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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit eutils flag-o-matic toolchain-funcs
DESCRIPTION="Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees"
HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html"
SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2"
SLOT="0"
LICENSE="GPL-2"
KEYWORDS="~amd64 ~x86"
IUSE="cpu_flags_x86_sse3 +threads"
REQUIRED_USE="cpu_flags_x86_sse3"
# mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS
DEPEND="" # mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"
S="${WORKDIR}/RAxML-${PV}"
src_prepare() {
epatch "${FILESDIR}"/${P}-makefile.patch
use cpu_flags_x86_sse3 && append-cflags -D__SIM_SSE3
use threads && \
append-cflags -D_USE_PTHREADS && \
append-ldflags -pthread
tc-export CC
}
src_compile() {
emake -f Makefile.gcc
}
src_install() {
dobin raxmlHPC
}
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