proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

3 files changed, 69 insertions, 0 deletions

diff --git a/sci-biology/embassy/embassy-6.0.1.ebuild b/sci-biology/embassy/embassy-6.0.1.ebuild
new file mode 100644
index 000000000000..3c7c37b20ff6
--- /dev/null
+++ b/sci-biology/embassy/embassy-6.0.1.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+DESCRIPTION="A meta-package for installing all EMBASSY packages (EMBOSS add-ons)"
+HOMEPAGE="http://www.emboss.org/"
+SRC_URI=""
+LICENSE="GPL-2 freedist"
+
+SLOT="0"
+KEYWORDS="amd64 ~ppc x86"
+IUSE=""
+
+RDEPEND="!<sci-biology/emboss-6.0.1
+	!sci-biology/embassy-meme
+	!sci-biology/embassy-phylip
+	~sci-biology/emboss-6.0.1
+	=sci-biology/embassy-cbstools-1.0.0
+	=sci-biology/embassy-domainatrix-0.1.0-r3
+	=sci-biology/embassy-domalign-0.1.0-r3
+	=sci-biology/embassy-domsearch-0.1.0-r3
+	=sci-biology/embassy-emnu-1.05-r5
+	=sci-biology/embassy-esim4-1.0.0-r5
+	=sci-biology/embassy-hmmer-2.3.2-r2
+	=sci-biology/embassy-iprscan-4.3.1
+	=sci-biology/embassy-memenew-0.1.0-r1
+	=sci-biology/embassy-mira-2.8.2
+	=sci-biology/embassy-mse-1.0.0-r6
+	=sci-biology/embassy-phylipnew-3.67
+	=sci-biology/embassy-signature-0.1.0-r3
+	=sci-biology/embassy-structure-0.1.0-r3
+	=sci-biology/embassy-topo-1.0.0-r5
+	=sci-biology/embassy-vienna-1.7.2"
diff --git a/sci-biology/embassy/embassy-6.6.0.ebuild b/sci-biology/embassy/embassy-6.6.0.ebuild
new file mode 100644
index 000000000000..d663e22efda3
--- /dev/null
+++ b/sci-biology/embassy/embassy-6.6.0.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+DESCRIPTION="A meta-package for installing all EMBASSY packages (EMBOSS add-ons)"
+HOMEPAGE="http://emboss.sourceforge.net/embassy/"
+
+LICENSE+=" freedist"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~x86-linux ~ppc-macos"
+
+RDEPEND+="
+	>=sci-biology/embassy-cbstools-1.0.0.650
+	>=sci-biology/embassy-clustalomega-1.1.0
+	>=sci-biology/embassy-domainatrix-0.1.650
+	>=sci-biology/embassy-domalign-0.1.650
+	>=sci-biology/embassy-domsearch-0.1.650
+	>=sci-biology/embassy-emnu-1.05.650
+	>=sci-biology/embassy-esim4-1.0.0.650
+	>=sci-biology/embassy-hmmer-2.3.2.650
+	>=sci-biology/embassy-iprscan-4.3.1.650
+	>=sci-biology/embassy-meme-4.7.650
+	>=sci-biology/embassy-mse-3.0.0.650
+	>=sci-biology/embassy-phylipnew-3.69.650
+	>=sci-biology/embassy-signature-0.1.650
+	>=sci-biology/embassy-structure-0.1.650
+	>=sci-biology/embassy-topo-2.0.650
+	>=sci-biology/embassy-vienna-1.7.2.650
+"
diff --git a/sci-biology/embassy/metadata.xml b/sci-biology/embassy/metadata.xml
new file mode 100644
index 000000000000..f17a827e3101
--- /dev/null
+++ b/sci-biology/embassy/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+</pkgmetadata>