaview-20050713.ebuild 911
-SHA256 696f69974a42e99a1f60080bbac4d19f80d94034fc29b47a026c4f77c8b1a521 seaview-20050713.ebuild 911
-MD5 bb7e5c881522e18af3c3376bed076d10 seaview-20060213.ebuild 912
-RMD160 c9f5472b0b098ebcd7a4984fbb90c00eb886478e seaview-20060213.ebuild 912
-SHA256 5a60af1cf1603a3054362ee031bb6844b49a7af9a5a0d2e52f4140c547055af9 seaview-20060213.ebuild 912
diff --git a/sci-biology/sim4/Manifest b/sci-biology/sim4/Manifest
index b30252713e06..e05e8c06e90d 100644
--- a/sci-biology/sim4/Manifest
+++ b/sci-biology/sim4/Manifest
@@ -1,4 +1,16 @@
+DIST sim4.tar.gz 60814
+EBUILD sim4-20030921.ebuild 603 RMD160 8b4e1e06ac8e77de5f566ff680f2aed3fb19afa4 SHA1 fda8dc45e575d4116ed51065164e4097b87ae093 SHA256 7c83f55613b796073c5a179f8098ce998ba8532b26bce1d0003984b2290f3a47
+MD5 62568dc0e367e6f5e9927232b54a8617 sim4-20030921.ebuild 603
+RMD160 8b4e1e06ac8e77de5f566ff680f2aed3fb19afa4 sim4-20030921.ebuild 603
+SHA256 7c83f55613b796073c5a179f8098ce998ba8532b26bce1d0003984b2290f3a47 sim4-20030921.ebuild 603
+MISC ChangeLog 892 RMD160 054b572db32f8f24ece2dbb470bafb810bb80c6b SHA1 eeaa59e076f5bb3e73a003081068fe58162549e8 SHA256 a51a27bf68e54fa9b7e128798739ae1913a7ad1ed04f627efd5dcc5bbda72af4
 MD5 e5af400282bc202d7b5ba79673e6e782 ChangeLog 892
+RMD160 054b572db32f8f24ece2dbb470bafb810bb80c6b ChangeLog 892
+SHA256 a51a27bf68e54fa9b7e128798739ae1913a7ad1ed04f627efd5dcc5bbda72af4 ChangeLog 892
+MISC metadata.xml 1229 RMD160 f3850d5b343259cf4e394ee227e18d26ef641417 SHA1 afbc6062c3ccacb6010fc5af5b99abe969948513 SHA256 b423d585f423fd21d1182d96bd12409d52a05c4c8939f43609a64453ef4ebb20
+MD5 dfe758f8621b9301f40ccce03ae5b87d metadata.xml 1229
+RMD160 f3850d5b343259cf4e394ee227e18d26ef641417 metadata.xml 1229
+SHA256 b423d585f423fd21d1182d96bd12409d52a05c4c8939f43609a64453ef4ebb20 metadata.xml 1229
 MD5 743d4ddb73b01bef0fb3408b4b7b129f files/digest-sim4-20030921 55
-MD5 50eefd281ea304818febea2f397775ed metadata.xml 1221
-MD5 62568dc0e367e6f5e9927232b54a8617 sim4-20030921.ebuild 603
+RMD160 c8021b1c509edcd73ad6c156d539bf8c350b98ca files/digest-sim4-20030921 55
+SHA256 338fc87d1360f30521296adbe9b36ffbc8ac2aa9340c281f7599bb3bbb12d38f files/digest-sim4-20030921 55
diff --git a/sci-biology/staden/Manifest b/sci-biology/staden/Manifest
index 90f5894f6bfb..fe31845faf69 100644
--- a/sci-biology/staden/Manifest
+++ b/sci-biology/staden/Manifest
@@ -1,15 +1,64 @@
-MD5 6cc8fe615abb91e0020de247147531d2 ChangeLog 5368
-MD5 e3ce8053514641a26df3ca33f2962e55 files/digest-staden-1.5.3-r1 338
+AUX staden-1.5.3-env 163 RMD160 c082adab8664ec43cff9a46c0868649b5191ffb3 SHA1 8ce08d43869d29b096b6d49d8562ba3ca7de1870 SHA256 e51a477dbf630e078a74c4145a79cdc40edd6e9749e3e9175f060bba37de5553
 MD5 10dd81dc9b5fb15600bf8b1d4f7b4c0b files/staden-1.5.3-env 163
+RMD160 c082adab8664ec43cff9a46c0868649b5191ffb3 files/staden-1.5.3-env 163
+SHA256 e51a477dbf630e078a74c4145a79cdc40edd6e9749e3e9175f060bba37de5553 files/staden-1.5.3-env 163
+AUX staden-1.5.3-getopt.patch 367 RMD160 51d5abea8ddf6715526db3f2566de8016c575770 SHA1 5b8d74d92b968138bfaef77ee2dbc38267690ade SHA256 bccb40cb506f15d99347d3fcf130b3044e7efc1855a13489d2d00206d1ac3636
 MD5 daf40c222b80ffc48d9a2ac2544ab631 files/staden-1.5.3-getopt.patch 367
+RMD160 51d5abea8ddf6715526db3f2566de8016c575770 files/staden-1.5.3-getopt.patch 367
