diff options
| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-10 20:22:45 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-10 20:23:46 +0100 |
| commit | 83080608e7ef3888372eed8060b07d32e7cd737f (patch) | |
| tree | 1722efa4a4e0e87ee7633d2b6f77615f0617404a /licenses | |
| parent | sci-biology/ncbi-blast+: add RESTRICT="!test? ( test )" (diff) | |
| download | sci-83080608e7ef3888372eed8060b07d32e7cd737f.tar.gz sci-83080608e7ef3888372eed8060b07d32e7cd737f.tar.bz2 sci-83080608e7ef3888372eed8060b07d32e7cd737f.zip | |
app-text/noweb: new dep
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'licenses')
| -rw-r--r-- | licenses/AURA | 29 | ||||
| -rw-r--r-- | licenses/CeCILL-2.1 | 519 | ||||
| -rw-r--r-- | licenses/HGSC-BCM | 8 | ||||
| -rw-r--r-- | licenses/ICS | 14 | ||||
| -rw-r--r-- | licenses/LNLL-BSD | 57 | ||||
| -rw-r--r-- | licenses/MGLTOOLS | 41 | ||||
| -rw-r--r-- | licenses/MIT-KhronosGroup | 25 | ||||
| -rw-r--r-- | licenses/MSR-LA | 104 | ||||
| -rw-r--r-- | licenses/PMEL-FERRET | 33 | ||||
| -rw-r--r-- | licenses/UTPackages | 115 | ||||
| -rw-r--r-- | licenses/XPLOR-NIH | 37 | ||||
| -rw-r--r-- | licenses/atsas | 211 | ||||
| -rw-r--r-- | licenses/direx | 53 | ||||
| -rw-r--r-- | licenses/gDEBugger | 232 | ||||
| -rw-r--r-- | licenses/hoomd-blue | 46 | ||||
| -rw-r--r-- | licenses/mpich | 39 | ||||
| -rw-r--r-- | licenses/noweb | 22 | ||||
| -rw-r--r-- | licenses/oncotator | 46 | ||||
| -rw-r--r-- | licenses/opal | 38 | ||||
| -rw-r--r-- | licenses/phaser | 280 | ||||
| -rw-r--r-- | licenses/phaser-com | 290 | ||||
| -rw-r--r-- | licenses/phenix | 174 | ||||
| -rw-r--r-- | licenses/pydap | 20 | ||||
| -rw-r--r-- | licenses/pyvcf | 46 | ||||
| -rw-r--r-- | licenses/rosetta-academic | 52 | ||||
| -rw-r--r-- | licenses/rosetta-commercial | 26 | ||||
| -rw-r--r-- | licenses/smartgit | 120 |
27 files changed, 22 insertions, 2655 deletions
diff --git a/licenses/AURA b/licenses/AURA deleted file mode 100644 index 8ffca19cd..000000000 --- a/licenses/AURA +++ /dev/null @@ -1,29 +0,0 @@ -Copyright (C) 2008 Association of Universities for Research in Astronomy (AURA) - -Redistribution and use in source and binary forms, with or without -modification, are permitted provided that the following conditions are met: - - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - - 2. Redistributions in binary form must reproduce the above - copyright notice, this list of conditions and the following - disclaimer in the documentation and/or other materials provided - with the distribution. - - 3. The name of AURA and its representatives may not be used to - endorse or promote products derived from this software without - specific prior written permission. - -THIS SOFTWARE IS PROVIDED BY AURA ``AS IS'' AND ANY EXPRESS OR IMPLIED -WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF -MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE -DISCLAIMED. IN NO EVENT SHALL AURA BE LIABLE FOR ANY DIRECT, INDIRECT, -INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, -BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS -OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND -ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR -TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE -USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH -DAMAGE. - diff --git a/licenses/CeCILL-2.1 b/licenses/CeCILL-2.1 deleted file mode 100644 index b705f37a2..000000000 --- a/licenses/CeCILL-2.1 +++ /dev/null @@ -1,519 +0,0 @@ - - CeCILL FREE SOFTWARE LICENSE AGREEMENT - -Version 2.1 dated 2013-06-21 - - - Notice - -This Agreement is a Free Software license agreement that is the result -of discussions between its authors in order to ensure compliance with -the two main principles guiding its drafting: - - * firstly, compliance with the principles governing the distribution - of Free Software: access to source code, broad rights granted to users, - * secondly, the election of a governing law, French law, with which it - is conformant, both as regards the law of torts and intellectual - property law, and the protection that it offers to both authors and - holders of the economic rights over software. - -The authors of the CeCILL (for Ce[a] C[nrs] I[nria] L[ogiciel] L[ibre]) -license are: - -Commissariat ŕ l'énergie atomique et aux énergies alternatives - CEA, a -public scientific, technical and industrial research establishment, -having its principal place of business at 25 rue Leblanc, immeuble Le -Ponant D, 75015 Paris, France. - -Centre National de la Recherche Scientifique - CNRS, a public scientific -and technological establishment, having its principal place of business -at 3 rue Michel-Ange, 75794 Paris cedex 16, France. - -Institut National de Recherche en Informatique et en Automatique - -Inria, a public scientific and technological establishment, having its -principal place of business at Domaine de Voluceau, Rocquencourt, BP -105, 78153 Le Chesnay cedex, France. - - - Preamble - -The purpose of this Free Software license agreement is to grant users -the right to modify and redistribute the software governed by this -license within the framework of an open source distribution model. - -The exercising of this right is conditional upon certain obligations for -users so as to preserve this status for all subsequent redistributions. - -In consideration of access to the source code and the rights to copy, -modify and redistribute granted by the license, users are provided only -with a limited warranty and the software's author, the holder of the -economic rights, and the successive licensors only have limited liability. - -In this respect, the risks associated with loading, using, modifying -and/or developing or reproducing the software by the user are brought to -the user's attention, given its Free Software status, which may make it -complicated to use, with the result that its use is reserved for -developers and experienced professionals having in-depth computer -knowledge. Users are therefore encouraged to load and test the -suitability of the software as regards their requirements in conditions -enabling the security of their systems and/or data to be ensured and, -more generally, to use and operate it in the same conditions of -security. This Agreement may be freely reproduced and published, -provided it is not altered, and that no provisions are either added or -removed herefrom. - -This Agreement may apply to any or all software for which the holder of -the economic rights decides to submit the use thereof to its provisions. - -Frequently asked questions can be found on the official website of the -CeCILL licenses family (http://www.cecill.info/index.en.html) for any -necessary clarification. - - - Article 1 - DEFINITIONS - -For the purpose of this Agreement, when the following expressions -commence with a capital letter, they shall have the following meaning: - -Agreement: means this license agreement, and its possible subsequent -versions and annexes. - -Software: means the software in its Object Code and/or Source Code form -and, where applicable, its documentation, "as is" when the Licensee -accepts the Agreement. - -Initial Software: means the Software in its Source Code and possibly its -Object Code form and, where applicable, its documentation, "as is" when -it is first distributed under the terms and conditions of the Agreement. - -Modified Software: means the Software modified by at least one -Contribution. - -Source Code: means all the Software's instructions and program lines to -which access is required so as to modify the Software. - -Object Code: means the binary files originating from the compilation of -the Source Code. - -Holder: means the holder(s) of the economic rights over the Initial -Software. - -Licensee: means the Software user(s) having accepted the Agreement. - -Contributor: means a Licensee having made at least one Contribution. - -Licensor: means the Holder, or any other individual or legal entity, who -distributes the Software under the Agreement. - -Contribution: means any or all modifications, corrections, translations, -adaptations and/or new functions integrated into the Software by any or -all Contributors, as well as any or all Internal Modules. - -Module: means a set of sources files including their documentation that -enables supplementary functions or services in addition to those offered -by the Software. - -External Module: means any or all Modules, not derived from the -Software, so that this Module and the Software run in separate address -spaces, with one calling the other when they are run. - -Internal Module: means any or all Module, connected to the Software so -that they both execute in the same address space. - -GNU GPL: means the GNU General Public License version 2 or any -subsequent version, as published by the Free Software Foundation Inc. - -GNU Affero GPL: means the GNU Affero General Public License version 3 or -any subsequent version, as published by the Free Software Foundation Inc. - -EUPL: means the European Union Public License version 1.1 or any -subsequent version, as