diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2015-08-24 12:47:45 +0200 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2015-08-24 12:49:19 +0200 |
| commit | eaaface92ee81f30a6ac66fe7acbcc42c00dc450 (patch) | |
| tree | 6a380aa33005e1997c9dbe6f1c00520274543303 /sci-chemistry | |
| parent | sci-libs/ViSP: Disable Coin3D to avoid automagic. Bug #558498. (diff) | |
| download | gentoo-eaaface92ee81f30a6ac66fe7acbcc42c00dc450.tar.gz gentoo-eaaface92ee81f30a6ac66fe7acbcc42c00dc450.tar.bz2 gentoo-eaaface92ee81f30a6ac66fe7acbcc42c00dc450.zip | |
Use https by default
Convert all URLs for sites supporting encrypted connections from http to https
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Diffstat (limited to 'sci-chemistry')
161 files changed, 167 insertions, 167 deletions
diff --git a/sci-chemistry/GromacsWrapper/metadata.xml b/sci-chemistry/GromacsWrapper/metadata.xml index 43390c98619e..cfb4336787ce 100644 --- a/sci-chemistry/GromacsWrapper/metadata.xml +++ b/sci-chemistry/GromacsWrapper/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/PyMca/metadata.xml b/sci-chemistry/PyMca/metadata.xml index 91146f1d585b..27a22d2d8694 100644 --- a/sci-chemistry/PyMca/metadata.xml +++ b/sci-chemistry/PyMca/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/acpype/acpype-374.ebuild b/sci-chemistry/acpype/acpype-374.ebuild index 56036152102c..ef9eb48f3c54 100644 --- a/sci-chemistry/acpype/acpype-374.ebuild +++ b/sci-chemistry/acpype/acpype-374.ebuild @@ -10,7 +10,7 @@ inherit python DESCRIPTION="AnteChamber PYthon Parser interfacE" HOMEPAGE="http://code.google.com/p/acpype/" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" LICENSE="GPL-3" SLOT="0" diff --git a/sci-chemistry/acpype/acpype-389.ebuild b/sci-chemistry/acpype/acpype-389.ebuild index 6ff35e1fcc47..eeee1a4ba219 100644 --- a/sci-chemistry/acpype/acpype-389.ebuild +++ b/sci-chemistry/acpype/acpype-389.ebuild @@ -10,7 +10,7 @@ inherit python-r1 DESCRIPTION="AnteChamber PYthon Parser interfacE" HOMEPAGE="http://code.google.com/p/acpype/" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" LICENSE="GPL-3" SLOT="0" diff --git a/sci-chemistry/acpype/metadata.xml b/sci-chemistry/acpype/metadata.xml index 13ef0bf5a17c..c9d29b2b9fc2 100644 --- a/sci-chemistry/acpype/metadata.xml +++ b/sci-chemistry/acpype/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/ambertools/metadata.xml b/sci-chemistry/ambertools/metadata.xml index 13ef0bf5a17c..c9d29b2b9fc2 100644 --- a/sci-chemistry/ambertools/metadata.xml +++ b/sci-chemistry/ambertools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/apbs/metadata.xml b/sci-chemistry/apbs/metadata.xml index f1b8467dd96e..74f39f317255 100644 --- a/sci-chemistry/apbs/metadata.xml +++ b/sci-chemistry/apbs/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/aqua/metadata.xml b/sci-chemistry/aqua/metadata.xml index 1837bbc07a6e..7abf15ec3b9a 100644 --- a/sci-chemistry/aqua/metadata.xml +++ b/sci-chemistry/aqua/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/aria/metadata.xml b/sci-chemistry/aria/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/aria/metadata.xml +++ b/sci-chemistry/aria/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/arp-warp-bin/metadata.xml b/sci-chemistry/arp-warp-bin/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/arp-warp-bin/metadata.xml +++ b/sci-chemistry/arp-warp-bin/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/autodock/metadata.xml b/sci-chemistry/autodock/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/autodock/metadata.xml +++ b/sci-chemistry/autodock/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/autodock_vina/metadata.xml b/sci-chemistry/autodock_vina/metadata.xml index 3f44e973345a..c5b5f6518be3 100644 --- a/sci-chemistry/autodock_vina/metadata.xml +++ b/sci-chemistry/autodock_vina/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/avogadro/metadata.xml b/sci-chemistry/avogadro/metadata.xml index bacd1480b120..0db3a92885d7 100644 --- a/sci-chemistry/avogadro/metadata.xml +++ b/sci-chemistry/avogadro/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <longdescription> diff --git a/sci-chemistry/azara/metadata.xml b/sci-chemistry/azara/metadata.xml index c0432fefe855..07b19ef83cd8 100644 --- a/sci-chemistry/azara/metadata.xml +++ b/sci-chemistry/azara/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/babel/metadata.xml b/sci-chemistry/babel/metadata.xml index e42d0af60f42..81cadec14597 100644 --- a/sci-chemistry/babel/metadata.xml +++ b/sci-chemistry/babel/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/balbes/metadata.xml b/sci-chemistry/balbes/metadata.xml index 4bb6be5e5d0c..86a281c82c1b 100644 --- a/sci-chemistry/balbes/metadata.xml +++ b/sci-chemistry/balbes/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/ball/metadata.xml b/sci-chemistry/ball/metadata.xml index 066e13dd4a53..8aa9f142a09a 100644 --- a/sci-chemistry/ball/metadata.xml +++ b/sci-chemistry/ball/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/bkchem/metadata.xml b/sci-chemistry/bkchem/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/bkchem/metadata.xml +++ b/sci-chemistry/bkchem/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/bodr/metadata.xml b/sci-chemistry/bodr/metadata.xml index a30a888d000f..4f4e62308aa0 100644 --- a/sci-chemistry/bodr/metadata.xml +++ b/sci-chemistry/bodr/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <longdescription> diff --git a/sci-chemistry/burrow-owl/metadata.xml b/sci-chemistry/burrow-owl/metadata.xml index 9849d77b1370..7a13ba6ca1d5 100644 --- a/sci-chemistry/burrow-owl/metadata.xml +++ b/sci-chemistry/burrow-owl/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <upstream> diff --git a/sci-chemistry/cara-bin/cara-bin-1.8.4-r1.ebuild b/sci-chemistry/cara-bin/cara-bin-1.8.4-r1.ebuild index d17c035cd3bc..874aafc00617 100644 --- a/sci-chemistry/cara-bin/cara-bin-1.8.4-r1.ebuild +++ b/sci-chemistry/cara-bin/cara-bin-1.8.4-r1.ebuild @@ -10,7 +10,7 @@ MY_P="${MY_PN}_${PV}" DESCRIPTION="Analysis of NMR spectra and Computer Aided Resonance Assignment" SRC_URI=" http://www.cara.nmr-software.org/downloads/${MY_P}_linux.gz - http://dev.gentoo.org/~jlec/distfiles//Start1.2.cara.xz" + https://dev.gentoo.org/~jlec/distfiles//Start1.2.cara.xz" HOMEPAGE="http://www.nmr.ch" LICENSE="CARA" diff --git a/sci-chemistry/cara-bin/metadata.xml b/sci-chemistry/cara-bin/metadata.xml index 4a00a64b40ae..d3a09d38e189 100644 --- a/sci-chemistry/cara-bin/metadata.xml +++ b/sci-chemistry/cara-bin/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer> <email>jlec@gentoo.org</email> diff --git a/sci-chemistry/ccp4-apps/ccp4-apps-6.1.3-r13.ebuild b/sci-chemistry/ccp4-apps/ccp4-apps-6.1.3-r13.ebuild index 854cc48db0cf..5e1032133922 100644 --- a/sci-chemistry/ccp4-apps/ccp4-apps-6.1.3-r13.ebuild +++ b/sci-chemistry/ccp4-apps/ccp4-apps-6.1.3-r13.ebuild @@ -20,11 +20,11 @@ HOMEPAGE="http://www.ccp4.ac.uk/" SRC="ftp://ftp.ccp4.ac.uk/ccp4" SRC_URI=" ${SRC}/${PV}/${MY_P}-core-src.tar.gz - http://dev.gentoo.org/~jlec/distfiles/${PV}-oasis4.0.patch.bz2" + https://dev.gentoo.org/~jlec/distfiles/${PV}-oasis4.0.patch.bz2" # patch tarball from upstream [[ -n ${UPDATE} ]] && SRC_URI="${SRC_URI} ${SRC}/${PV}/updates/${P}-src-patch-${UPDATE}.tar.gz" # patches created by us - [[ -n ${PATCHDATE} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/science-dist/${PV}-${PATCHDATE}-updates.patch.bz2" + [[ -n ${PATCHDATE} ]] && SRC_URI="${SRC_URI} https://dev.gentoo.org/~jlec/science-dist/${PV}-${PATCHDATE}-updates.patch.bz2" for i in $(seq $PATCH_TOT); do NAME="PATCH${i}[1]" diff --git a/sci-chemistry/ccp4-apps/metadata.xml b/sci-chemistry/ccp4-apps/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/ccp4-apps/metadata.xml +++ b/sci-chemistry/ccp4-apps/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/ccp4/metadata.xml b/sci-chemistry/ccp4/metadata.xml index d37774eb9ada..7f1317f944c8 100644 --- a/sci-chemistry/ccp4/metadata.xml +++ b/sci-chemistry/ccp4/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <use> diff --git a/sci-chemistry/ccp4i/ccp4i-6.1.3-r4.ebuild b/sci-chemistry/ccp4i/ccp4i-6.1.3-r4.ebuild index f5ac55ef17fa..bdfba7800493 100644 --- a/sci-chemistry/ccp4i/ccp4i-6.1.3-r4.ebuild +++ b/sci-chemistry/ccp4i/ccp4i-6.1.3-r4.ebuild @@ -21,9 +21,9 @@ HOMEPAGE="http://www.ccp4.ac.uk/" SRC_URI=" ${SRC}/${PV}/${MY_P}-core-src.tar.gz mirror://gentoo/${P}-arpwarp.patch.bz2 - http://dev.gentoo.org/~jlec/distfiles/${PV}-oasis4.0.patch.bz2" + https://dev.gentoo.org/~jlec/distfiles/${PV}-oasis4.0.patch.bz2" [[ -n ${UPDATE} ]] && SRC_URI="${SRC_URI} ${SRC}/${PV}/updates/${P}-src-patch-${UPDATE}.tar.gz" -[[ -n ${PATCHDATE} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/science-dist/${PV}-${PATCHDATE}-updates.patch.bz2" +[[ -n ${PATCHDATE} ]] && SRC_URI="${SRC_URI} https://dev.gentoo.org/~jlec/science-dist/${PV}-${PATCHDATE}-updates.patch.bz2" SLOT="0" KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux" diff --git a/sci-chemistry/ccp4i/metadata.xml b/sci-chemistry/ccp4i/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/ccp4i/metadata.xml +++ b/sci-chemistry/ccp4i/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild b/sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild index 6768d790f140..1ed31b265093 100644 --- a/sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild +++ b/sci-chemistry/ccpn/ccpn-2.4.1_p150226.ebuild @@ -18,7 +18,7 @@ DESCRIPTION="The Collaborative Computing Project for NMR" HOMEPAGE="http://www.ccpn.ac.uk/ccpn" SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz" [[ -n ${PATCHSET} ]] \ - && SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz" + && SRC_URI+=" https://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz" SLOT="0" LICENSE="|| ( CCPN LGPL-2.1 )" diff --git a/sci-chemistry/ccpn/ccpn-2.4.2.ebuild b/sci-chemistry/ccpn/ccpn-2.4.2.ebuild index b97807a88f38..07fc1ac4abab 100644 --- a/sci-chemistry/ccpn/ccpn-2.4.2.ebuild +++ b/sci-chemistry/ccpn/ccpn-2.4.2.ebuild @@ -18,7 +18,7 @@ DESCRIPTION="The Collaborative Computing Project for NMR" HOMEPAGE="http://www.ccpn.ac.uk/ccpn" SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz" [[ -n ${PATCHSET} ]] \ - && SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz" + && SRC_URI+=" https://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz" SLOT="0" LICENSE="|| ( CCPN LGPL-2.1 )" diff --git a/sci-chemistry/ccpn/ccpn-2.4.2_p150325.ebuild b/sci-chemistry/ccpn/ccpn-2.4.2_p150325.ebuild index 6768d790f140..1ed31b265093 100644 --- a/sci-chemistry/ccpn/ccpn-2.4.2_p150325.ebuild +++ b/sci-chemistry/ccpn/ccpn-2.4.2_p150325.ebuild @@ -18,7 +18,7 @@ DESCRIPTION="The Collaborative Computing Project for NMR" HOMEPAGE="http://www.ccpn.ac.uk/ccpn" SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz" [[ -n ${PATCHSET} ]] \ - && SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz" + && SRC_URI+=" https://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz" SLOT="0" LICENSE="|| ( CCPN LGPL-2.1 )" diff --git a/sci-chemistry/ccpn/ccpn-2.4.2_p150413.ebuild b/sci-chemistry/ccpn/ccpn-2.4.2_p150413.ebuild index 6768d790f140..1ed31b265093 100644 --- a/sci-chemistry/ccpn/ccpn-2.4.2_p150413.ebuild +++ b/sci-chemistry/ccpn/ccpn-2.4.2_p150413.ebuild @@ -18,7 +18,7 @@ DESCRIPTION="The Collaborative Computing Project for NMR" HOMEPAGE="http://www.ccpn.ac.uk/ccpn" SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz" [[ -n ${PATCHSET} ]] \ - && SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz" + && SRC_URI+=" https://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz" SLOT="0" LICENSE="|| ( CCPN LGPL-2.1 )" diff --git a/sci-chemistry/ccpn/ccpn-2.4.2_p150421.ebuild b/sci-chemistry/ccpn/ccpn-2.4.2_p150421.ebuild index 6768d790f140..1ed31b265093 100644 --- a/sci-chemistry/ccpn/ccpn-2.4.2_p150421.ebuild +++ b/sci-chemistry/ccpn/ccpn-2.4.2_p150421.ebuild @@ -18,7 +18,7 @@ DESCRIPTION="The Collaborative Computing Project for NMR" HOMEPAGE="http://www.ccpn.ac.uk/ccpn" SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz" [[ -n ${PATCHSET} ]] \ - && SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz" + && SRC_URI+=" https://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz" SLOT="0" LICENSE="|| ( CCPN LGPL-2.1 )" diff --git a/sci-chemistry/ccpn/metadata.xml