+SHA256 bccb40cb506f15d99347d3fcf130b3044e7efc1855a13489d2d00206d1ac3636 files/staden-1.5.3-getopt.patch 367
+AUX staden-1.5.3-iwidgetsrc.new 445 RMD160 4cc07cdda2cc30bfa5b39e549f0ac4c343474c42 SHA1 5a9660e772fc18af5332c09efaa4d1865f9d957e SHA256 7f61682fe0365dcfcaa0c5340f1d4876140bc754ad6ead011d08d07ace38943c
 MD5 bd82265e893628c1b46329d77e1f11d8 files/staden-1.5.3-iwidgetsrc.new 445
+RMD160 4cc07cdda2cc30bfa5b39e549f0ac4c343474c42 files/staden-1.5.3-iwidgetsrc.new 445
+SHA256 7f61682fe0365dcfcaa0c5340f1d4876140bc754ad6ead011d08d07ace38943c files/staden-1.5.3-iwidgetsrc.new 445
+AUX staden-1.5.3-mutlib-gcc-3.4.patch 5460 RMD160 6b46bb167f689cc604f386dfe66845de92b487c5 SHA1 b50e7faba395466de8ce3fadc506f993ae66308b SHA256 a6bb83d70106b515d9a1f01640670454df2fbec938ad79d58c63b8e5ea795371
 MD5 82a31125cf882d95d15578040add39c3 files/staden-1.5.3-mutlib-gcc-3.4.patch 5460
+RMD160 6b46bb167f689cc604f386dfe66845de92b487c5 files/staden-1.5.3-mutlib-gcc-3.4.patch 5460
+SHA256 a6bb83d70106b515d9a1f01640670454df2fbec938ad79d58c63b8e5ea795371 files/staden-1.5.3-mutlib-gcc-3.4.patch 5460
+AUX staden-1.5.3-mutscan.patch 330 RMD160 4e25465dea57ec108810469e5c5b177a07a2bc07 SHA1 82e0a63594a167b55b5a717ffd6ffc426bdc0f71 SHA256 ea442d4b8ff809f633f8af2b6f16a157bc4c12cdd859463b878064ec4ed418e7
 MD5 2d495d394e31807f84859f854024b3fc files/staden-1.5.3-mutscan.patch 330
+RMD160 4e25465dea57ec108810469e5c5b177a07a2bc07 files/staden-1.5.3-mutscan.patch 330
+SHA256 ea442d4b8ff809f633f8af2b6f16a157bc4c12cdd859463b878064ec4ed418e7 files/staden-1.5.3-mutscan.patch 330
+AUX staden-1.5.3-prefinish.patch 362 RMD160 8ef43a7902e512c2491d48121e12159d23f0f4af SHA1 f80cf538f07597004e948ded03489f9062aeb466 SHA256 37fe4a6fcb5f1a0d52105429f88cb646cebb7580ac9b80499c6eb154eb7dba13
 MD5 9f05ecafdd38d17d8dd40ff581dda1a2 files/staden-1.5.3-prefinish.patch 362
+RMD160 8ef43a7902e512c2491d48121e12159d23f0f4af files/staden-1.5.3-prefinish.patch 362
+SHA256 37fe4a6fcb5f1a0d52105429f88cb646cebb7580ac9b80499c6eb154eb7dba13 files/staden-1.5.3-prefinish.patch 362
+AUX staden-1.5.3-staden_help.new 159 RMD160 4b2b9babf4b4156029496b655952050ec5372c96 SHA1 aaf1b291a6ffce474c6a2cea723b014f421ed8ed SHA256 c93c500af0b226ceafa28c42a7f6cf1b18c12ec225748094fdd5c4f5b90cb33a
 MD5 1026629ee4b47aea8043dd7f35eb2ffe files/staden-1.5.3-staden_help.new 159
+RMD160 4b2b9babf4b4156029496b655952050ec5372c96 files/staden-1.5.3-staden_help.new 159
+SHA256 c93c500af0b226ceafa28c42a7f6cf1b18c12ec225748094fdd5c4f5b90cb33a files/staden-1.5.3-staden_help.new 159
+AUX staden-1.5.3-text_utils.patch 478 RMD160 bdfc7b73e3d39117e1fbfa998a104a451bfbc34e SHA1 2b530ccfd91897e823d8c6087c42373c047a7890 SHA256 74498bad66c411019d053bd1b5574bc3acbacdece1f7af604373471aa6a41b33
 MD5 6ce4d77a48d0377a1ada09f1990fb2af files/staden-1.5.3-text_utils.patch 478
+RMD160 bdfc7b73e3d39117e1fbfa998a104a451bfbc34e files/staden-1.5.3-text_utils.patch 478
+SHA256 74498bad66c411019d053bd1b5574bc3acbacdece1f7af604373471aa6a41b33 files/staden-1.5.3-text_utils.patch 478
+AUX staden-1.5.3-tk_utils.patch 787 RMD160 660663cad027e119d9321a272d744835bc20e68b SHA1 40a9cf706253672c80ec92d05cfaba4f6f8328ec SHA256 58df936665d54d1eaa8176970c84e5fdd0d1f5a203ce1d4b8123fea500f18f27
