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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
inherit java-pkg-2 git-r3
DESCRIPTION="Viewer for Microarray Data in PCL or CDT formats"
HOMEPAGE="http://jtreeview.sourceforge.net
https://bitbucket.org/TreeView3Dev/treeview3"
EGIT_REPO_URI="https://bitbucket.org/TreeView3Dev/treeview3.git"
LICENSE="MIT"
SLOT="0"
KEYWORDS="" # builds and executes fines
IUSE=""
DEPEND=">virtual/jdk-1.7:*"
RDEPEND="${DEPEND}
>=virtual/jre-1.7:*"
src_prepare(){
chmod u+x ./gradle* || die
eapply_user
}
src_compile(){
# work around gradle writing $HOME/.gradle, requiring $HOME/.git and $HOME/.m2/
# https://github.com/samtools/htsjdk/issues/660#issuecomment-232155965
# make jure SDK-1.8 is available, JRE-1.8 is not enough
GRADLE_USER_HOME="${WORKDIR}" ./gradlew || die
}
src_install(){
cd build/libs || die
java-pkg_dojar *.jar
java-pkg_dolauncher ${PN}
}
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