b/sci-chemistry/ccpn/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/ccpn/metadata.xml +++ b/sci-chemistry/ccpn/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/chemical-mime-data/metadata.xml b/sci-chemistry/chemical-mime-data/metadata.xml index 941ce487e86e..0d1fc83dac01 100644 --- a/sci-chemistry/chemical-mime-data/metadata.xml +++ b/sci-chemistry/chemical-mime-data/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/chemtool/metadata.xml b/sci-chemistry/chemtool/metadata.xml index 26c258873424..b5b52fbefadc 100644 --- a/sci-chemistry/chemtool/metadata.xml +++ b/sci-chemistry/chemtool/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <use> diff --git a/sci-chemistry/clashlist/metadata.xml b/sci-chemistry/clashlist/metadata.xml index c96b852229d5..1cfa11ba0322 100644 --- a/sci-chemistry/clashlist/metadata.xml +++ b/sci-chemistry/clashlist/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/cluster/metadata.xml b/sci-chemistry/cluster/metadata.xml index 76f6a5d9e463..4031454c0425 100644 --- a/sci-chemistry/cluster/metadata.xml +++ b/sci-chemistry/cluster/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/cns/metadata.xml b/sci-chemistry/cns/metadata.xml index a9cb92ec3f79..763c888e85d7 100644 --- a/sci-chemistry/cns/metadata.xml +++ b/sci-chemistry/cns/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/coot/coot-0.7.1-r1.ebuild b/sci-chemistry/coot/coot-0.7.1-r1.ebuild index c55da6705209..001145ee18ee 100644 --- a/sci-chemistry/coot/coot-0.7.1-r1.ebuild +++ b/sci-chemistry/coot/coot-0.7.1-r1.ebuild @@ -20,7 +20,7 @@ DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, comple HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/" SRC_URI=" http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/source/releases/${MY_P}.tar.gz - test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )" + test? ( https://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )" SLOT="0" LICENSE="GPL-3" diff --git a/sci-chemistry/coot/coot-0.7.2.ebuild b/sci-chemistry/coot/coot-0.7.2.ebuild index 54e430017fc2..ce619b5e4347 100644 --- a/sci-chemistry/coot/coot-0.7.2.ebuild +++ b/sci-chemistry/coot/coot-0.7.2.ebuild @@ -20,7 +20,7 @@ DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, comple HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/" SRC_URI=" http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/source/releases/${MY_P}.tar.gz - test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )" + test? ( https://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )" SLOT="0" LICENSE="GPL-3" diff --git a/sci-chemistry/coot/coot-0.7.ebuild b/sci-chemistry/coot/coot-0.7.ebuild index 2922f57bfe37..f5cdfa54b525 100644 --- a/sci-chemistry/coot/coot-0.7.ebuild +++ b/sci-chemistry/coot/coot-0.7.ebuild @@ -20,7 +20,7 @@ DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, comple HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/" SRC_URI=" http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz - test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )" + test? ( https://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )" SLOT="0" LICENSE="GPL-3" diff --git a/sci-chemistry/coot/metadata.xml b/sci-chemistry/coot/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/coot/metadata.xml +++ b/sci-chemistry/coot/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/cyana/metadata.xml b/sci-chemistry/cyana/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/cyana/metadata.xml +++ b/sci-chemistry/cyana/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/dssp/metadata.xml b/sci-chemistry/dssp/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/dssp/metadata.xml +++ b/sci-chemistry/dssp/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/easychem/metadata.xml b/sci-chemistry/easychem/metadata.xml index 0a2ea04beeec..afc6b5200639 100644 --- a/sci-chemistry/easychem/metadata.xml +++ b/sci-chemistry/easychem/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <longdescription> diff --git a/sci-chemistry/eden/metadata.xml b/sci-chemistry/eden/metadata.xml index 732277b2b750..25e49248ee88 100644 --- a/sci-chemistry/eden/metadata.xml +++ b/sci-chemistry/eden/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <use> diff --git a/sci-chemistry/elem/metadata.xml b/sci-chemistry/elem/metadata.xml index 841c9b22af92..72e4f3e9d366 100644 --- a/sci-chemistry/elem/metadata.xml +++ b/sci-chemistry/elem/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <upstream> diff --git a/sci-chemistry/freeon/metadata.xml b/sci-chemistry/freeon/metadata.xml index eba82069680b..e63adf63103f 100644 --- a/sci-chemistry/freeon/metadata.xml +++ b/sci-chemistry/freeon/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <longdescription lang="en"> FreeON is an experimental, open source (GPL) suite of programs for linear scaling quantum chemistry. diff --git a/sci-chemistry/gabedit/metadata.xml b/sci-chemistry/gabedit/metadata.xml index 574871e7938f..33916a043c40 100644 --- a/sci-chemistry/gabedit/metadata.xml +++ b/sci-chemistry/gabedit/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/gamess/metadata.xml b/sci-chemistry/gamess/metadata.xml index 65e218a68820..32e0d3ce91f7 100644 --- a/sci-chemistry/gamess/metadata.xml +++ b/sci-chemistry/gamess/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer> <email>alexxy@gentoo.org</email> diff --git a/sci-chemistry/gamessq/metadata.xml b/sci-chemistry/gamessq/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/gamessq/metadata.xml +++ b/sci-chemistry/gamessq/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/gelemental/metadata.xml b/sci-chemistry/gelemental/metadata.xml index d63987f1d9ef..ddfa801148c1 100644 --- a/sci-chemistry/gelemental/metadata.xml +++ b/sci-chemistry/gelemental/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <upstream> diff --git a/sci-chemistry/ghemical/metadata.xml b/sci-chemistry/ghemical/metadata.xml index 631ea739d033..35104ea8426f 100644 --- a/sci-chemistry/ghemical/metadata.xml +++ b/sci-chemistry/ghemical/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <longdescription> diff --git a/sci-chemistry/gopenmol/metadata.xml b/sci-chemistry/gopenmol/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/gopenmol/metadata.xml +++ b/sci-chemistry/gopenmol/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/gperiodic/metadata.xml b/sci-chemistry/gperiodic/metadata.xml index e87a8759836d..41fe21bdc1f1 100644 --- a/sci-chemistry/gperiodic/metadata.xml +++ b/sci-chemistry/gperiodic/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <longdescription> diff --git a/sci-chemistry/gromacs/metadata.xml b/sci-chemistry/gromacs/metadata.xml index 083289348b0d..f25494e021ee 100644 --- a/sci-chemistry/gromacs/metadata.xml +++ b/sci-chemistry/gromacs/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/gsim/metadata.xml b/sci-chemistry/gsim/metadata.xml index 9ebe36a07183..53c81e1e9f23 100644 --- a/sci-chemistry/gsim/metadata.xml +++ b/sci-chemistry/gsim/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/gtk-gamess/metadata.xml b/sci-chemistry/gtk-gamess/metadata.xml index 0ddae2afddfa..28837ecf26e4 100644 --- a/sci-chemistry/gtk-gamess/metadata.xml +++ b/sci-chemistry/gtk-gamess/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/hollow/metadata.xml b/sci-chemistry/hollow/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/hollow/metadata.xml +++ b/sci-chemistry/hollow/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/icm-browser/metadata.xml b/sci-chemistry/icm-browser/metadata.xml index 3cfdd8f68922..7b8de7786f4a 100644 --- a/sci-chemistry/icm-browser/metadata.xml +++ b/sci-chemistry/icm-browser/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/icm/metadata.xml b/sci-chemistry/icm/metadata.xml index 55d880878df8..38c8cae2a092 100644 --- a/sci-chemistry/icm/metadata.xml +++ b/sci-chemistry/icm/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/imosflm/metadata.xml b/sci-chemistry/imosflm/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/imosflm/metadata.xml +++ b/sci-chemistry/imosflm/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/jmol/jmol-12.0.45-r1.ebuild b/sci-chemistry/jmol/jmol-12.0.45-r1.ebuild index 0112130458e2..8cff18f777c9 100644 --- a/sci-chemistry/jmol/jmol-12.0.45-r1.ebuild +++ b/sci-chemistry/jmol/jmol-12.0.45-r1.ebuild @@ -13,7 +13,7 @@ DESCRIPTION="Java molecular viever for 3-D chemical structures" HOMEPAGE="http://jmol.sourceforge.net/" SRC_URI=" mirror://sourceforge/${PN}/${MY_P}-${PV}-full.tar.gz - http://dev.gentoo.org/~jlec/distfiles/${PN}-selfSignedCertificate.store.tar" + https://dev.gentoo.org/~jlec/distfiles/${PN}-selfSignedCertificate.store.tar" WEBAPP_MANUAL_SLOT="yes" SLOT="0" diff --git a/sci-chemistry/jmol/jmol-12.2.27-r1.ebuild b/sci-chemistry/jmol/jmol-12.2.27-r1.ebuild index 0e48dbb2d725..dd6d8f3c53e3 100644 --- a/sci-chemistry/jmol/jmol-12.2.27-r1.ebuild +++ b/sci-chemistry/jmol/jmol-12.2.27-r1.ebuild @@ -13,7 +13,7 @@ DESCRIPTION="Java molecular viever for 3-D chemical structures" HOMEPAGE="http://jmol.sourceforge.net/" SRC_URI=" mirror://sourceforge/${PN}/${MY_P}-${PV}-full.tar.gz - http://dev.gentoo.org/~jlec/distfiles/${PN}-selfSignedCertificate.store.tar" + https://dev.gentoo.org/~jlec/distfiles/${PN}-selfSignedCertificate.store.tar" LICENSE="LGPL-2.1" KEYWORDS="~x86 ~amd64" diff --git a/sci-chemistry/jmol/metadata.xml b/sci-chemistry/jmol/metadata.xml index 9e4d1db2e0a2..06363e3d066c 100644 --- a/sci-chemistry/jmol/metadata.xml +++ b/sci-chemistry/jmol/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/ksdssp/metadata.xml b/sci-chemistry/ksdssp/metadata.xml index 1837bbc07a6e..7abf15ec3b9a 100644 --- a/sci-chemistry/ksdssp/metadata.xml +++ b/sci-chemistry/ksdssp/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/makecif/metadata.xml b/sci-chemistry/makecif/metadata.xml index 993c1d1ffcda..d4c27a116940 100644 --- a/sci-chemistry/makecif/metadata.xml +++ b/sci-chemistry/makecif/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/mars/metadata.xml b/sci-chemistry/mars/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/mars/metadata.xml +++ b/sci-chemistry/mars/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/massxpert/metadata.xml b/sci-chemistry/massxpert/metadata.xml index a4137981114b..88c9b68b4390 100644 --- a/sci-chemistry/massxpert/metadata.xml +++ b/sci-chemistry/massxpert/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/mdanalysis/metadata.xml b/sci-chemistry/mdanalysis/metadata.xml index 5ef07a39e7e1..d614d19e3c24 100644 --- a/sci-chemistry/mdanalysis/metadata.xml +++ b/sci-chemistry/mdanalysis/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> <maintainer> diff --git a/sci-chemistry/mead/metadata.xml b/sci-chemistry/mead/metadata.xml index 9ac9ffdb3a41..9730805ca481 100644 --- a/sci-chemistry/mead/metadata.xml +++ b/sci-chemistry/mead/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/metadata.xml b/sci-chemistry/metadata.xml index c60d4c31553f..aaf33941c41c 100644 --- a/sci-chemistry/metadata.xml +++ b/sci-chemistry/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE catmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE catmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <catmetadata> <longdescription lang="en"> The sci-chemistry category contains software that can be used diff --git a/sci-chemistry/mm-align/metadata.xml b/sci-chemistry/mm-align/metadata.xml index 2634f696a953..ec69ed2d7200 100644 --- a/sci-chemistry/mm-align/metadata.xml +++ b/sci-chemistry/mm-align/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/mm-align/mm-align-20120321.ebuild b/sci-chemistry/mm-align/mm-align-20120321.ebuild index c0ef57c832af..7a0c7da5d89b 100644 --- a/sci-chemistry/mm-align/mm-align-20120321.ebuild +++ b/sci-chemistry/mm-align/mm-align-20120321.ebuild @@ -8,7 +8,7 @@ inherit cmake-utils fortran-2 DESCRIPTION="Protein Complex Structural Alignment" HOMEPAGE="http://zhanglab.ccmb.med.umich.edu/MM-align/" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/MM-align-${PV}.tar.xz" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/MM-align-${PV}.tar.xz" SLOT="0" LICENSE="tm-align" diff --git a/sci-chemistry/molden/metadata.xml b/sci-chemistry/molden/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/molden/metadata.xml +++ b/sci-chemistry/molden/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/moldy/metadata.xml