 MD5 7e0b4d0414191e2d1e00c65c16f3c377 files/staden-1.5.3-tk_utils.patch 787
+RMD160 660663cad027e119d9321a272d744835bc20e68b files/staden-1.5.3-tk_utils.patch 787
+SHA256 58df936665d54d1eaa8176970c84e5fdd0d1f5a203ce1d4b8123fea500f18f27 files/staden-1.5.3-tk_utils.patch 787
+AUX staden-1.5.3-top.patch 230 RMD160 8deb4862c24b938489bd1b682fa2711fb08e58b5 SHA1 ba9edb17d22635fb2d2d1130303ca30ffc5737c8 SHA256 b9d4093d220cabd71a20f650b00907554f646d9e5271dc1bd6bb4655da5a56b7
 MD5 0857e0bf79953bfa46b1224f6218701a files/staden-1.5.3-top.patch 230
+RMD160 8deb4862c24b938489bd1b682fa2711fb08e58b5 files/staden-1.5.3-top.patch 230
+SHA256 b9d4093d220cabd71a20f650b00907554f646d9e5271dc1bd6bb4655da5a56b7 files/staden-1.5.3-top.patch 230
+AUX staden-1.5.3-tracediff.patch 334 RMD160 9c3fcdd725e9e5f12dcb24626da3de28cde472b5 SHA1 c3bcd4d10be6a546dcaa21935258a71defb669f9 SHA256 09997f7e636f41e318347400936f8a07501e99aab0601e8ab46281bbace58d5d
 MD5 690ec96f38a668c6cda216d7a3960ecf files/staden-1.5.3-tracediff.patch 334
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 9c3fcdd725e9e5f12dcb24626da3de28cde472b5 files/staden-1.5.3-tracediff.patch 334
+SHA256 09997f7e636f41e318347400936f8a07501e99aab0601e8ab46281bbace58d5d files/staden-1.5.3-tracediff.patch 334
+DIST course-1.1.tar.gz 5271133
+DIST staden-1.4.1-missing-doc.tar.bz2 63825
+DIST staden-src-1-5-3.tar.gz 19670216
+DIST tcl8.4.6-src.tar.gz 3448711
+DIST tk8.4.6-src.tar.gz 3230760
+EBUILD staden-1.5.3-r1.ebuild 9559 RMD160 cc42ec408ca0ce8a2d56d5234970368f878c1d51 SHA1 1eb1e3afc50a9631e07b85fdfcbac16ef102db88 SHA256 5239ff23b6ba235071771e268c46fc36ad06efbdb6b20e2ace42846bc1b4d402
 MD5 08c238bbea3b668fa03c0b468d3131bf staden-1.5.3-r1.ebuild 9559
+RMD160 cc42ec408ca0ce8a2d56d5234970368f878c1d51 staden-1.5.3-r1.ebuild 9559
+SHA256 5239ff23b6ba235071771e268c46fc36ad06efbdb6b20e2ace42846bc1b4d402 staden-1.5.3-r1.ebuild 9559
+MISC ChangeLog 5368 RMD160 3a342d46b422cbc3885aaab78b953b62188e6eed SHA1 313db92c54d5bc65b8733a71f443a0732acd0143 SHA256 d2211c9cbb9ec5735249dea592bacf11177325ebf683e9d43c3df0ee9a71c3fa
+MD5 6cc8fe615abb91e0020de247147531d2 ChangeLog 5368
+RMD160 3a342d46b422cbc3885aaab78b953b62188e6eed ChangeLog 5368
+SHA256 d2211c9cbb9ec5735249dea592bacf11177325ebf683e9d43c3df0ee9a71c3fa ChangeLog 5368
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
+MD5 e3ce8053514641a26df3ca33f2962e55 files/digest-staden-1.5.3-r1 338
+RMD160 3cea49b9aa5410391dbc336bcc0d391d7e615c19 files/digest-staden-1.5.3-r1 338
+SHA256 46e95a2d368c2493d2751ffdcbf7b86acb4497ac0de5ddf595ab0f1e1c098dd8 files/digest-staden-1.5.3-r1 338
diff --git a/sci-biology/t-coffee/Manifest b/sci-biology/t-coffee/Manifest
index f43699d213cc..1480a693549b 100644
--- a/sci-biology/t-coffee/Manifest
+++ b/sci-biology/t-coffee/Manifest
@@ -7,10 +7,10 @@ MISC ChangeLog 2323 RMD160 3972e81936e8fac3f641b25ec498b89d064caf2f SHA1 da9017f
 MD5 b87b63b0282c597360ef65b77fca3ba7 ChangeLog 2323
 RMD160 3972e81936e8fac3f641b25ec498b89d064caf2f ChangeLog 2323
 SHA256 3436d74135e19d4fbb5b764cd054ee9d054b54d8ef1579a491fda91f619f597a ChangeLog 2323
-MISC metadata.xml 755 RMD160 ef787b368ef20594ac1af412ab7ded9bd853c90d SHA1 30204018d33a4cd15e6f32eb47ac10cc9f70f9c3 SHA256 c8669c3b6b58e9abbb36358b6577c76d595fab96fed1410c41694cff7cbe780a
