dev-lang/julia: version bump to 0.4.6

Package-Manager: portage-2.2.28

3 files changed, 244 insertions, 0 deletions

diff --git a/dev-lang/julia/Manifest b/dev-lang/julia/Manifest
index 034069d226ec..07327ed17aa9 100644
--- a/dev-lang/julia/Manifest
+++ b/dev-lang/julia/Manifest
@@ -1,2 +1,4 @@
 DIST julia-0.4.3-bundled.tar.gz 2678787 SHA256 9451160add4c1fa537762627abcd3dd5fecca9ce44f71c4140d89a4bb6b23392 SHA512 919ca7b99a6eb17a651ce24fe07e5c12bfcee54ce86fac8f744765195002e8f3330df9059fadd5af3408c1f7e067e247ad4bb135879ae4ae43e1457245f90db9 WHIRLPOOL 94bb022d4f1586dfdc2f52286db423cb09898a3a5dff2f2086ca111b9117dca808758351dada23cea1056a8e5c3b33f6919410c34af96a92a4a9f8b0e0758783
 DIST julia-0.4.3.tar.gz 5563437 SHA256 b2c12b267c0d8eb380f6628e7be48c7ec46d2cfb5c585ecb3ca4cc442650e4e0 SHA512 7d5180c69573452c00563c7b98514fc9e4f0f70762912cf4f90cbf632e4b23ec149295ff1955164833ab94efd1feab992067996e3d60f795850542cf2f18f67f WHIRLPOOL 75c3ebf8cb1af67158896872e098bf66a8073eba3daf6cf5903471d34201e1605458e59f14c19ff5177413daee5aac102ec69a0afe9a93a219698a4640acaf33
+DIST julia-0.4.6-bundled.tar.gz 2678787 SHA256 9451160add4c1fa537762627abcd3dd5fecca9ce44f71c4140d89a4bb6b23392 SHA512 919ca7b99a6eb17a651ce24fe07e5c12bfcee54ce86fac8f744765195002e8f3330df9059fadd5af3408c1f7e067e247ad4bb135879ae4ae43e1457245f90db9 WHIRLPOOL 94bb022d4f1586dfdc2f52286db423cb09898a3a5dff2f2086ca111b9117dca808758351dada23cea1056a8e5c3b33f6919410c34af96a92a4a9f8b0e0758783
+DIST julia-0.4.6.tar.gz 5548248 SHA256 e5d12b5a8ddff0131e460612ecf222ddf16014fc64c4fc3d8b021da7ebbd9a9f SHA512 744fbae14f7b38d5f7ef1c39d05c66f42833ee0e07b3f4be2ae377f2c997872777c6f7e9e667f52e5a33879032b2d02d76b00fab59f81ba6552f1fd4165953da WHIRLPOOL 3403364fc13bd8012da1ee333cc51fd0a957e94920bbd3f951fad4a689469f514e19a661bf2bdfdd29afbcadac1c9d6948638fd9d4201780a1aa7c0fd2995dee
diff --git a/dev-lang/julia/files/julia-0.4.6-llvm-3.8.patch b/dev-lang/julia/files/julia-0.4.6-llvm-3.8.patch
new file mode 100644
index 000000000000..c301f964c2cd
--- /dev/null
+++ b/dev-lang/julia/files/julia-0.4.6-llvm-3.8.patch
@@ -0,0 +1,56 @@
+Description: LLVM 3.8 compatibility
+ These fixes come straight from upstream's git.