b/sci-chemistry/moldy/metadata.xml index e42d0af60f42..81cadec14597 100644 --- a/sci-chemistry/moldy/metadata.xml +++ b/sci-chemistry/moldy/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/molequeue/metadata.xml b/sci-chemistry/molequeue/metadata.xml index e7326743bc35..aa367723bff4 100644 --- a/sci-chemistry/molequeue/metadata.xml +++ b/sci-chemistry/molequeue/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci</herd> <maintainer> diff --git a/sci-chemistry/molmol/metadata.xml b/sci-chemistry/molmol/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/molmol/metadata.xml +++ b/sci-chemistry/molmol/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/molrep/metadata.xml b/sci-chemistry/molrep/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/molrep/metadata.xml +++ b/sci-chemistry/molrep/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/molrep/molrep-11.0.03-r1.ebuild b/sci-chemistry/molrep/molrep-11.0.03-r1.ebuild index 3a0d7538b481..3373bbba6f97 100644 --- a/sci-chemistry/molrep/molrep-11.0.03-r1.ebuild +++ b/sci-chemistry/molrep/molrep-11.0.03-r1.ebuild @@ -8,7 +8,7 @@ inherit eutils flag-o-matic fortran-2 multilib toolchain-funcs DESCRIPTION="molecular replacement program" HOMEPAGE="http://www.ysbl.york.ac.uk/~alexei/molrep.html" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.gz" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.gz" LICENSE="ccp4" SLOT="0" diff --git a/sci-chemistry/molscript/metadata.xml b/sci-chemistry/molscript/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/molscript/metadata.xml +++ b/sci-chemistry/molscript/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/molsketch/metadata.xml b/sci-chemistry/molsketch/metadata.xml index 58bc5230b1ab..97797187772d 100644 --- a/sci-chemistry/molsketch/metadata.xml +++ b/sci-chemistry/molsketch/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/mongochem/metadata.xml b/sci-chemistry/mongochem/metadata.xml index 411a151f03ae..7fc3a2da68b2 100644 --- a/sci-chemistry/mongochem/metadata.xml +++ b/sci-chemistry/mongochem/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/mopac7/metadata.xml b/sci-chemistry/mopac7/metadata.xml index 839734dd5d8b..6b133528cca2 100644 --- a/sci-chemistry/mopac7/metadata.xml +++ b/sci-chemistry/mopac7/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <use> diff --git a/sci-chemistry/mosflm/metadata.xml b/sci-chemistry/mosflm/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/mosflm/metadata.xml +++ b/sci-chemistry/mosflm/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/mpqc/metadata.xml b/sci-chemistry/mpqc/metadata.xml index 6526df6225a9..fbaefbdca5e6 100644 --- a/sci-chemistry/mpqc/metadata.xml +++ b/sci-chemistry/mpqc/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <upstream> diff --git a/sci-chemistry/mrbump/metadata.xml b/sci-chemistry/mrbump/metadata.xml index 4aaae064be71..e8f071061fe6 100644 --- a/sci-chemistry/mrbump/metadata.xml +++ b/sci-chemistry/mrbump/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/msms-bin/metadata.xml b/sci-chemistry/msms-bin/metadata.xml index 51426ab8d003..9a05a46c54e8 100644 --- a/sci-chemistry/msms-bin/metadata.xml +++ b/sci-chemistry/msms-bin/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/mustang/metadata.xml b/sci-chemistry/mustang/metadata.xml index e42d0af60f42..81cadec14597 100644 --- a/sci-chemistry/mustang/metadata.xml +++ b/sci-chemistry/mustang/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/namd/metadata.xml b/sci-chemistry/namd/metadata.xml index c73650100bed..6a666536b770 100644 --- a/sci-chemistry/namd/metadata.xml +++ b/sci-chemistry/namd/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/nmrglue/metadata.xml b/sci-chemistry/nmrglue/metadata.xml index d1c1fa8f0564..7a10bb967ea5 100644 --- a/sci-chemistry/nmrglue/metadata.xml +++ b/sci-chemistry/nmrglue/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/numbat/metadata.xml b/sci-chemistry/numbat/metadata.xml index 054dc8435cf6..79660b190795 100644 --- a/sci-chemistry/numbat/metadata.xml +++ b/sci-chemistry/numbat/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/oasis/metadata.xml b/sci-chemistry/oasis/metadata.xml index 8412c2f3d312..c7bbdca506fa 100644 --- a/sci-chemistry/oasis/metadata.xml +++ b/sci-chemistry/oasis/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <use> diff --git a/sci-chemistry/oasis/oasis-4.0-r3.ebuild b/sci-chemistry/oasis/oasis-4.0-r3.ebuild index 8c259f6be9a3..98c8aaef47b4 100644 --- a/sci-chemistry/oasis/oasis-4.0-r3.ebuild +++ b/sci-chemistry/oasis/oasis-4.0-r3.ebuild @@ -10,7 +10,7 @@ MY_P="${PN}${PV}_Linux" DESCRIPTION="A direct-method program for SAD/SIR phasing" HOMEPAGE="http://cryst.iphy.ac.cn/Project/protein/protein-I.html" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${MY_P}.zip" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${MY_P}.zip" SLOT="0" KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux" diff --git a/sci-chemistry/openbabel-perl/metadata.xml b/sci-chemistry/openbabel-perl/metadata.xml index 068b6b2c4442..f148d39fec48 100644 --- a/sci-chemistry/openbabel-perl/metadata.xml +++ b/sci-chemistry/openbabel-perl/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <longdescription> diff --git a/sci-chemistry/openbabel-python/metadata.xml b/sci-chemistry/openbabel-python/metadata.xml index 2fec701db8fc..f606bd9767ea 100644 --- a/sci-chemistry/openbabel-python/metadata.xml +++ b/sci-chemistry/openbabel-python/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <longdescription> diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml index 3353dfa452a4..7f9526012632 100644 --- a/sci-chemistry/openbabel/metadata.xml +++ b/sci-chemistry/openbabel/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <longdescription> diff --git a/sci-chemistry/ortep3/metadata.xml b/sci-chemistry/ortep3/metadata.xml index e42d0af60f42..81cadec14597 100644 --- a/sci-chemistry/ortep3/metadata.xml +++ b/sci-chemistry/ortep3/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/p3d/metadata.xml b/sci-chemistry/p3d/metadata.xml index bd602bd0e68a..60d7e485b20d 100644 --- a/sci-chemistry/p3d/metadata.xml +++ b/sci-chemistry/p3d/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/parassign/metadata.xml b/sci-chemistry/parassign/metadata.xml index 144ad6d646ca..47e56c25699d 100644 --- a/sci-chemistry/parassign/metadata.xml +++ b/sci-chemistry/parassign/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/pdb-extract/metadata.xml b/sci-chemistry/pdb-extract/metadata.xml index e42d0af60f42..81cadec14597 100644 --- a/sci-chemistry/pdb-extract/metadata.xml +++ b/sci-chemistry/pdb-extract/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/pdb-tools/metadata.xml b/sci-chemistry/pdb-tools/metadata.xml index 13e9a3c93979..766f449da23c 100644 --- a/sci-chemistry/pdb-tools/metadata.xml +++ b/sci-chemistry/pdb-tools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/pdb2pqr/metadata.xml b/sci-chemistry/pdb2pqr/metadata.xml index 81003ba2152a..f838e4e47b79 100644 --- a/sci-chemistry/pdb2pqr/metadata.xml +++ b/sci-chemistry/pdb2pqr/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <use> diff --git a/sci-chemistry/pdbcat/metadata.xml b/sci-chemistry/pdbcat/metadata.xml index 54c920d084c3..27bb8ad18b3f 100644 --- a/sci-chemistry/pdbcat/metadata.xml +++ b/sci-chemistry/pdbcat/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/pdbcns/metadata.xml b/sci-chemistry/pdbcns/metadata.xml index 1837bbc07a6e..7abf15ec3b9a 100644 --- a/sci-chemistry/pdbcns/metadata.xml +++ b/sci-chemistry/pdbcns/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/pdbcns/pdbcns-2.0.010504.ebuild b/sci-chemistry/pdbcns/pdbcns-2.0.010504.ebuild index 94b8c6138845..5c83353ca2cb 100644 --- a/sci-chemistry/pdbcns/pdbcns-2.0.010504.ebuild +++ b/sci-chemistry/pdbcns/pdbcns-2.0.010504.ebuild @@ -7,7 +7,7 @@ EAPI=4 DESCRIPTION="Convert atom names for common amino acids and nucleic acid bases from PDB format to CNS or back" HOMEPAGE="http://www.mybiosoftware.com/3d-molecular-model/314/" #SRC_URI="http://kinemage.biochem.duke.edu/php/downlode.php?filename=/downloads/software/scripts/${PN}.${PV}.perl.tgz" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${PN}.${PV}.perl.tgz" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${PN}.${PV}.perl.tgz" SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" diff --git a/sci-chemistry/pdbmat/metadata.xml b/sci-chemistry/pdbmat/metadata.xml index d542eb59e001..b0168b1c4b0c 100644 --- a/sci-chemistry/pdbmat/metadata.xml +++ b/sci-chemistry/pdbmat/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/phaser/metadata.xml b/sci-chemistry/phaser/metadata.xml index 6b4826474daa..66f6e76532ac 100644 --- a/sci-chemistry/phaser/metadata.xml +++ b/sci-chemistry/phaser/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/platon/metadata.xml b/sci-chemistry/platon/metadata.xml index e42d0af60f42..81cadec14597 100644 --- a/sci-chemistry/platon/metadata.xml +++ b/sci-chemistry/platon/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/pointless/metadata.xml b/sci-chemistry/pointless/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/pointless/metadata.xml +++ b/sci-chemistry/pointless/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/povscript+/metadata.xml b/sci-chemistry/povscript+/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/povscript+/metadata.xml +++ b/sci-chemistry/povscript+/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/prekin/metadata.xml b/sci-chemistry/prekin/metadata.xml index 9ac9ffdb3a41..9730805ca481 100644 --- a/sci-chemistry/prekin/metadata.xml +++ b/sci-chemistry/prekin/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/probe/metadata.xml b/sci-chemistry/probe/metadata.xml index e42d0af60f42..81cadec14597 100644 --- a/sci-chemistry/probe/metadata.xml +++ b/sci-chemistry/probe/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/procheck/metadata.xml b/sci-chemistry/procheck/metadata.xml index b3618ba38c1c..3f9e558188f1 100644 --- a/sci-chemistry/procheck/metadata.xml +++ b/sci-chemistry/procheck/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/prodecomp/metadata.xml b/sci-chemistry/prodecomp/metadata.xml index a91e9092dc52..9b377796e6b4 100644 --- a/sci-chemistry/prodecomp/metadata.xml +++ b/sci-chemistry/prodecomp/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/propka/metadata.xml b/sci-chemistry/propka/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/propka/metadata.xml +++ b/sci-chemistry/propka/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/propka/propka-3.1_p140511.ebuild b/sci-chemistry/propka/propka-3.1_p140511.ebuild index d390752866d6..0a772f6cc8d4 100644 --- a/sci-chemistry/propka/propka-3.1_p140511.ebuild +++ b/sci-chemistry/propka/propka-3.1_p140511.ebuild @@ -10,7 +10,7 @@ inherit distutils-r1 DESCRIPTION="Prediction of the pKa values of ionizable groups in proteins and protein-ligand complexes" HOMEPAGE="http://propka.ki.ku.dk/" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz" SLOT="0" LICENSE="all-rights-reserved" diff --git a/sci-chemistry/psi/metadata.xml b/sci-chemistry/psi/metadata.xml index 3774ad2a405f..40376c5cf96a 100644 --- a/sci-chemistry/psi/metadata.xml +++ b/sci-chemistry/psi/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <upstream> diff --git a/sci-chemistry/pymol-apbs-plugin/metadata.xml b/sci-chemistry/pymol-apbs-plugin/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/pymol-apbs-plugin/metadata.xml +++ b/sci-chemistry/pymol-apbs-plugin/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/pymol-plugins-bni-tools/metadata.xml b/sci-chemistry/pymol-plugins-bni-tools/metadata.xml index c4982f1db5fb..d6394ab3177e 100644 --- a/sci-chemistry/pymol-plugins-bni-tools/metadata.xml +++ b/sci-chemistry/pymol-plugins-bni-tools/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/pymol-plugins-caver/metadata.xml b/sci-chemistry/pymol-plugins-caver/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/pymol-plugins-caver/metadata.xml +++ b/sci-chemistry/pymol-plugins-caver/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/pymol-plugins-dssp/metadata.xml b/sci-chemistry/pymol-plugins-dssp/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/pymol-plugins-dssp/metadata.xml +++ b/sci-chemistry/pymol-plugins-dssp/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430-r1.ebuild