-MD5 0bbfd32ca9864625c55ab6460dbbd963 metadata.xml 755
-RMD160 ef787b368ef20594ac1af412ab7ded9bd853c90d metadata.xml 755
-SHA256 c8669c3b6b58e9abbb36358b6577c76d595fab96fed1410c41694cff7cbe780a metadata.xml 755
+MISC metadata.xml 763 RMD160 1163b25c489923e806ccf77dd3b4b5a486da0c28 SHA1 9a6b86bfa165e9b7c0a9b8631990bbfb727fe410 SHA256 8ff6c199eb54e1a49903130ed1aebbe32a0c0b1698aaec2044530c27533270a2
+MD5 d5530b7c0b5defb31d0e1ad80fad02d6 metadata.xml 763
+RMD160 1163b25c489923e806ccf77dd3b4b5a486da0c28 metadata.xml 763
+SHA256 8ff6c199eb54e1a49903130ed1aebbe32a0c0b1698aaec2044530c27533270a2 metadata.xml 763
 MD5 8663d9c02294b9417b3c82f0e9d3a570 files/digest-t-coffee-3.84 307
 RMD160 e234918666e5de1a15e6a0ccb831d7597608a08a files/digest-t-coffee-3.84 307
 SHA256 6717825503db3a5cc4d64a2506dc81d25498dcc2625f37eb64c8df50c25462f9 files/digest-t-coffee-3.84 307
diff --git a/sci-biology/transfac/Manifest b/sci-biology/transfac/Manifest
index 05ad715a2e21..1678586efbae 100644
--- a/sci-biology/transfac/Manifest
+++ b/sci-biology/transfac/Manifest
@@ -1,4 +1,16 @@
+DIST transfac32.tar.Z 3346266
+EBUILD transfac-3.2.ebuild 1075 RMD160 3cd879627d1def4bba15aa532107bae6a5837938 SHA1 8c88695d1d47030cf86dad49651c1d311fb72072 SHA256 7cf9cedcda1f66ffa498fc8ef6f86467699b32fd4a62fabe78c6c5911050f95f
+MD5 125593abeaec3c0f24c16fcdfe4fdbda transfac-3.2.ebuild 1075
+RMD160 3cd879627d1def4bba15aa532107bae6a5837938 transfac-3.2.ebuild 1075
+SHA256 7cf9cedcda1f66ffa498fc8ef6f86467699b32fd4a62fabe78c6c5911050f95f transfac-3.2.ebuild 1075
+MISC ChangeLog 1685 RMD160 3de67ad52ee7f20f4bb17ac166db1babcf63bb6a SHA1 a2a7afb3b04a072bd3c3aa89ab55b4a82c355e0c SHA256 f86e8dca8194ef34b81bb30178b4fd24c79bdbdef20fd37467f6c885cc8bcbe1
 MD5 598458a76a801b12813f7b0e2f5b6352 ChangeLog 1685
+RMD160 3de67ad52ee7f20f4bb17ac166db1babcf63bb6a ChangeLog 1685
+SHA256 f86e8dca8194ef34b81bb30178b4fd24c79bdbdef20fd37467f6c885cc8bcbe1 ChangeLog 1685
+MISC metadata.xml 697 RMD160 cfe318ef46ec681df10cadc9f64f8c33a0f6853f SHA1 e08555696ca085bc2996b901f82b99fead6ef6a8 SHA256 76838587f96cdd48b55e0b290fdf46bfb16fa98dfc54e798c854180b1864a9e4
+MD5 3e69272d288453c488a2ac6a6b0f8fd1 metadata.xml 697
+RMD160 cfe318ef46ec681df10cadc9f64f8c33a0f6853f metadata.xml 697
+SHA256 76838587f96cdd48b55e0b290fdf46bfb16fa98dfc54e798c854180b1864a9e4 metadata.xml 697
 MD5 e3812a0e0572b70737cef505b921a8fc files/digest-transfac-3.2 62
-MD5 504b628559ecce77f74357602454a570 metadata.xml 689
-MD5 125593abeaec3c0f24c16fcdfe4fdbda transfac-3.2.ebuild 1075
+RMD160 0f18c808405a3919418623f1a34b9ec6ecb7a317 files/digest-transfac-3.2 62
+SHA256 ba8706bc84596e8b669840fe4bd66188a04fd4ffae226628c7534d5c40102bf6 files/digest-transfac-3.2 62
diff --git a/sci-biology/tree-puzzle/Manifest b/sci-biology/tree-puzzle/Manifest
index 43fb8bbff1b9..35b28e86b084 100644
--- a/sci-biology/tree-puzzle/Manifest
+++ b/sci-biology/tree-puzzle/Manifest
@@ -1,6 +1,24 @@
+DIST tree-puzzle-5.1.tar.gz 612216
+DIST tree-puzzle-5.2.tar.gz 875142
+EBUILD tree-puzzle-5.1.ebuild 958 RMD160 2c16eb66ab79c13501b40b54b80ef0b5bd983b39 SHA1 179d92ae963888afaeaf5e18f2bdfa50429f5749 SHA256 087f6f23129286390516bb7296a154a407c0ffe7e64f1954b0a9c295f796a93d
+MD5 d1afc9985cfeb342e821f3ee18565431 tree-puzzle-5.1.ebuild 958
+RMD160 2c16eb66ab79c13501b40b54b80ef0b5bd983b39 tree-puzzle-5.1.ebuild 958