published by the European Commission. - -Parties: mean both the Licensee and the Licensor. - -These expressions may be used both in singular and plural form. - - - Article 2 - PURPOSE - -The purpose of the Agreement is the grant by the Licensor to the -Licensee of a non-exclusive, transferable and worldwide license for the -Software as set forth in Article 5 <#scope> hereinafter for the whole -term of the protection granted by the rights over said Software. - - - Article 3 - ACCEPTANCE - -3.1 The Licensee shall be deemed as having accepted the terms and -conditions of this Agreement upon the occurrence of the first of the -following events: - - * (i) loading the Software by any or all means, notably, by - downloading from a remote server, or by loading from a physical medium; - * (ii) the first time the Licensee exercises any of the rights granted - hereunder. - -3.2 One copy of the Agreement, containing a notice relating to the -characteristics of the Software, to the limited warranty, and to the -fact that its use is restricted to experienced users has been provided -to the Licensee prior to its acceptance as set forth in Article 3.1 -<#accepting> hereinabove, and the Licensee hereby acknowledges that it -has read and understood it. - - - Article 4 - EFFECTIVE DATE AND TERM - - - 4.1 EFFECTIVE DATE - -The Agreement shall become effective on the date when it is accepted by -the Licensee as set forth in Article 3.1 <#accepting>. - - - 4.2 TERM - -The Agreement shall remain in force for the entire legal term of -protection of the economic rights over the Software. - - - Article 5 - SCOPE OF RIGHTS GRANTED - -The Licensor hereby grants to the Licensee, who accepts, the following -rights over the Software for any or all use, and for the term of the -Agreement, on the basis of the terms and conditions set forth hereinafter. - -Besides, if the Licensor owns or comes to own one or more patents -protecting all or part of the functions of the Software or of its -components, the Licensor undertakes not to enforce the rights granted by -these patents against successive Licensees using, exploiting or -modifying the Software. If these patents are transferred, the Licensor -undertakes to have the transferees subscribe to the obligations set -forth in this paragraph. - - - 5.1 RIGHT OF USE - -The Licensee is authorized to use the Software, without any limitation -as to its fields of application, with it being hereinafter specified -that this comprises: - - 1. permanent or temporary reproduction of all or part of the Software - by any or all means and in any or all form. - - 2. loading, displaying, running, or storing the Software on any or all - medium. - - 3. entitlement to observe, study or test its operation so as to - determine the ideas and principles behind any or all constituent - elements of said Software. This shall apply when the Licensee - carries out any or all loading, displaying, running, transmission or - storage operation as regards the Software, that it is entitled to - carry out hereunder. - - - 5.2 ENTITLEMENT TO MAKE CONTRIBUTIONS - -The right to make Contributions includes the right to translate, adapt, -arrange, or make any or all modifications to the Software, and the right -to reproduce the resulting software. - -The Licensee is authorized to make any or all Contributions to the -Software provided that it includes an explicit notice that it is the -author of said Contribution and indicates the date of the creation thereof. - - - 5.3 RIGHT OF DISTRIBUTION - -In particular, the right of distribution includes the right to publish, -transmit and communicate the Software to the general public on any or -all medium, and by any or all means, and the right to market, either in -consideration of a fee, or free of charge, one or more copies of the -Software by any means. - -The Licensee is further authorized to distribute copies of the modified -or unmodified Software to third parties according to the terms and -conditions set forth hereinafter. - - - 5.3.1 DISTRIBUTION OF SOFTWARE WITHOUT MODIFICATION - -The Licensee is authorized to distribute true copies of the Software in -Source Code or Object Code form, provided that said distribution -complies with all the provisions of the Agreement and is accompanied by: - - 1. a copy of the Agreement, - - 2. a notice relating to the limitation of both the Licensor's warranty - and liability as set forth in Articles 8 and 9, - -and that, in the event that only the Object Code of the Software is -redistributed, the Licensee allows