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authorAaron Bauman <bman@gentoo.org>2020-07-03 22:22:37 -0400
committerAaron Bauman <bman@gentoo.org>2020-07-03 22:24:06 -0400
commit17ed872c6334185fdebf3d60b2aa219fc1fe7516 (patch)
tree12e8c60e602df8f5c29d00e701eab0a16ede9847 /sci-chemistry/pymol-plugins-msms
parentmedia-plugins/kodi-pvr-nextpvr: 3.3.21 version bump (diff)
downloadgentoo-17ed872c6334185fdebf3d60b2aa219fc1fe7516.tar.gz
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*/*: drop last-rited py2 packages
Signed-off-by: Aaron Bauman <bman@gentoo.org>
Diffstat (limited to 'sci-chemistry/pymol-plugins-msms')
-rw-r--r--sci-chemistry/pymol-plugins-msms/Manifest1
-rw-r--r--sci-chemistry/pymol-plugins-msms/files/100415-msms.patch33
-rw-r--r--sci-chemistry/pymol-plugins-msms/metadata.xml17
-rw-r--r--sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild43
4 files changed, 0 insertions, 94 deletions
diff --git a/sci-chemistry/pymol-plugins-msms/Manifest b/sci-chemistry/pymol-plugins-msms/Manifest
deleted file mode 100644
index 3e5c1d3ef747..000000000000
--- a/sci-chemistry/pymol-plugins-msms/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST pymol-plugins-msms-100415.py 62320 BLAKE2B 2778221bd0138764b9f0b75202de8bc46d71005b26d0e23faba582d5f49fc0c3edca04d0ffcddf8f3be541a2142b739afe8a2904912a29d2443d9e6974f453a5 SHA512 924d89836f92d0be52d7534cbe6dc9338dac1c2263a51900ab62dbe96e4f54f565dbaa6bdf51236d8ea8e9042aa09283a117f5285561b252177a5a32f3876489
diff --git a/sci-chemistry/pymol-plugins-msms/files/100415-msms.patch b/sci-chemistry/pymol-plugins-msms/files/100415-msms.patch
deleted file mode 100644
index 0d26fb31c5f1..000000000000
--- a/sci-chemistry/pymol-plugins-msms/files/100415-msms.patch
+++ /dev/null
@@ -1,33 +0,0 @@
- pymol-plugins-msms-100415.py | 18 ++++++++++--------
- 1 files changed, 10 insertions(+), 8 deletions(-)
-
-diff --git a/pymol-plugins-msms-100415.py b/pymol-plugins-msms-100415.py
-index 725934d..7ea00bf 100644
---- a/pymol-plugins-msms-100415.py
-+++ b/pymol-plugins-msms-100415.py
-@@ -99,15 +99,17 @@ class MSMSPlugin:
- self.cleanup_saved_pymol_sel.set(True) # by default, clean up
-
- self.pdb_fn.set('')
-- if 'MSMS_BIN' in os.environ:
-- if VERBOSE: print 'Found MSMS_BIN in environmental variables', os.environ['MSMS_BIN']
-- self.msms_bin.set(os.environ['MSMS_BIN'])
-- else:
-- if VERBOSE: print 'MSMS_BIN not found in environmental variables.'
-- self.msms_bin.set('')
-+ self.msms_bin.set('GENTOOMSMS')
-+## if 'MSMS_BIN' in os.environ:
-+## if VERBOSE: print 'Found MSMS_BIN in environmental variables', os.environ['MSMS_BIN']
-+## self.msms_bin.set(os.environ['MSMS_BIN'])
-+## else:
-+## if VERBOSE: print 'MSMS_BIN not found in environmental variables.'
-+## self.msms_bin.set('')
- ## self.pdb2xyzr_bin.set('')
-- if 'PDB2XYZRN' in os.environ: self.pdb2xyzrn_bin.set(os.environ['PDB2XYZRN'])
-- else: self.pdb2xyzrn_bin.set('')
-+ self.pdb2xyzrn_bin.set('GENTOOXYZRN')
-+## if 'PDB2XYZRN' in os.environ: self.pdb2xyzrn_bin.set(os.environ['PDB2XYZRN'])
-+## else: self.pdb2xyzrn_bin.set('')
- self.tmp_dir.set('/tmp')
- self.cleanup_msms_output = Tkinter.BooleanVar()
- self.cleanup_msms_output.set(True) # by default, clean up msms output
diff --git a/sci-chemistry/pymol-plugins-msms/metadata.xml b/sci-chemistry/pymol-plugins-msms/metadata.xml
deleted file mode 100644
index 214696c4a1f7..000000000000
--- a/sci-chemistry/pymol-plugins-msms/metadata.xml
+++ /dev/null
@@ -1,17 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
- <longdescription>
-MSMS is an excellent tool for computing protein solvent excluded surface (SES).
-MSMS Plugin for PyMOL provides a graphical user interface for running MSMS and
-displaying its results in PyMOL.
-
-1. Citation for this plugin:
- Hongbo Zhu. MSMS plugin for PyMOL, 2010, Biotechnology Center (BIOTEC), TU Dresden.
-2. Citation for PyMOL can be found at: http://pymol.sourceforge.net/faq.html#CITE
-</longdescription>
-</pkgmetadata>
diff --git a/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild b/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild
deleted file mode 100644
index 33c7dbf9be7d..000000000000
--- a/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils python-r1
-
-DESCRIPTION="GUI for MSMS and displaying its results in PyMOL"
-HOMEPAGE="http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/msms_pymol.html"
-SRC_URI="http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/pymol_script/msms_pymol.py -> ${P}.py"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-LICENSE="BSD pymol"
-IUSE=""
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
- ${PYTHON_DEPS}
- sci-chemistry/msms-bin
- sci-chemistry/pymol[${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}"
-
-src_unpack() {
- mkdir "${S}" || die
- cp "${DISTDIR}"/${A} "${S}/" || die
-}
-
-src_prepare() {
- epatch "${FILESDIR}"/${PV}-msms.patch
- sed \
- -e "s:GENTOOMSMS:${EPREFIX}/opt/bin/msms:g" \
- -e "s:GENTOOXYZRN:${EPREFIX}/usr/bin/pdb_to_xyzrn:g" \
- -i ${A} || die
-}
-
-src_install() {
- python_moduleinto pmg_tk/startup
- python_foreach_impl python_domodule ${P}.py
- python_foreach_impl python_optimize
-}