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author | Aaron Bauman <bman@gentoo.org> | 2020-07-03 22:22:37 -0400 |
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committer | Aaron Bauman <bman@gentoo.org> | 2020-07-03 22:24:06 -0400 |
commit | 17ed872c6334185fdebf3d60b2aa219fc1fe7516 (patch) | |
tree | 12e8c60e602df8f5c29d00e701eab0a16ede9847 /sci-chemistry/pymol-plugins-msms | |
parent | media-plugins/kodi-pvr-nextpvr: 3.3.21 version bump (diff) | |
download | gentoo-17ed872c6334185fdebf3d60b2aa219fc1fe7516.tar.gz gentoo-17ed872c6334185fdebf3d60b2aa219fc1fe7516.tar.bz2 gentoo-17ed872c6334185fdebf3d60b2aa219fc1fe7516.zip |
*/*: drop last-rited py2 packages
Signed-off-by: Aaron Bauman <bman@gentoo.org>
Diffstat (limited to 'sci-chemistry/pymol-plugins-msms')
4 files changed, 0 insertions, 94 deletions
diff --git a/sci-chemistry/pymol-plugins-msms/Manifest b/sci-chemistry/pymol-plugins-msms/Manifest deleted file mode 100644 index 3e5c1d3ef747..000000000000 --- a/sci-chemistry/pymol-plugins-msms/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST pymol-plugins-msms-100415.py 62320 BLAKE2B 2778221bd0138764b9f0b75202de8bc46d71005b26d0e23faba582d5f49fc0c3edca04d0ffcddf8f3be541a2142b739afe8a2904912a29d2443d9e6974f453a5 SHA512 924d89836f92d0be52d7534cbe6dc9338dac1c2263a51900ab62dbe96e4f54f565dbaa6bdf51236d8ea8e9042aa09283a117f5285561b252177a5a32f3876489 diff --git a/sci-chemistry/pymol-plugins-msms/files/100415-msms.patch b/sci-chemistry/pymol-plugins-msms/files/100415-msms.patch deleted file mode 100644 index 0d26fb31c5f1..000000000000 --- a/sci-chemistry/pymol-plugins-msms/files/100415-msms.patch +++ /dev/null @@ -1,33 +0,0 @@ - pymol-plugins-msms-100415.py | 18 ++++++++++-------- - 1 files changed, 10 insertions(+), 8 deletions(-) - -diff --git a/pymol-plugins-msms-100415.py b/pymol-plugins-msms-100415.py -index 725934d..7ea00bf 100644 ---- a/pymol-plugins-msms-100415.py -+++ b/pymol-plugins-msms-100415.py -@@ -99,15 +99,17 @@ class MSMSPlugin: - self.cleanup_saved_pymol_sel.set(True) # by default, clean up - - self.pdb_fn.set('') -- if 'MSMS_BIN' in os.environ: -- if VERBOSE: print 'Found MSMS_BIN in environmental variables', os.environ['MSMS_BIN'] -- self.msms_bin.set(os.environ['MSMS_BIN']) -- else: -- if VERBOSE: print 'MSMS_BIN not found in environmental variables.' -- self.msms_bin.set('') -+ self.msms_bin.set('GENTOOMSMS') -+## if 'MSMS_BIN' in os.environ: -+## if VERBOSE: print 'Found MSMS_BIN in environmental variables', os.environ['MSMS_BIN'] -+## self.msms_bin.set(os.environ['MSMS_BIN']) -+## else: -+## if VERBOSE: print 'MSMS_BIN not found in environmental variables.' -+## self.msms_bin.set('') - ## self.pdb2xyzr_bin.set('') -- if 'PDB2XYZRN' in os.environ: self.pdb2xyzrn_bin.set(os.environ['PDB2XYZRN']) -- else: self.pdb2xyzrn_bin.set('') -+ self.pdb2xyzrn_bin.set('GENTOOXYZRN') -+## if 'PDB2XYZRN' in os.environ: self.pdb2xyzrn_bin.set(os.environ['PDB2XYZRN']) -+## else: self.pdb2xyzrn_bin.set('') - self.tmp_dir.set('/tmp') - self.cleanup_msms_output = Tkinter.BooleanVar() - self.cleanup_msms_output.set(True) # by default, clean up msms output diff --git a/sci-chemistry/pymol-plugins-msms/metadata.xml b/sci-chemistry/pymol-plugins-msms/metadata.xml deleted file mode 100644 index 214696c4a1f7..000000000000 --- a/sci-chemistry/pymol-plugins-msms/metadata.xml +++ /dev/null @@ -1,17 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> - <longdescription> -MSMS is an excellent tool for computing protein solvent excluded surface (SES). -MSMS Plugin for PyMOL provides a graphical user interface for running MSMS and -displaying its results in PyMOL. - -1. Citation for this plugin: - Hongbo Zhu. MSMS plugin for PyMOL, 2010, Biotechnology Center (BIOTEC), TU Dresden. -2. Citation for PyMOL can be found at: http://pymol.sourceforge.net/faq.html#CITE -</longdescription> -</pkgmetadata> diff --git a/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild b/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild deleted file mode 100644 index 33c7dbf9be7d..000000000000 --- a/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit eutils python-r1 - -DESCRIPTION="GUI for MSMS and displaying its results in PyMOL" -HOMEPAGE="http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/msms_pymol.html" -SRC_URI="http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/pymol_script/msms_pymol.py -> ${P}.py" - -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -LICENSE="BSD pymol" -IUSE="" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND=" - ${PYTHON_DEPS} - sci-chemistry/msms-bin - sci-chemistry/pymol[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND}" - -src_unpack() { - mkdir "${S}" || die - cp "${DISTDIR}"/${A} "${S}/" || die -} - -src_prepare() { - epatch "${FILESDIR}"/${PV}-msms.patch - sed \ - -e "s:GENTOOMSMS:${EPREFIX}/opt/bin/msms:g" \ - -e "s:GENTOOXYZRN:${EPREFIX}/usr/bin/pdb_to_xyzrn:g" \ - -i ${A} || die -} - -src_install() { - python_moduleinto pmg_tk/startup - python_foreach_impl python_domodule ${P}.py - python_foreach_impl python_optimize -} |