effective access to the full Source -Code of the Software for a period of at least three years from the -distribution of the Software, it being understood that the additional -acquisition cost of the Source Code shall not exceed the cost of the -data transfer. - - - 5.3.2 DISTRIBUTION OF MODIFIED SOFTWARE - -When the Licensee makes a Contribution to the Software, the terms and -conditions for the distribution of the resulting Modified Software -become subject to all the provisions of this Agreement. - -The Licensee is authorized to distribute the Modified Software, in -source code or object code form, provided that said distribution -complies with all the provisions of the Agreement and is accompanied by: - - 1. a copy of the Agreement, - - 2. a notice relating to the limitation of both the Licensor's warranty - and liability as set forth in Articles 8 and 9, - -and, in the event that only the object code of the Modified Software is -redistributed, - - 3. a note stating the conditions of effective access to the full source - code of the Modified Software for a period of at least three years - from the distribution of the Modified Software, it being understood - that the additional acquisition cost of the source code shall not - exceed the cost of the data transfer. - - - 5.3.3 DISTRIBUTION OF EXTERNAL MODULES - -When the Licensee has developed an External Module, the terms and -conditions of this Agreement do not apply to said External Module, that -may be distributed under a separate license agreement. - - - 5.3.4 COMPATIBILITY WITH OTHER LICENSES - -The Licensee can include a code that is subject to the provisions of one -of the versions of the GNU GPL, GNU Affero GPL and/or EUPL in the -Modified or unmodified Software, and distribute that entire code under -the terms of the same version of the GNU GPL, GNU Affero GPL and/or EUPL. - -The Licensee can include the Modified or unmodified Software in a code -that is subject to the provisions of one of the versions of the GNU GPL, -GNU Affero GPL and/or EUPL and distribute that entire code under the -terms of the same version of the GNU GPL, GNU Affero GPL and/or EUPL. - - - Article 6 - INTELLECTUAL PROPERTY - - - 6.1 OVER THE INITIAL SOFTWARE - -The Holder owns the economic rights over the Initial Software. Any or -all use of the Initial Software is subject to compliance with the terms -and conditions under which the Holder has elected to distribute its work -and no one shall be entitled to modify the terms and conditions for the -distribution of said Initial Software. - -The Holder undertakes that the Initial Software will remain ruled at -least by this Agreement, for the duration set forth in Article 4.2 <#term>. - - - 6.2 OVER THE CONTRIBUTIONS - -The Licensee who develops a Contribution is the owner of the -intellectual property rights over this Contribution as defined by -applicable law. - - - 6.3 OVER THE EXTERNAL MODULES - -The Licensee who develops an External Module is the owner of the -intellectual property rights over this External Module as defined by -applicable law and is free to choose the type of agreement that shall -govern its distribution. - - - 6.4 JOINT PROVISIONS - -The Licensee expressly undertakes: - - 1. not to remove, or modify, in any manner, the intellectual property - notices attached to the Software; - - 2. to reproduce said notices, in an identical manner, in the copies of - the Software modified or not. - -The Licensee undertakes not to directly or indirectly infringe the -intellectual property rights on the Software of the Holder and/or -Contributors, and to take, where applicable, vis-ŕ-vis its staff, any -and all measures required to ensure respect of said intellectual -property rights of the Holder and/or Contributors. - - - Article 7 - RELATED SERVICES - -7.1 Under no circumstances shall the Agreement oblige the Licensor to -provide technical assistance or maintenance services for the Software. - -However, the Licensor is entitled to offer this type of services. The -terms and conditions of such technical assistance, and/or such -maintenance, shall be set forth in a separate instrument. Only the -Licensor offering said maintenance and/or technical assistance services -shall incur liability therefor. - -7.2 Similarly, any Licensor is entitled to offer to its licensees, under -its sole responsibility, a warranty, that shall only be binding upon -itself, for the redistribution of the Software and/or the Modified -Software, under terms and conditions that it is free to decide. Said -warranty, and the financial terms and conditions of its application, -shall be subject of a separate instrument executed between the Licensor -and the Licensee. - - - Article 8 - LIABILITY - -8.1 Subject to the provisions of Article 8.2, the Licensee shall be -entitled to claim compensation for any direct loss it may have suffered -from the Software as a result of a fault on the part of the relevant -Licensor, subject to providing evidence thereof. - -8.2 The Licensor's liability is limited to the commitments made under -this Agreement and shall not be incurred as a result of in particular: -(i) loss due the Licensee's total or partial failure to fulfill its -obligations, (ii) direct or consequential loss that is suffered by the -Licensee due to the use or performance of the Software, and (iii) more -generally, any consequential loss. In particular the Parties expressly -agree that any or all pecuniary or business loss (i.e. loss of data, -loss of profits, operating loss, loss of customers or orders, -opportunity cost, any disturbance to business activities) or any or all -legal proceedings instituted against the Licensee by a third party, -shall constitute consequential loss and shall not provide entitlement to -any or all compensation from the Licensor. - - - Article 9 - WARRANTY - -9.1 The Licensee acknowledges that the scientific and technical -state-of-the-art when the Software was distributed did not enable all -possible uses to be tested and verified, nor for the presence of -possible defects to be detected. In this respect, the Licensee's -attention has been drawn to the risks associated with loading, using, -modifying and/or developing and reproducing the Software which are -reserved for experienced users. - -The Licensee shall be responsible for verifying, by any or all means, -the suitability of the product for its requirements, its good working -order, and for ensuring that it shall not cause damage to either persons -or properties. - -9.2 The Licensor hereby represents, in good faith, that it is entitled -to grant all the rights over the Software (including in particular the -rights set forth in Article 5 <#scope>). - -9.3 The Licensee acknowledges that the Software is supplied "as is" by -the Licensor without any other express or tacit warranty, other than -that provided for in Article 9.2 <#good-faith> and, in particular, -without any warranty as to its commercial value, its secured, safe, -innovative or relevant nature. - -Specifically, the Licensor does not warrant that the Software is free -from any error, that it will operate without interruption, that it will -be compatible with the Licensee's own equipment and software -configuration, nor that it will meet the Licensee's requirements. - -9.4 The Licensor does not either expressly or tacitly warrant that the -Software does not infringe any third party intellectual property right -relating to a patent, software or any other property right. Therefore, -the Licensor disclaims any and all liability towards the Licensee -arising out of any or all proceedings for infringement that may be -instituted in respect of the use, modification and redistribution of the -Software. Nevertheless, should such proceedings be instituted against -the Licensee, the Licensor shall provide it with technical and legal -expertise for its defense. Such technical and legal expertise shall be -decided on a case-by-case basis between the relevant Licensor and the -Licensee pursuant to a memorandum of understanding. The Licensor -disclaims any and all liability as regards the Licensee's use of the -name of the Software. No warranty is given as regards the existence of -prior rights over the name of the Software or as regards the existence -of a trademark. - - - Article 10 - TERMINATION - -10.1 In the event of a breach by the Licensee of its obligations -hereunder, the Licensor may automatically terminate this Agreement -thirty (30) days after notice has been sent to the Licensee and has -remained ineffective. - -10.2 A Licensee whose Agreement is terminated shall no longer be -authorized to use, modify or distribute the Software. However, any -licenses that it may have granted prior to termination of the Agreement -shall remain valid subject to their having been granted in compliance -with the terms and conditions hereof. - - - Article 11 - MISCELLANEOUS - - - 11.1 EXCUSABLE EVENTS - -Neither Party shall be liable for any or all delay, or failure to -perform the Agreement, that may be attributable to an event of force -majeure, an act