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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit eutils toolchain-funcs
DESCRIPTION="HMM-based prokaryotic and eukaryotic gene prediction tool"
HOMEPAGE="http://korflab.ucdavis.edu/software.html"
SRC_URI="http://korflab.ucdavis.edu/Software/snap-2013-11-29.tar.gz"
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
DEPEND=""
RDEPEND="${DEPEND}"
S="${WORKDIR}"/snap
src_prepare(){
sed -e "s#CC=\"gcc.*#CC=$(tc-getCC)#" -i Zoe/Makefile || die
sed -e "s#CC=\"gcc.*#CC=$(tc-getCC)#" -i Makefile || die
}
src_install(){
echo "ZOE=/usr/share/snap/HMM" > 99snap || die
doenvd 99snap
insinto /usr/share/snap/HMM
doins HMM/[a-zA-Z]*.hmm
dobin snap fathom forge *.pl
dodoc 00README
}
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