b/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430-r1.ebuild index bc129c005d87..a27eea7789d6 100644 --- a/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430-r1.ebuild +++ b/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430-r1.ebuild @@ -10,7 +10,7 @@ inherit python-r1 DESCRIPTION="DSSP Plugin for PyMOL" HOMEPAGE="http://www.biotec.tu-dresden.de/~hongboz/dssp_pymol/dssp_pymol.html" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.py.xz" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.py.xz" SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" diff --git a/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430.ebuild b/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430.ebuild index 4bdb53a1019e..9a85ed05c89b 100644 --- a/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430.ebuild +++ b/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430.ebuild @@ -12,7 +12,7 @@ inherit python DESCRIPTION="DSSP Plugin for PyMOL" HOMEPAGE="http://www.biotec.tu-dresden.de/~hongboz/dssp_pymol/dssp_pymol.html" -SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.py.xz" +SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.py.xz" SLOT="0" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" diff --git a/sci-chemistry/pymol-plugins-dynamics/metadata.xml b/sci-chemistry/pymol-plugins-dynamics/metadata.xml index 78402e14de8d..83a9bec75c35 100644 --- a/sci-chemistry/pymol-plugins-dynamics/metadata.xml +++ b/sci-chemistry/pymol-plugins-dynamics/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/pymol-plugins-emovie/metadata.xml b/sci-chemistry/pymol-plugins-emovie/metadata.xml index 18330bb401f1..db4994c26988 100644 --- a/sci-chemistry/pymol-plugins-emovie/metadata.xml +++ b/sci-chemistry/pymol-plugins-emovie/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/pymol-plugins-msms/metadata.xml b/sci-chemistry/pymol-plugins-msms/metadata.xml index c6f92c968349..12b4df0f073e 100644 --- a/sci-chemistry/pymol-plugins-msms/metadata.xml +++ b/sci-chemistry/pymol-plugins-msms/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/pymol-plugins-promol/metadata.xml b/sci-chemistry/pymol-plugins-promol/metadata.xml index 4a00a64b40ae..d3a09d38e189 100644 --- a/sci-chemistry/pymol-plugins-promol/metadata.xml +++ b/sci-chemistry/pymol-plugins-promol/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer> <email>jlec@gentoo.org</email> diff --git a/sci-chemistry/pymol-plugins-psico/metadata.xml b/sci-chemistry/pymol-plugins-psico/metadata.xml index 3eff7c70cfe7..4c9c6994c05c 100644 --- a/sci-chemistry/pymol-plugins-psico/metadata.xml +++ b/sci-chemistry/pymol-plugins-psico/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/pymol/metadata.xml b/sci-chemistry/pymol/metadata.xml index ace2d8e58ce8..df6abab39195 100644 --- a/sci-chemistry/pymol/metadata.xml +++ b/sci-chemistry/pymol/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/pymol/pymol-1.7.0.1.ebuild b/sci-chemistry/pymol/pymol-1.7.0.1.ebuild index fbd2fd858c86..d71b5abbd9e3 100644 --- a/sci-chemistry/pymol/pymol-1.7.0.1.ebuild +++ b/sci-chemistry/pymol/pymol-1.7.0.1.ebuild @@ -12,8 +12,8 @@ inherit distutils-r1 fdo-mime versionator DESCRIPTION="A Python-extensible molecular graphics system" HOMEPAGE="http://www.pymol.org/" SRC_URI=" - http://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz - http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz + https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz + https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz " # mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 diff --git a/sci-chemistry/pymol/pymol-1.7.4.0.ebuild b/sci-chemistry/pymol/pymol-1.7.4.0.ebuild index 20f49ba45a55..483660011e52 100644 --- a/sci-chemistry/pymol/pymol-1.7.4.0.ebuild +++ b/sci-chemistry/pymol/pymol-1.7.4.0.ebuild @@ -12,8 +12,8 @@ inherit distutils-r1 fdo-mime versionator DESCRIPTION="A Python-extensible molecular graphics system" HOMEPAGE="http://www.pymol.org/" SRC_URI=" - http://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz - http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz + https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz + https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz " # mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 # git archive -v --prefix=${P}/ master -o ${P}.tar.xz diff --git a/sci-chemistry/pymol/pymol-1.7.6.0.ebuild b/sci-chemistry/pymol/pymol-1.7.6.0.ebuild index d3ec32637cee..4c0590e1e5e2 100644 --- a/sci-chemistry/pymol/pymol-1.7.6.0.ebuild +++ b/sci-chemistry/pymol/pymol-1.7.6.0.ebuild @@ -12,8 +12,8 @@ inherit distutils-r1 fdo-mime flag-o-matic versionator DESCRIPTION="A Python-extensible molecular graphics system" HOMEPAGE="http://www.pymol.org/" SRC_URI=" - http://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz - http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz + https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz + https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz " # mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 # git archive -v --prefix=${P}/ master -o ${P}.tar.xz diff --git a/sci-chemistry/rasmol/metadata.xml b/sci-chemistry/rasmol/metadata.xml index b06ec8f7a2fa..31c6764061fc 100644 --- a/sci-chemistry/rasmol/metadata.xml +++ b/sci-chemistry/rasmol/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <upstream> diff --git a/sci-chemistry/raster3d/metadata.xml b/sci-chemistry/raster3d/metadata.xml index 2a6e4b56f965..cf38b1697e56 100644 --- a/sci-chemistry/raster3d/metadata.xml +++ b/sci-chemistry/raster3d/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <upstream> diff --git a/sci-chemistry/reduce/metadata.xml b/sci-chemistry/reduce/metadata.xml index e42d0af60f42..81cadec14597 100644 --- a/sci-chemistry/reduce/metadata.xml +++ b/sci-chemistry/reduce/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/refmac/metadata.xml b/sci-chemistry/refmac/metadata.xml index c0432fefe855..07b19ef83cd8 100644 --- a/sci-chemistry/refmac/metadata.xml +++ b/sci-chemistry/refmac/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/relax/metadata.xml b/sci-chemistry/relax/metadata.xml