of God or an outside cause, such as defective -functioning or interruptions of the electricity or telecommunications -networks, network paralysis following a virus attack, intervention by -government authorities, natural disasters, water damage, earthquakes, -fire, explosions, strikes and labor unrest, war, etc. - -11.2 Any failure by either Party, on one or more occasions, to invoke -one or more of the provisions hereof, shall under no circumstances be -interpreted as being a waiver by the interested Party of its right to -invoke said provision(s) subsequently. - -11.3 The Agreement cancels and replaces any or all previous agreements, -whether written or oral, between the Parties and having the same -purpose, and constitutes the entirety of the agreement between said -Parties concerning said purpose. No supplement or modification to the -terms and conditions hereof shall be effective as between the Parties -unless it is made in writing and signed by their duly authorized -representatives. - -11.4 In the event that one or more of the provisions hereof were to -conflict with a current or future applicable act or legislative text, -said act or legislative text shall prevail, and the Parties shall make -the necessary amendments so as to comply with said act or legislative -text. All other provisions shall remain effective. Similarly, invalidity -of a provision of the Agreement, for any reason whatsoever, shall not -cause the Agreement as a whole to be invalid. - - - 11.5 LANGUAGE - -The Agreement is drafted in both French and English and both versions -are deemed authentic. - - - Article 12 - NEW VERSIONS OF THE AGREEMENT - -12.1 Any person is authorized to duplicate and distribute copies of this -Agreement. - -12.2 So as to ensure coherence, the wording of this Agreement is -protected and may only be modified by the authors of the License, who -reserve the right to periodically publish updates or new versions of the -Agreement, each with a separate number. These subsequent versions may -address new issues encountered by Free Software. - -12.3 Any Software distributed under a given version of the Agreement may -only be subsequently distributed under the same version of the Agreement -or a subsequent version, subject to the provisions of Article 5.3.4 -<#compatibility>. - - - Article 13 - GOVERNING LAW AND JURISDICTION - -13.1 The Agreement is governed by French law. The Parties agree to -endeavor to seek an amicable solution to any disagreements or disputes -that may arise during the performance of the Agreement. - -13.2 Failing an amicable solution within two (2) months as from their -occurrence, and unless emergency proceedings are necessary, the -disagreements or disputes shall be referred to the Paris Courts having -jurisdiction, by the more diligent Party. - diff --git a/licenses/HGSC-BCM b/licenses/HGSC-BCM deleted file mode 100644 index 2f7b5bec0..000000000 --- a/licenses/HGSC-BCM +++ /dev/null @@ -1,8 +0,0 @@ -© 2011 Human Genome Sequencing Center, Baylor College of Medicine. All rights reserved. - -Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: - - Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. - - Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. - diff --git a/licenses/ICS b/licenses/ICS deleted file mode 100644 index 042cd9e47..000000000 --- a/licenses/ICS +++ /dev/null @@ -1,14 +0,0 @@ -Copyright (c) <YOUR NAME>, and CONTRIBUTORS -Copyright (c) <YEAR> <YOUR INSTITUTION> - -Permission to use, copy, modify, and distribute this software for any -purpose with or without fee is hereby granted, provided that the above -copyright notice and this permission notice appear in all copies. - -THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES -WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF -MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR -ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES -WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN -ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF -OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE. diff --git a/licenses/LNLL-BSD b/licenses/LNLL-BSD deleted file mode 100644 index 5d9e89279..000000000 --- a/licenses/LNLL-BSD +++ /dev/null @@ -1,57 +0,0 @@ -Copyright (c) 2012, Lawrence Livermore National Security, LLC. -Produced at the Lawrence Livermore National Laboratory -Written by David Grote, grote1@llnl.gov. -LLNL-CODE-544231 -All rights reserved. - -This file is part of Forthon. For details, see http://hifweb.lbl.gov/Forthon. -Please also read below, an Additional