+SHA256 087f6f23129286390516bb7296a154a407c0ffe7e64f1954b0a9c295f796a93d tree-puzzle-5.1.ebuild 958
+EBUILD tree-puzzle-5.2.ebuild 1399 RMD160 666fc3971cc0e62546331fcf0033ffc7f0dd2e2a SHA1 9b66ba57498139d29805c0f0b7c00fb3e2851f72 SHA256 66ed4754ebbcede60b8742c65c8fd5a422f7df0baed6bd14c6e6316a17dfe565
+MD5 a14573d64d84ba2acbdd9b320f17f7f8 tree-puzzle-5.2.ebuild 1399
+RMD160 666fc3971cc0e62546331fcf0033ffc7f0dd2e2a tree-puzzle-5.2.ebuild 1399
+SHA256 66ed4754ebbcede60b8742c65c8fd5a422f7df0baed6bd14c6e6316a17dfe565 tree-puzzle-5.2.ebuild 1399
+MISC ChangeLog 2218 RMD160 4be035f53341e8e60b637fe360e6bf13370bec51 SHA1 6ac5911442e0669d16efac48e8bf95acbf208f10 SHA256 225f03e4056d4b3273ba89b6ae54dcae8c088cd587f377cf98b44f645845b4e1
 MD5 288c312f5b2d4a958c9d1b45012dfbdd ChangeLog 2218
+RMD160 4be035f53341e8e60b637fe360e6bf13370bec51 ChangeLog 2218
+SHA256 225f03e4056d4b3273ba89b6ae54dcae8c088cd587f377cf98b44f645845b4e1 ChangeLog 2218
+MISC metadata.xml 1556 RMD160 e152b964d0efb69cca645cb728e56e5cc95ffe16 SHA1 930142f682706a5d8bb8c2b3ee65d25e2e2c346b SHA256 678aaf64be3cfdd3ad9c4c3758c09d754696682b04b6b60fc643c55deb402c9c
+MD5 100f2d2d88cc0554dbc5d0d7bd1ecf7f metadata.xml 1556
+RMD160 e152b964d0efb69cca645cb728e56e5cc95ffe16 metadata.xml 1556
+SHA256 678aaf64be3cfdd3ad9c4c3758c09d754696682b04b6b60fc643c55deb402c9c metadata.xml 1556
 MD5 432840347efef142f52c23eb03c21e89 files/digest-tree-puzzle-5.1 67
+RMD160 0d4b798592b4d059ced26a82accc8b0aab26fc38 files/digest-tree-puzzle-5.1 67
+SHA256 9e32ec19db7e83ed4b863d39b4bfdbf57a57dc558ae7e864714a36906d993f10 files/digest-tree-puzzle-5.1 67
 MD5 91165e7d2ebcd4a70e55b5e8bea21e43 files/digest-tree-puzzle-5.2 67
-MD5 d034503a05e54849a282d5baca880756 metadata.xml 1548
-MD5 d1afc9985cfeb342e821f3ee18565431 tree-puzzle-5.1.ebuild 958
-MD5 a14573d64d84ba2acbdd9b320f17f7f8 tree-puzzle-5.2.ebuild 1399
+RMD160 0d53c7327a47c016349780b0fab99cf149ce893f files/digest-tree-puzzle-5.2 67
+SHA256 8f04188245031b502803c2b047f1b57cec050764cff9c1a60d5fece1937aff1a files/digest-tree-puzzle-5.2 67
diff --git a/sci-biology/treeviewx/Manifest b/sci-biology/treeviewx/Manifest
index 9cea515e1f1f..0b16b6592367 100644
--- a/sci-biology/treeviewx/Manifest
+++ b/sci-biology/treeviewx/Manifest
@@ -1,18 +1,24 @@
-MD5 97029ba597270ee7b4b162caac02311a ChangeLog 2546
-RMD160 2d5a0d9624c53daaa0233c68cabc3ad9c42623d4 ChangeLog 2546
-SHA256 4797d58d11a682d71ad1dbbfcac4acbc03dad8cdbfb84d25751a67d965f8d04f ChangeLog 2546
-MD5 a05c75ec566a1e23526e5df960797f69 files/digest-treeviewx-0.5.1 60
-RMD160 f295ca875a3524ed7119503465be0628d074ded6 files/digest-treeviewx-0.5.1 60
-SHA256 242cc3988dc7053a5b608b3d6e8fbf7719b81faab9a70b21a33a9eccea91f94b files/digest-treeviewx-0.5.1 60
+AUX treeviewx-gcc-3.4.patch 1993 RMD160 1f9bc8764baee71be7490ac80744ae201f22ea1b SHA1 60fe792aea3f8be41ab0efc453dd52d31ea3f783 SHA256 8a6449a278d0e24b7430a327e0e8505fe590b4b6c4d57318534bac72f15457bc
 MD5 c208b90b136cb1d6147844b45c943663 files/treeviewx-gcc-3.4.patch 1993
 RMD160 1f9bc8764baee71be7490ac80744ae201f22ea1b files/treeviewx-gcc-3.4.patch 1993
 SHA256 8a6449a278d0e24b7430a327e0e8505fe590b4b6c4d57318534bac72f15457bc files/treeviewx-gcc-3.4.patch 1993
