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* sci-physics/cuttools: Unbundle depsHEADmasterAlexander Puck Neuwirth14 hours2-0/+70
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-mathematics/frama-c: drop duplicate, newer version in ::guruNowa Ammerlaan43 hours3-79/+0
| | | | Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* dev-python/geopandas: add 1.0.1 with masked testsFilip Kobierski43 hours2-0/+49
| | | | | | | | | | | | - add version numbers to DEPENDs - use EPYTEST_DESELECT - add known test failiures to deselect - improve comment - clean out optfeatures Signed-off-by: Filip Kobierski <fkobi@pm.me> Closes: https://github.com/gentoo/sci/pull/1302 Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* dev-python/fiona: drop 1.9.0Filip Kobierski43 hours2-77/+0
| | | | | Signed-off-by: Filip Kobierski <fkobi@pm.me> Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* dev-python/fiona: fix pypi redirectionFilip Kobierski43 hours1-1/+1
| | | | | Signed-off-by: Filip Kobierski <fkobi@pm.me> Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* dev-python/fiona: add 1.10.1 with improvementsFilip Kobierski43 hours2-0/+69
| | | | | | | | | | | | | | - introduce DISTUTILS_EXT - use EPYTEST_DESELECT - tests - add test? BDEPENDs - reintroduce one test - mask one test - remove commented out code - improve wording of first deselected tests comment Signed-off-by: Filip Kobierski <fkobi@pm.me> Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* dev-python/fiona: simple version bump tp 1.9.6Filip Kobierski43 hours2-0/+77
| | | | | Signed-off-by: Filip Kobierski <fkobi@pm.me> Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* dev-python/cligj: add py3.12, add github tarball suffixFilip Kobierski43 hours2-4/+4
| | | | | Signed-off-by: Filip Kobierski <fkobi@pm.me> Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* dev-python/{cligj,fiona,geopandas}: complete upstream tag in metadataFilip Kobierski43 hours3-4/+12
| | | | | Signed-off-by: Filip Kobierski <fkobi@pm.me> Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* dev-python/{cligj,fiona}: fix indentation in metadataFilip Kobierski43 hours2-9/+9
| | | | | Signed-off-by: Filip Kobierski <fkobi@pm.me> Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* sci-libs/rdkit: version bump 2024.09.2Michael Schubert5 days2-1/+6
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1300 Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* sci-physics/cuttools: add 1.9.3Alexander Puck Neuwirth6 days2-0/+53
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/qcdloop: add 2.0.11, drop 2.0.5Alexander Puck Neuwirth6 days3-3/+41
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* */*: Rename dev-python/{jinja → jinja2}Alexander Puck Neuwirth6 days7-7/+7
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/mplhep: add 0.3.55, drop 0.3.53Alexander Puck Neuwirth7 days2-1/+1
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-biology/bx-python: version bump 0.13.0Michael Schubert8 days2-6/+2
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1297 Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* dev-python/pyfaidx: version bump 0.8.1.3Michael Schubert8 days2-1/+1
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1298 Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* sci-biology/fastp: version bump 0.24.0Michael Schubert8 days2-2/+2
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1299 Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* .mailmap: init mailmapNowa Ammerlaan9 days1-0/+8
| | | | Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* */*: rename account andrewammerlaan -> nowaNowa Ammerlaan9 days5-6/+6
| | | | | Bug: https://bugs.gentoo.org/940905 Signed-off-by: Nowa Ammerlaan <nowa@gentoo.org>
* sci-physics/sherpa: add 3.0.1, drop 3.0.0_beta1Alexander Puck Neuwirth10 days2-1/+1
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* profiles: unmask ant-core revdepsAlexander Puck Neuwirth12 days1-7/+0
| | | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de> Closes: https://github.com/gentoo/sci/pull/1294
* sci-chemistry/jligand: treecleanAlexander Puck Neuwirth12 days3-41/+0
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-*/*: remove dead java-ant-2 eclassAlexander Puck Neuwirth12 days11-27/+51
| | | | | See: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f28ab51fad9acb876a8fef5dd56f656afcd2776c Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* profiles: mask ant-core revdepsAndrew Ammerlaan2024-10-301-0/+7
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/rdkit: version bump 2024.03.4Michael Schubert2024-10-305-33/+47
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1288 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/torchvision: add 0.19.1, drop oldsYiyang Wu2024-10-305-83/+25
| | | | | | | | | | | | Enable tests. torchvision should be rebuilt if caffe2 turns on/off cuda or rocm. So adding cuda/rocm to USE flag and dependencies to handle this. Reference: https://bugs.gentoo.org/680496 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Closes: https://github.com/gentoo/sci/pull/1293 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-physics/cernlib: add 2024.06.12.0Alexander Puck Neuwirth2024-10-232-0/+81
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/archspec: add 0.2.5Alexander Puck Neuwirth2024-10-222-0/+22
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/hepstats: new package, add 0.8.1Alexander Puck Neuwirth2024-10-223-0/+45
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/asdf*: add 3.5.0Alexander Puck Neuwirth2024-10-228-0/+123
| | | | | Co-authored-by: Nowa Ammerlaan <andrewammerlaan@gentoo.org> Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/mplhep: new package, add 0.3.53Alexander Puck Neuwirth2024-10-223-0/+67
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/histoprint: add 2.5.0Alexander Puck Neuwirth2024-10-222-0/+27
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/resample: new package, add 1.10.1Alexander Puck Neuwirth2024-10-223-0/+39
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/decaylanguage: new package, add 0.18.5Alexander Puck Neuwirth2024-10-223-0/+48
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/mplhep-data: new package, add 0.0.4Alexander Puck Neuwirth2024-10-223-0/+38
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/pylhe: add 0.9.0Alexander Puck Neuwirth2024-10-222-0/+35
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/scikit-hep-testdata: add 0.4.48Alexander Puck Neuwirth2024-10-222-0/+38
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/uproot: add 5.4.1Alexander Puck Neuwirth2024-10-222-0/+31
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/awkward: add 2.6.9Alexander Puck Neuwirth2024-10-222-0/+47
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/particle: add 0.25.2Alexander Puck Neuwirth2024-10-223-3/+56
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/hepunits: add 2.3.5Alexander Puck Neuwirth2024-10-222-0/+24
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/hist: add 2.8.0Alexander Puck Neuwirth2024-10-222-0/+27
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/vector: add 1.5.2Alexander Puck Neuwirth2024-10-222-0/+34
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/awkward-cpp: add 39Alexander Puck Neuwirth2024-10-222-0/+34
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/boost-histogram: add 1.5.0Alexander Puck Neuwirth2024-10-222-0/+44
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/uhi: add 0.5.0Alexander Puck Neuwirth2024-10-222-0/+28
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-biology/trimmomatic: unkeyword 0.39 for ~x86Andrew Ammerlaan2024-10-201-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-misc/jwnl: unkeyword 1.4_rc2 for ~x86Andrew Ammerlaan2024-10-201-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/cutadapt: new package, add 4.9Alexey Shvetsov2024-09-293-0/+41
| | | | Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>