BSD Notice. - -Redistribution and use in source and binary forms, with or without -modification, are permitted provided that the following conditions are met: - - * Redistributions of source code must retain the above copyright notice, - this list of conditions and the disclaimer below. - - * Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the disclaimer (as noted below) in - the documentation and/or other materials provided with the distribution. - - * Neither the name of the LLNS/LLNL nor the names of its contributors may - be used to endorse or promote products derived from this software - without specific prior written permission. - -THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" -AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE -IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE -ARE DISCLAIMED. IN NO EVENT SHALL LAWRENCE LIVERMORE NATIONAL SECURITY, LLC, -THE U.S. DEPARTMENT OF ENERGY OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, -INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES -(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; -LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND -ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT -(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS -SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - -Additional BSD Notice - -1. This notice is required to be provided under our contract with the U.S. -Department of Energy (DOE). This work was produced at Lawrence Livermore -National Laboratory under Contract No. DE-AC52-07NA27344 with the DOE. - -2. Neither the United States Government nor Lawrence Livermore National -Security, LLC nor any of their employees, makes any warranty, express or -implied, or assumes any liability or responsibility for the accuracy, -completeness, or usefulness of any information, apparatus, product, or -process disclosed, or represents that its use would not infringe -privately-owned rights. - -3. Also, reference herein to any specific commercial products, process, or -services by trade name, trademark, manufacturer or otherwise does not -necessarily constitute or imply its endorsement, recommendation, or favoring -by the United States Government or Lawrence Livermore National Security, LLC. -The views and opinions of authors expressed herein do not necessarily state -or reflect those of the United States Government or Lawrence Livermore -National Security, LLC, and shall not be used for advertising or product -endorsement purposes. - diff --git a/licenses/MGLTOOLS b/licenses/MGLTOOLS deleted file mode 100644 index 3e5895974..000000000 --- a/licenses/MGLTOOLS +++ /dev/null @@ -1,41 +0,0 @@ -1. Grant Of Limited License; Software Use Restrictions. The programs - received by you will be used only for NON COMMERCIAL purposes. - This license is issued to you as an individual. - - For COMMERCIAL use done with the software please contact Michel F. - Sanner for details about commercial usage license agreements. - - For any question regarding license agreements, please contact - Michel Sanner: - TSRI, Molecular Biology Department, TCP 26, - 10550 North Torrey Pines Road, La Jolla, CA 92037 - sanner@scripps.edu - tel (858) 784-7742 - fax (858) 784-2341 - - 2. COMMERCIAL USAGE is defined as revenues generating activities. These - include using this software for consulting activities and selling - applications built on top of, or using this software. Scientific - research in an academic environment and teaching are considered - NON COMMERCIAL. - - 3. Copying Restrictions. You will not sell or otherwise distribute commercially - these programs or derivatives to any other party, whether with or without - consideration. - - 4. Ownership of Software. You will not obtain, and will not attempt to - obtain copyright coverage thereon without the express purpose written - consent of The Scripps Research Institute and Dr. Sanner. - - 5. IN NO EVENT SHALL THE AUTHORS OR DISTRIBUTORS BE LIABLE TO ANY PARTY - FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES - ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY - DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE - POSSIBILITY OF SUCH DAMAGE. - - 6. THE AUTHORS AND DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES, - INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, - FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. THIS SOFTWARE - IS PROVIDED ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE - NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR - MODIFICATIONS.