index 617e574f7c34..868c2bce86f7 100644 --- a/sci-chemistry/relax/metadata.xml +++ b/sci-chemistry/relax/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/scala/metadata.xml b/sci-chemistry/scala/metadata.xml index 2c9359ab3513..6cd1681d4e31 100644 --- a/sci-chemistry/scala/metadata.xml +++ b/sci-chemistry/scala/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/sfcheck/metadata.xml b/sci-chemistry/sfcheck/metadata.xml index 9ac9ffdb3a41..9730805ca481 100644 --- a/sci-chemistry/sfcheck/metadata.xml +++ b/sci-chemistry/sfcheck/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/shelx/metadata.xml b/sci-chemistry/shelx/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/shelx/metadata.xml +++ b/sci-chemistry/shelx/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/solve-resolve-bin/metadata.xml b/sci-chemistry/solve-resolve-bin/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/solve-resolve-bin/metadata.xml +++ b/sci-chemistry/solve-resolve-bin/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/sparky/metadata.xml b/sci-chemistry/sparky/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/sparky/metadata.xml +++ b/sci-chemistry/sparky/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/suitename/metadata.xml b/sci-chemistry/suitename/metadata.xml index 06ac91e5fb9e..1b3f34778ebc 100644 --- a/sci-chemistry/suitename/metadata.xml +++ b/sci-chemistry/suitename/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/surf/metadata.xml b/sci-chemistry/surf/metadata.xml index 9ac9ffdb3a41..9730805ca481 100644 --- a/sci-chemistry/surf/metadata.xml +++ b/sci-chemistry/surf/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/theseus/metadata.xml b/sci-chemistry/theseus/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/theseus/metadata.xml +++ b/sci-chemistry/theseus/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/threeV/metadata.xml b/sci-chemistry/threeV/metadata.xml index 043cc7527474..fd3a748e4cdf 100644 --- a/sci-chemistry/threeV/metadata.xml +++ b/sci-chemistry/threeV/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/tinker/metadata.xml b/sci-chemistry/tinker/metadata.xml index e42d0af60f42..81cadec14597 100644 --- a/sci-chemistry/tinker/metadata.xml +++ b/sci-chemistry/tinker/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/tm-align/metadata.xml b/sci-chemistry/tm-align/metadata.xml index 1e724495b8e2..1501fd807da9 100644 --- a/sci-chemistry/tm-align/metadata.xml +++ b/sci-chemistry/tm-align/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/viewmol/metadata.xml b/sci-chemistry/viewmol/metadata.xml index c23d7012cd04..e342134e97fc 100644 --- a/sci-chemistry/viewmol/metadata.xml +++ b/sci-chemistry/viewmol/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <upstream> diff --git a/sci-chemistry/vmd/metadata.xml b/sci-chemistry/vmd/metadata.xml index 4b17d8d6b913..4d4cc470059e 100644 --- a/sci-chemistry/vmd/metadata.xml +++ b/sci-chemistry/vmd/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <maintainer> <email>alexxy@gentoo.org</email> diff --git a/sci-chemistry/vmd/vmd-1.9.2.ebuild b/sci-chemistry/vmd/vmd-1.9.2.ebuild index 78e084df58ea..c9647a194b7e 100644 --- a/sci-chemistry/vmd/vmd-1.9.2.ebuild +++ b/sci-chemistry/vmd/vmd-1.9.2.ebuild @@ -11,7 +11,7 @@ inherit cuda eutils flag-o-matic multilib prefix python-single-r1 toolchain-func DESCRIPTION="Visual Molecular Dynamics" HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/" SRC_URI=" - http://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz + https://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz ${P}.src.tar.gz" SLOT="0" @@ -59,7 +59,7 @@ pkg_nofetch() { elog "Please download ${P}.src.tar.gz from" elog "${VMD_DOWNLOAD}" elog "after agreeing to the license and get" - elog "http://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz" + elog "https://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz" elog "Place both in ${DISTDIR}" } diff --git a/sci-chemistry/votca-csg/metadata.xml b/sci-chemistry/votca-csg/metadata.xml index a7bc0762f8d6..b05af7b7abfc 100644 --- a/sci-chemistry/votca-csg/metadata.xml +++ b/sci-chemistry/votca-csg/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/votca-csgapps/metadata.xml b/sci-chemistry/votca-csgapps/metadata.xml index 40959c87ed5b..4dd72cf88104 100644 --- a/sci-chemistry/votca-csgapps/metadata.xml +++ b/sci-chemistry/votca-csgapps/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/wxmacmolplt/metadata.xml b/sci-chemistry/wxmacmolplt/metadata.xml index cd9831eb3c5f..dd7625c3508b 100644 --- a/sci-chemistry/wxmacmolplt/metadata.xml +++ b/sci-chemistry/wxmacmolplt/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <longdescription> diff --git a/sci-chemistry/xds-bin/metadata.xml b/sci-chemistry/xds-bin/metadata.xml index 51fdedab1b38..a0eaf4634a96 100644 --- a/sci-chemistry/xds-bin/metadata.xml +++ b/sci-chemistry/xds-bin/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/xdsgui/metadata.xml b/sci-chemistry/xdsgui/metadata.xml index f80752c40789..20002706161b 100644 --- a/sci-chemistry/xdsgui/metadata.xml +++ b/sci-chemistry/xdsgui/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/xdsi/metadata.xml b/sci-chemistry/xdsi/metadata.xml index 431fb2be13b4..5fa279c866d3 100644 --- a/sci-chemistry/xdsi/metadata.xml +++ b/sci-chemistry/xdsi/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/xdsstat-bin/metadata.xml b/sci-chemistry/xdsstat-bin/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/xdsstat-bin/metadata.xml +++ b/sci-chemistry/xdsstat-bin/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> diff --git a/sci-chemistry/xia2/metadata.xml b/sci-chemistry/xia2/metadata.xml index 9ac9ffdb3a41..9730805ca481 100644 --- a/sci-chemistry/xia2/metadata.xml +++ b/sci-chemistry/xia2/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> </pkgmetadata> diff --git a/sci-chemistry/xyza2pipe/metadata.xml b/sci-chemistry/xyza2pipe/metadata.xml index ae9ec7c5f6a4..27367a8f876a 100644 --- a/sci-chemistry/xyza2pipe/metadata.xml +++ b/sci-chemistry/xyza2pipe/metadata.xml @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> <herd>sci-chemistry</herd> <maintainer> |