diff options
| -rw-r--r-- | dev-haskell/biocore/Manifest | 1 | ||||
| -rw-r--r-- | dev-haskell/biocore/biocore-0.3.1.ebuild | 29 | ||||
| -rw-r--r-- | dev-haskell/biocore/files/biocore-0.3.1-ghc84.patch | 28 | ||||
| -rw-r--r-- | dev-haskell/biocore/metadata.xml | 14 | ||||
| -rw-r--r-- | profiles/package.mask | 1 |
5 files changed, 0 insertions, 73 deletions
diff --git a/dev-haskell/biocore/Manifest b/dev-haskell/biocore/Manifest deleted file mode 100644 index 301a0ddeebdc..000000000000 --- a/dev-haskell/biocore/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST biocore-0.3.1.tar.gz 2812 BLAKE2B ff94cbbb37c7f74c7d08e31a626336d4db621c468dd42df43ba20739224378b1ecd358e74111174eea6a30450e50091245490606da39781d92e905cb1e875db6 SHA512 0a9a3690aa0888c688c8429facd0a26ac94f639222568d2e68a0640714098a40fa38d196800900486d12b36ee735576519d98e4d45f0320261d3f5de9ab09311 diff --git a/dev-haskell/biocore/biocore-0.3.1.ebuild b/dev-haskell/biocore/biocore-0.3.1.ebuild deleted file mode 100644 index 41e81668702e..000000000000 --- a/dev-haskell/biocore/biocore-0.3.1.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -# ebuild generated by hackport 0.3.3.9999 - -CABAL_FEATURES="lib profile haddock hoogle hscolour" -inherit haskell-cabal - -DESCRIPTION="A bioinformatics library" -HOMEPAGE="https://hackage.haskell.org/package/biocore" -SRC_URI="https://hackage.haskell.org/package/${P}/${P}.tar.gz" - -LICENSE="LGPL-2.1" -SLOT="0/${PV}" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="dev-haskell/stringable:=[profile?] - >=dev-lang/ghc-6.10.4:= -" -DEPEND="${RDEPEND} - >=dev-haskell/cabal-1.6.0.3 -" - -PATCHES=( - "${FILESDIR}"/${P}-ghc84.patch -) diff --git a/dev-haskell/biocore/files/biocore-0.3.1-ghc84.patch b/dev-haskell/biocore/files/biocore-0.3.1-ghc84.patch deleted file mode 100644 index b0a404eb8b46..000000000000 --- a/dev-haskell/biocore/files/biocore-0.3.1-ghc84.patch +++ /dev/null @@ -1,28 +0,0 @@ ---- a/src/Bio/Core/Sequence.hs -+++ b/src/Bio/Core/Sequence.hs -@@ -37,2 +37,3 @@ import Data.Stringable hiding (length) - import Data.Monoid -+import qualified Data.Semigroup as S - -@@ -42,2 +43,5 @@ newtype SeqData = SeqData { unSD :: LC.ByteString } - -+instance S.Semigroup SeqData where -+ (<>) (SeqData s1) (SeqData s2) = SeqData (mappend s1 s2) -+ - instance Monoid SeqData where -@@ -51,2 +55,9 @@ newtype SeqLabel = SeqLabel { unSL :: LC.ByteString } - -+instance S.Semigroup SeqLabel where -+ (<>) (SeqLabel s1) (SeqLabel s2) = let -+ (i1:r1) = LC.words s1 -+ (i2:r2) = LC.words s2 -+ sid = mconcat [i1,(LC.pack ":"),i2] -+ in SeqLabel (LC.unwords ([sid]++r1++[LC.pack ":"]++r2)) -+ - instance Monoid SeqLabel where -@@ -68,2 +79,5 @@ newtype QualData = QualData { unQD :: L.ByteString } - -+instance S.Semigroup QualData where -+ (<>) (QualData s1) (QualData s2) = QualData (mappend s1 s2) -+ - instance Monoid QualData where diff --git a/dev-haskell/biocore/metadata.xml b/dev-haskell/biocore/metadata.xml deleted file mode 100644 index 6fe4dd9247b7..000000000000 --- a/dev-haskell/biocore/metadata.xml +++ /dev/null @@ -1,14 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>haskell@gentoo.org</email> - <name>Gentoo Haskell</name> - </maintainer> - <longdescription> - A set of core definitions and data structures - commonly used in bioinformatics. The intention is that bioinformatics - libraries will use this as a common ground to avoid needless incompatibilities - and duplicated work. - </longdescription> -</pkgmetadata> diff --git a/profiles/package.mask b/profiles/package.mask index 85a0a6689a5d..41576708a5b8 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -346,7 +346,6 @@ dev-haskell/base-noprelude dev-haskell/basic-prelude dev-haskell/binary-instances dev-haskell/binary-tagged -dev-haskell/biocore # Hans de Graaff <graaff@gentoo.org> (2022-07-16) # No longer supported upstream. Use a newer ruby version instead. |