diff options
| author |   David Seifert <soap@gentoo.org> | 2016-03-28 01:52:51 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2016-03-28 01:52:51 +0200 |
| commit | deaa21ff2b928318d0e1b8fe45aa404411f08086 (patch) | |
| tree | 34e8eebe6e16a82472bbed0a053f0210b4a98246 /sci-biology/samtools | |
| parent | sci-biology/samtools: Add elog message discouraging direct use (diff) | |
| download | gentoo-deaa21ff2b928318d0e1b8fe45aa404411f08086.tar.gz gentoo-deaa21ff2b928318d0e1b8fe45aa404411f08086.tar.bz2 gentoo-deaa21ff2b928318d0e1b8fe45aa404411f08086.zip | |
sci-biology/samtools: Move to SLOT="0.1-legacy" for future legacy versions
Package-Manager: portage-2.2.28
Diffstat (limited to 'sci-biology/samtools')
| -rw-r--r-- | sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch | 20 | ||||
| -rw-r--r-- | sci-biology/samtools/samtools-0.1.20-r1.ebuild (renamed from sci-biology/samtools/samtools-0.1.20.ebuild) | 2 |
2 files changed, 11 insertions, 11 deletions
diff --git a/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch b/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch index dfdd890b1087..eb9f6934a96f 100644 --- a/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch +++ b/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch @@ -75,15 +75,15 @@ .PHONY:all-recur lib-recur clean-recur cleanlocal-recur install-recur -lib:libbam.a -+lib:libbam-legacy.a ++lib:libbam-0.1-legacy.a -libbam.a:$(LOBJS) -+libbam-legacy.a:$(LOBJS) ++libbam-0.1-legacy.a:$(LOBJS) $(AR) -csru $@ $(LOBJS) samtools:lib-recur $(AOBJS) - $(CC) $(CFLAGS) -o $@ $(AOBJS) $(LDFLAGS) libbam.a -Lbcftools -lbcf $(LIBPATH) $(LIBCURSES) -lm -lz -lpthread -+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(AOBJS) libbam-legacy.a -Lbcftools -lbcf $(LIBPATH) $(LIBCURSES) -lm -lz -lpthread ++ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(AOBJS) -L. -lbam-0.1-legacy -Lbcftools -lbcf $(LIBPATH) $(LIBCURSES) -lm -lz -lpthread razip:razip.o razf.o $(KNETFILE_O) - $(CC) $(CFLAGS) -o $@ $^ -lz @@ -105,21 +105,21 @@ -libbam.1.dylib-local:$(LOBJS) - libtool -dynamic $(LOBJS) -o libbam.1.dylib -lc -lz -+libbam-legacy.1.dylib-local:$(LOBJS) -+ libtool -dynamic $(LOBJS) -o libbam-legacy.1.dylib -lc -lz ++libbam-0.1-legacy.1.dylib-local:$(LOBJS) ++ libtool -dynamic $(LOBJS) -o libbam-0.1-legacy.1.dylib -lc -lz -libbam.so.1-local:$(LOBJS) - $(CC) -shared -Wl,-soname,libbam.so -o libbam.so.1 $(LOBJS) -lc -lz -+libbam-legacy.so.1-local:$(LOBJS) -+ $(CC) $(LDFLAGS) -shared -Wl,-soname,libbam-legacy.so -o libbam-legacy.so.1 $(LOBJS) -lc -lz -lm -lpthread ++libbam-0.1-legacy.so.1-local:$(LOBJS) ++ $(CC) $(LDFLAGS) -shared -Wl,-soname,libbam-0.1-legacy.so -o libbam-0.1-legacy.so.1 $(LOBJS) -lc -lz -lm -lpthread dylib: @$(MAKE) cleanlocal; \ case `uname` in \ - Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.so.1-local;; \ - Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.1.dylib-local;; \ -+ Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam-legacy.so.1-local;; \ -+ Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam-legacy.1.dylib-local;; \ ++ Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam-0.1-legacy.so.1-local;; \ ++ Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam-0.1-legacy.1.dylib-local;; \ *) echo 'Unknown OS';; \ esac @@ -162,7 +162,7 @@ bamcheck:bamcheck.o - $(CC) $(CFLAGS) -o $@ bamcheck.o -L.. -lm -lbam -lpthread -lz -+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ bamcheck.o -L.. -lm -lbam-legacy -lpthread -lz ++ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ bamcheck.o -L.. -lm -lbam-0.1-legacy -lpthread -lz bamcheck.o:bamcheck.c ../faidx.h ../khash.h ../sam.h ../razf.h $(CC) $(CFLAGS) -c -I.. -o $@ bamcheck.c diff --git a/sci-biology/samtools/samtools-0.1.20.ebuild b/sci-biology/samtools/samtools-0.1.20-r1.ebuild index 3ee9956f3759..744d15ff5771 100644 --- a/sci-biology/samtools/samtools-0.1.20.ebuild +++ b/sci-biology/samtools/samtools-0.1.20-r1.ebuild @@ -13,7 +13,7 @@ HOMEPAGE="http://samtools.sourceforge.net/" SRC_URI="https://github.com/samtools/samtools/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="MIT" -SLOT="legacy" +SLOT="0.1-legacy" KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" IUSE="examples" |