+AUX treeviewx-wxt.patch 1854 RMD160 9531ffb260bff7d7c26023558db07b7773c790b7 SHA1 e3d56f36477a0b0b7c4d5f3a08cd5f8b0a698f09 SHA256 2881ec0a4644434320d284a4024f18cba765245de99fa7b50c3cc20ab7a37eb4
 MD5 1d7d72d2a9d090385ef5e576f587ef6f files/treeviewx-wxt.patch 1854
 RMD160 9531ffb260bff7d7c26023558db07b7773c790b7 files/treeviewx-wxt.patch 1854
 SHA256 2881ec0a4644434320d284a4024f18cba765245de99fa7b50c3cc20ab7a37eb4 files/treeviewx-wxt.patch 1854
-MD5 4a02a793e1530b66640221d52ab8a8ab metadata.xml 523
-RMD160 1173da23bd81c8d513b7725854019fe01b5abd5c metadata.xml 523
-SHA256 1a9a282d997526b153e468a9158d636a5dd3bad6aabc3826da94a5eda2d1db06 metadata.xml 523
+DIST tv-0.5.1.tar.gz 426745
+EBUILD treeviewx-0.5.1.ebuild 1130 RMD160 9e9151f3294911c2f87c9c571068b0eececbaca5 SHA1 a5572303e6b2ee56fe2fd56762727086073bd4d0 SHA256 d6c0dba5e57316f7d4247a6152daa23c2c269ee9b5bf4ad98fbee700d2910f9f
 MD5 6b2b7710b5d8ae6b1b4cfcb4b84e6cd1 treeviewx-0.5.1.ebuild 1130
 RMD160 9e9151f3294911c2f87c9c571068b0eececbaca5 treeviewx-0.5.1.ebuild 1130
 SHA256 d6c0dba5e57316f7d4247a6152daa23c2c269ee9b5bf4ad98fbee700d2910f9f treeviewx-0.5.1.ebuild 1130
+MISC ChangeLog 2546 RMD160 2d5a0d9624c53daaa0233c68cabc3ad9c42623d4 SHA1 5df0ae357dec2ff33a89e86e299e3537dd8a2128 SHA256 4797d58d11a682d71ad1dbbfcac4acbc03dad8cdbfb84d25751a67d965f8d04f
+MD5 97029ba597270ee7b4b162caac02311a ChangeLog 2546
+RMD160 2d5a0d9624c53daaa0233c68cabc3ad9c42623d4 ChangeLog 2546
+SHA256 4797d58d11a682d71ad1dbbfcac4acbc03dad8cdbfb84d25751a67d965f8d04f ChangeLog 2546
+MISC metadata.xml 531 RMD160 106b4a1816bca4933e7841c9509be25678ef3c86 SHA1 fb289150f453d53ab9f7343511fb22e36562373c SHA256 bede76a003b94174e1358e950c77fe3dfeb2df31095eb9cb357e37ef4c83072f
+MD5 28f4cdb441545af65553f6c46228375b metadata.xml 531
+RMD160 106b4a1816bca4933e7841c9509be25678ef3c86 metadata.xml 531
+SHA256 bede76a003b94174e1358e950c77fe3dfeb2df31095eb9cb357e37ef4c83072f metadata.xml 531
+MD5 a05c75ec566a1e23526e5df960797f69 files/digest-treeviewx-0.5.1 60
+RMD160 f295ca875a3524ed7119503465be0628d074ded6 files/digest-treeviewx-0.5.1 60
+SHA256 242cc3988dc7053a5b608b3d6e8fbf7719b81faab9a70b21a33a9eccea91f94b files/digest-treeviewx-0.5.1 60
diff --git a/sci-biology/trnascan-se/Manifest b/sci-biology/trnascan-se/Manifest
index 3aeb68a301bc..0abe6a8acf14 100644
--- a/sci-biology/trnascan-se/Manifest
+++ b/sci-biology/trnascan-se/Manifest
@@ -1,4 +1,16 @@
+DIST trnascan-se-1.23.tar.bz2 482202
+EBUILD trnascan-se-1.23-r1.ebuild 1264 RMD160 a3ecc78ba04b4cc79197c8e6506bbe0ab7f95605 SHA1 b8c4cb968a8d22ec9dd5d8744a11ab2d02777217 SHA256 73fb39f0b91aec4699011bd8628409657fcd90d9b3c15388c1cce66a24204e4d
+MD5 c30e80cb0e56f840339156c4de52cff6 trnascan-se-1.23-r1.ebuild 1264
+RMD160 a3ecc78ba04b4cc79197c8e6506bbe0ab7f95605 trnascan-se-1.23-r1.ebuild 1264
+SHA256 73fb39f0b91aec4699011bd8628409657fcd90d9b3c15388c1cce66a24204e4d trnascan-se-1.23-r1.ebuild 1264
+MISC ChangeLog 762 RMD160 b001b809bab2e0306ad999ae8d848fa5f90b020e SHA1 98bd67156c4af4473b41be0c41f9920f6dfbb659 SHA256 d037c2144313e809b4d3d874d1c178bdc20959efe69e7308fb1ebf9021dda197
 MD5 3293020e961dcaf23f6c073d302f3342 ChangeLog 762
+RMD160 b001b809bab2e0306ad999ae8d848fa5f90b020e ChangeLog 762
+SHA256 d037c2144313e809b4d3d874d1c178bdc20959efe69e7308fb1ebf9021dda197 ChangeLog 762
