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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$

EAPI=5

PYTHON_COMPAT=( python2_7 )

inherit distutils-r1

DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
HOMEPAGE="http://code.google.com/p/pysam http://pypi.python.org/pypi/pysam"
SRC_URI="http://${PN}.googlecode.com/files/${P}.tar.gz"

LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""

DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]
	<=sci-biology/samtools-0.1.19-r2[${PYTHON_USEDEP}]"

python_compile() {
	python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
	distutils-r1_python_compile
}