+Origin: Upstream, https://github.com/JuliaLang/julia/commit/b67609b988febe062e6709d8972c4f869c82cfc0
+Origin: Upstream, https://github.com/JuliaLang/julia/commit/3f6abadc9d12bb9d59ec775db4277b3841395d0b
+Origin: Upstream, https://github.com/JuliaLang/julia/commit/caf3c74426696d43101d9607b1a2cd3a5e05bc0f
+Author: Graham Inggs <ginggs@debian.org>
+Last-Update: 2016-02-03
+--- a/src/cgutils.cpp
++++ b/src/cgutils.cpp
+@@ -219,7 +219,11 @@
+         }
+     }
+ 
++#ifdef LLVM38
++    virtual Value *materializeDeclFor(Value *V)
++#else
+     virtual Value *materializeValueFor (Value *V)
++#endif
+     {
+         Function *F = dyn_cast<Function>(V);
+         if (F) {
+@@ -492,7 +496,11 @@
+ 
+     // now copy the module, since PM.run may modify it
+     ValueToValueMapTy VMap;
++#ifdef LLVM38
++    Module *clone = CloneModule(shadow_module, VMap).release();
++#else
+     Module *clone = CloneModule(shadow_module, VMap);
++#endif
+ #ifdef LLVM37
+     // Reset the target triple to make sure it matches the new target machine
+     clone->setTargetTriple(TM->getTargetTriple().str());
+--- a/src/intrinsics.cpp
++++ b/src/intrinsics.cpp
+@@ -780,12 +780,20 @@
+              jl_options.fast_math == JL_OPTIONS_FAST_MATH_ON)) {
+             FastMathFlags fmf;
+             fmf.setUnsafeAlgebra();
++#ifdef LLVM38
++            builder.setFastMathFlags(fmf);
++#else
+             builder.SetFastMathFlags(fmf);
++#endif
+         }
+     }
+     IRBuilder<>& operator()() const { return builder; }
+     ~math_builder() {
++#ifdef LLVM38
++        builder.setFastMathFlags(old_fmf);
++#else
+         builder.SetFastMathFlags(old_fmf);
++#endif
+     }
+ };
+ 
diff --git a/dev-lang/julia/julia-0.4.6.ebuild b/dev-lang/julia/julia-0.4.6.ebuild
new file mode 100644
index 000000000000..6f10200c9dad
--- /dev/null
+++ b/dev-lang/julia/julia-0.4.6.ebuild
@@ -0,0 +1,186 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+RESTRICT="test"
+
+inherit elisp-common eutils multilib pax-utils toolchain-funcs
+
+DESCRIPTION="High-performance programming language for technical computing"
+HOMEPAGE="http://julialang.org/"
+SRC_URI="
+	https://github.com/JuliaLang/${PN}/releases/download/v${PV}/${P}.tar.gz
+	https://dev.gentoo.org/~tamiko/distfiles/${P}-bundled.tar.gz
+"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="emacs"
+
+RDEPEND="
+	dev-lang/R:0=
+	dev-libs/double-conversion:0=
+	dev-libs/gmp:0=
+	dev-libs/libgit2:0=
+	dev-libs/mpfr:0=
+	dev-libs/openspecfun
+	sci-libs/arpack:0=
+	sci-libs/camd:0=
+	sci-libs/cholmod:0=
+	sci-libs/fftw:3.0=[threads]
+	sci-libs/openlibm:0=
+	sci-libs/spqr:0=
+	sci-libs/umfpack:0=
+	sci-mathematics/glpk:0=
+	>=sys-devel/llvm-3.5:0=
+	>=sys-libs/libunwind-1.1:7=
+	sys-libs/readline:0=
+	sys-libs/zlib:0=
+	virtual/blas
+	virtual/lapack
+	emacs? ( app-emacs/ess )"
+
+DEPEND="${RDEPEND}
+	dev-util/patchelf
+	virtual/pkgconfig"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-0.4.3-fix_build_system.patch
+	"${FILESDIR}"/${P}-llvm-3.8.patch
+)
+
+src_prepare() {
+	mv "${WORKDIR}"/bundled/dsfmt-2.2.3.tar.gz deps/ || die
+	mv "${WORKDIR}"/bundled/libuv-efb40768b7c7bd9f173a7868f74b92b1c5a61a0e.tar.gz deps/ || die
+	mv "${WORKDIR}"/bundled/pcre2-10.20.tar.bz2 deps/ || die
+	mv "${WORKDIR}"/bundled/Rmath-julia-0.1.tar.gz deps/ || die
+	mv "${WORKDIR}"/bundled/utf8proc-85789180158ac7fff85b9f008828d6ac44f072ea.tar.gz deps/ || die