+MISC metadata.xml 602 RMD160 d5c096909cc65738e711aff9d9a46c6adb037dc1 SHA1 63adcbc0f42996a96ad27d6402972a2c0c754257 SHA256 b4e3fe2e1af9f8ef8f093ace8479a1cd818c3cab71ca0a04e476fd55a553bc2a
+MD5 1c4ad15328f6bc2b268841a00546ae7e metadata.xml 602
+RMD160 d5c096909cc65738e711aff9d9a46c6adb037dc1 metadata.xml 602
+SHA256 b4e3fe2e1af9f8ef8f093ace8479a1cd818c3cab71ca0a04e476fd55a553bc2a metadata.xml 602
 MD5 9ecd6913936da62c55e691e4123d3f4f files/digest-trnascan-se-1.23-r1 69
-MD5 7f383d52a94b63930cf35ef743535739 metadata.xml 594
-MD5 c30e80cb0e56f840339156c4de52cff6 trnascan-se-1.23-r1.ebuild 1264
+RMD160 17b1f3059afbeab54361bf7932f9f4f1f3e52cf1 files/digest-trnascan-se-1.23-r1 69
+SHA256 8104bb0f2914b4702578601adffb2a1e7c00b797fdbe94150bae8305b3be5222 files/digest-trnascan-se-1.23-r1 69
diff --git a/sci-biology/vienna-rna/Manifest b/sci-biology/vienna-rna/Manifest
index 00aef0306ad5..c1e032cbfa32 100644
--- a/sci-biology/vienna-rna/Manifest
+++ b/sci-biology/vienna-rna/Manifest
@@ -1,6 +1,24 @@
+DIST ViennaRNA-1.4.tar.gz 483047
+DIST ViennaRNA-1.6.tar.gz 1159849
+EBUILD vienna-rna-1.4.ebuild 2407 RMD160 1697ad7c9ea368107c2958429cc53ab35250d41c SHA1 0fabbd6bb11b7d1a5751245ec99a6c319e5a40a2 SHA256 c56b188f15a432c0749e075dab9cdc0a4a0631628b3992027d4718ed3dacd0e6
+MD5 3bb50b8cfbc48270128a17049473d2d4 vienna-rna-1.4.ebuild 2407
+RMD160 1697ad7c9ea368107c2958429cc53ab35250d41c vienna-rna-1.4.ebuild 2407
+SHA256 c56b188f15a432c0749e075dab9cdc0a4a0631628b3992027d4718ed3dacd0e6 vienna-rna-1.4.ebuild 2407
+EBUILD vienna-rna-1.6.ebuild 1580 RMD160 42e85e92352a27c412ceee67ea6f3c3c8ff520bf SHA1 f4b448b47d592c1552d8076b6bd873491bf66b0c SHA256 f42cbe643d664796cf3cf280f3e96fcfbe051f60a4f2d8428684efa539bd8d04
+MD5 b2799931c0a89612080d99a061f372a9 vienna-rna-1.6.ebuild 1580
+RMD160 42e85e92352a27c412ceee67ea6f3c3c8ff520bf vienna-rna-1.6.ebuild 1580
+SHA256 f42cbe643d664796cf3cf280f3e96fcfbe051f60a4f2d8428684efa539bd8d04 vienna-rna-1.6.ebuild 1580
+MISC ChangeLog 1567 RMD160 282b0e33263df8c513bcd6abbc68b710881ab1c4 SHA1 92c1990c4b04cbfc4f8f4263a363db185d1fcb44 SHA256 6e09d922603ea173fbdfd51ae3a09057ef06e38831f18f1b13057a1fbd4fa176
 MD5 9696e22c17a95d53f53bcae89e374e17 ChangeLog 1567
+RMD160 282b0e33263df8c513bcd6abbc68b710881ab1c4 ChangeLog 1567
+SHA256 6e09d922603ea173fbdfd51ae3a09057ef06e38831f18f1b13057a1fbd4fa176 ChangeLog 1567
+MISC metadata.xml 1325 RMD160 5f58c4b21984dc74677713cf133dd800c948c9fd SHA1 5d5f77b63ce447e0378984377c9b20961fdcb5fe SHA256 702d63ddaaf141ceec4a44e8e9b402eeebf3b3f596a261bcccb0fcec78fa152a
+MD5 4004f14e251b4c3467c99569d5841218 metadata.xml 1325
+RMD160 5f58c4b21984dc74677713cf133dd800c948c9fd metadata.xml 1325
+SHA256 702d63ddaaf141ceec4a44e8e9b402eeebf3b3f596a261bcccb0fcec78fa152a metadata.xml 1325
 MD5 f1a1d167e6d5e17687cee4ffb95c6044 files/digest-vienna-rna-1.4 65
+RMD160 dc33135ac5f3b27e7534b2ef38704c7429f31285 files/digest-vienna-rna-1.4 65
+SHA256 852d5aff2e9c90eaf97e1a98a678db51f39ba619d4f6aa58ac693baeb00b8bce files/digest-vienna-rna-1.4 65
 MD5 6f5659558516fa70fdc62ca69172db47 files/digest-vienna-rna-1.6 66
-MD5 07151097bf19cf3d886552b62d5f13c4 metadata.xml 1317
-MD5 3bb50b8cfbc48270128a17049473d2d4 vienna-rna-1.4.ebuild 2407
-MD5 b2799931c0a89612080d99a061f372a9 vienna-rna-1.6.ebuild 1580
+RMD160 11c90b143b6a4df0486cfb5e5d1f0ab9a8dfae96 files/digest-vienna-rna-1.6 66
+SHA256 4ebed7406ba90d2d2f8600750f5a13f8df3497c285f17e87e3206b0545db4909 files/digest-vienna-rna-1.6 66
diff --git a/sci-biology/wise/Manifest b/sci-biology/wise/Manifest
index f7c98e0c3179..a60f257067c6 100644
--- a/sci-biology/wise/Manifest
+++ b/sci-biology/wise/Manifest
@@ -1,8 +1,32 @@
-MD5 25d6eff4509cb9b76addc94788d63641 ChangeLog 1170
-MD5 ecb140907c2def41cb150412463da2c3 files/digest-wise-2.1.23c 64
-MD5 dfe3a28949733a00d7126ed491e8b3f2 files/digest-wise-2.2.0 62
+AUX wise-api.tex.patch 2234 RMD160 c1780513680ad00562ba7589bd44ffa86ee996f4 SHA1 16c2b37efc603003448d37de2b67986b86020777 SHA256 31042f660669ea9df9bc608006cd40479e004f5cbb9aed055d3ec58a853c145d
 MD5 6c1b047599122f062a65ad125739936b files/wise-api.tex.patch 2234
+RMD160 c1780513680ad00562ba7589bd44ffa86ee996f4 files/wise-api.tex.patch 2234
+SHA256 31042f660669ea9df9bc608006cd40479e004f5cbb9aed055d3ec58a853c145d files/wise-api.tex.patch 2234
+AUX wise-env 40 RMD160 2ac8408df8a36f789c28d8d55cf892dba78359c5 SHA1 76bce2a14ae2c2afa82e2c537383d4e730dfcb07 SHA256 de6f742147c43b3820ea261fd158647ae1d2d9e8fe562e0b5c4c0d7e878ced36
 MD5 7321fc88d375cef4db1411e6e6c867ab files/wise-env 40
-MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254
+RMD160 2ac8408df8a36f789c28d8d55cf892dba78359c5 files/wise-env 40
+SHA256 de6f742147c43b3820ea261fd158647ae1d2d9e8fe562e0b5c4c0d7e878ced36 files/wise-env 40
+DIST wise2.1.23c.tar.gz 2099297
+DIST wise2.2.0.tar.gz 2108151
+EBUILD wise-2.1.23c.ebuild 1504 RMD160 8002cffdbd85de445c65783e948139bd2702155a SHA1 072770545259960ce55617943778411d4ace8160 SHA256 d71b24f445732a798212da80e9d93b1422f1b0bf84a6e1db07ac1030acef34b7
 MD5 941a4f8bde488eb8c26a9dc20567a2de wise-2.1.23c.ebuild 1504
+RMD160 8002cffdbd85de445c65783e948139bd2702155a wise-2.1.23c.ebuild 1504
+SHA256 d71b24f445732a798212da80e9d93b1422f1b0bf84a6e1db07ac1030acef34b7 wise-2.1.23c.ebuild 1504
+EBUILD wise-2.2.0.ebuild 1695 RMD160 cdd1e21384c8b7b7263e30acfca364528a1c76a8 SHA1 3d5c7e48db7bd1cdd59d29ae0ca3a4ee2e5766ec SHA256 066133d42e6558c5f938bfb74ee89d3efb4a6b7b43e7ba8360068b8d191899dd
 MD5 a65fe2f917c76f2a8764a4bd19951ec4 wise-2.2.0.ebuild 1695
+RMD160 cdd1e21384c8b7b7263e30acfca364528a1c76a8 wise-2.2.0.ebuild 1695
+SHA256 066133d42e6558c5f938bfb74ee89d3efb4a6b7b43e7ba8360068b8d191899dd wise-2.2.0.ebuild 1695
+MISC ChangeLog 1170 RMD160 fc86de702d62be0b07210a91dc90c54dea5f73cc SHA1 acd18542a64f714d5661c3db547cacb3ce99b127 SHA256 08eaedf273ac0186236ac29a71a7b118ac75bdd7d8732ed5156da729ca7bc107
+MD5 25d6eff4509cb9b76addc94788d63641 ChangeLog 1170
+RMD160 fc86de702d62be0b07210a91dc90c54dea5f73cc ChangeLog 1170
+SHA256 08eaedf273ac0186236ac29a71a7b118ac75bdd7d8732ed5156da729ca7bc107 ChangeLog 1170
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
+MD5 ecb140907c2def41cb150412463da2c3 files/digest-wise-2.1.23c 64
+RMD160 11437605424b1df19e5fe9ed4880da557ae9f84b files/digest-wise-2.1.23c 64
+SHA256 8dd7bb5d259a282d070c367e7a88e77c1b00cce7917a9b8f7cdda26e46780552 files/digest-wise-2.1.23c 64
+MD5 dfe3a28949733a00d7126ed491e8b3f2 files/digest-wise-2.2.0 62
+RMD160 3689c7d27604f3731dbffaf41917b12c6c8e36ae files/digest-wise-2.2.0 62
+SHA256 6805978226c3839281c6681bb0f41566a665482fdc7de7367bc392a7f2bf3f9d files/digest-wise-2.2.0 62