+	rmdir "${WORKDIR}"/bundled || die
+
+	epatch "${PATCHES[@]}"
+
+	# Sledgehammer:
+	# - prevent fetching of bundled stuff in compile and install phase
+	# - respect CFLAGS
+	# - respect EPREFIX and Gentoo specific paths
+	# - fix BLAS and LAPACK link interface
+
+	sed -i \
+		-e 's|$(JLDOWNLOAD)|${EPREFIX}/bin/true|' \
+		-e 's|git submodule|${EPREFIX}/bin/true|g' \
+		-e "s|GENTOOCFLAGS|${CFLAGS}|g" \
+		-e "s|/usr/include|${EPREFIX%/}/usr/include|g" \
+		deps/Makefile || die
+
+	local libblas="$($(tc-getPKG_CONFIG) --libs-only-l blas)"
+	libblas="${libblas%% *}"
+	libblas="lib${libblas#-l}"
+	local liblapack="$($(tc-getPKG_CONFIG) --libs-only-l lapack)"
+	liblapack="${liblapack%% *}"
+	liblapack="lib${liblapack#-l}"
+
+	sed -i \
+		-e "s|\(JULIA_EXECUTABLE = \)\(\$(JULIAHOME)/julia\)|\1 LD_LIBRARY_PATH=\$(BUILD)/$(get_libdir) \2|" \
+		-e "s|GENTOOCFLAGS|${CFLAGS}|g" \
+		-e "s|LIBDIR = lib|LIBDIR = $(get_libdir)|" \
+		-e "s|/usr/lib|${EPREFIX}/usr/$(get_libdir)|" \
+		-e "s|/usr/include|${EPREFIX}/usr/include|" \
+		-e "s|\$(BUILD)/lib|\$(BUILD)/$(get_libdir)|" \
+		-e "s|^JULIA_COMMIT = .*|JULIA_COMMIT = v${PV}|" \
+		-e "s|-lblas|$($(tc-getPKG_CONFIG) --libs blas)|" \
+		-e "s|= libblas|= ${libblas}|" \
+		-e "s|-llapack|$($(tc-getPKG_CONFIG) --libs lapack)|" \
+		-e "s|= liblapack|= ${liblapack}|" \
+		Make.inc || die
+
+	sed -i \
+		-e "s|,lib)|,$(get_libdir))|g" \
+		-e "s|\$(BUILD)/lib|\$(BUILD)/$(get_libdir)|g" \
+		Makefile || die
+
+	sed -i \
+		-e "s|ar -rcs|$(tc-getAR) -rcs|g" \
+		src/Makefile || die
+}
+
+src_configure() {
+	# julia does not play well with the system versions of
+	# dsfmt, libuv, pcre2 and utf8proc
+	cat <<-EOF > Make.user
+		USE_SYSTEM_DSFMT=0
+		USE_SYSTEM_LIBUV=0
+		USE_SYSTEM_PCRE=0
+		USE_SYSTEM_RMATH=0
+		USE_SYSTEM_UTF8PROC=0
+		USE_LLVM_SHLIB=1
+		USE_SYSTEM_ARPACK=1
+		USE_SYSTEM_BLAS=1
+		USE_SYSTEM_FFTW=1
+		USE_SYSTEM_GMP=1
+		USE_SYSTEM_GRISU=1
+		USE_SYSTEM_LAPACK=1
+		USE_SYSTEM_LIBGIT2=1
+		USE_SYSTEM_LIBM=1
+		USE_SYSTEM_LIBUNWIND=1
+		USE_SYSTEM_LLVM=1
+		USE_SYSTEM_MPFR=1
+		USE_SYSTEM_OPENLIBM=1
+		USE_SYSTEM_OPENSPECFUN=1
+		USE_SYSTEM_PATCHELF=1
+		USE_SYSTEM_READLINE=1
+		USE_SYSTEM_SUITESPARSE=1
+		USE_SYSTEM_ZLIB=1
+		VERBOSE=1
+	EOF
+
+}
+
+src_compile() {
+	emake cleanall
+	emake julia-release \
+		prefix="/usr" DESTDIR="${D}" CC="$(tc-getCC)" CXX="$(tc-getCXX)"
+	pax-mark m $(file usr/bin/julia-* | awk -F : '/ELF/ {print $1}')
+	emake
+	use emacs && elisp-compile contrib/julia-mode.el
+}
+
+src_test() {
+	emake test
+}
+
+src_install() {
+	emake install \
+		prefix="/usr" DESTDIR="${D}" CC="$(tc-getCC)" CXX="$(tc-getCXX)"
+	cat > 99julia <<-EOF
+		LDPATH=${EROOT%/}/usr/$(get_libdir)/julia
+	EOF
+	doenvd 99julia
+
+	if use emacs; then
+		elisp-install "${PN}" contrib/julia-mode.el
+		elisp-site-file-install "${FILESDIR}"/63julia-gentoo.el
+	fi
+	dodoc README.md
+
+	mv "${ED}"/usr/etc/julia "${ED}"/etc || die
+	rmdir "${ED}"/usr/etc || die
+	rmdir "${ED}"/usr/libexec || die
+	mv "${ED}"/usr/share/doc/julia/{examples,html} \
+		"${ED}"/usr/share/doc/${P} || die
+	rmdir "${ED}"/usr/share/doc/julia || die
+	if [[ $(get_libdir) != lib ]]; then
+		mkdir -p "${ED}"/usr/$(get_libdir) || die
+		mv "${ED}"/usr/lib/julia "${ED}"/usr/$(get_libdir)/julia || die
+	fi
+}
+
+pkg_postinst() {
+	use emacs && elisp-site-regen
+}
+
+pkg_postrm() {
+	use emacs && elisp-site-regen
+}