\ No newline at end of file diff --git a/licenses/MIT-KhronosGroup b/licenses/MIT-KhronosGroup deleted file mode 100644 index e022241b4..000000000 --- a/licenses/MIT-KhronosGroup +++ /dev/null @@ -1,25 +0,0 @@ -Copyright (c) 2008-2015 The Khronos Group Inc. - -Permission is hereby granted, free of charge, to any person obtaining a -copy of this software and/or associated documentation files (the -"Materials"), to deal in the Materials without restriction, including -without limitation the rights to use, copy, modify, merge, publish, -distribute, sublicense, and/or sell copies of the Materials, and to -permit persons to whom the Materials are furnished to do so, subject to -the following conditions: - -The above copyright notice and this permission notice shall be included -in all copies or substantial portions of the Materials. - -MODIFICATIONS TO THIS FILE MAY MEAN IT NO LONGER ACCURATELY REFLECTS -KHRONOS STANDARDS. 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Neither the U.S. Government, nor -any agency or employee thereof, makes any warranties, expressed or implied, -with respect to the Product provided under this License, including but not -limited to the implied warranties or merchantability and fitness for any -particular purpose. - -Liability. In no event shall the U.S. Government, nor any agency or employee -thereof, be liable for any direct, indirect, or consequential damages flowing -from the use of the Product provided under this License. - -Non-Assignment. Neither this License nor any rights granted hereunder are -transferable or assignable without the explicit prior written consent of DOC. - -Names and Logos. USER shall not substitute its name or logo for the name or -logo of DOC, or any of its agencies, in identification of the Product. - -Export of technology. USER shall comply with all U.S. laws and regulations -restricting the export of the Product to other countries. - -Governing Law. This License shall be governed by the laws of United States as -interpreted and applied by the Federal courts in the District of Columbia. - -Term of License. This License shall remain in effect as long as USER uses the -Product in accordance with Paragraphs 1 and 2. - diff --git a/licenses/UTPackages b/licenses/UTPackages deleted file mode 100644 index 61f1975be..000000000 --- a/licenses/UTPackages +++ /dev/null @@ -1,115 +0,0 @@ -TERMS AND CONDITIONS FOR COPYING, -DISTRIBUTION AND MODIFICATION -1. This software is the copyright of -THE UNIVERSITY OF TEXAS AT AUSTIN, 2005. - -2. The software is available under multiple licenses. - -3. For non commercial educational and non commercial academic use, -the software including source code, interface definitions and compile -scripts are freely available. Any distribution of code, library -or executables which contains any modules from this software should -contain, conspicously and appropriately, on each copy, this copyright -and license notice and should be freely distributed. - -4. If you wish to incorporate parts of the Library into other free programs -whose distribution conditions are incompatible with these, write to the -author to ask for permission. For software which is copyrighted by the -Free Software Foundation, write to the Free Software Foundation. - -5. For any other purpose, including commercial purposes, -please contact The University of Texas at Austin for a different license. - -6. Credits: - -This software has been developed at the Computational and -Visualization center under - - Dr Chandrajit Bajaj, - Computational Applied Mathematics Chair in Visualization, - Professor of Computer Sciences, - Director of Center for Computational Visualization, - Department of Computer Sciences & - The Institute of Computational Engineering and Sciences, - Center for Computational Visualization, - 201 East 24th Street, ACES 2.324A, - 1 University Station, C0200, - Austin, TX 78712-0027. - -We request that you agree to acknowledge the use of the software that -results in any published work, including scientific papers, films and -videotapes by citing the references listed below - -For UTblur: - -C. Bajaj, V. Siddavanahalli -Fast Feature Adaptive Surfaces and Derivatives Computation for -Volumetric Particle Data -ICES and CS technical reports, The University of Texas at Austin, 2005. - -For UTisocontour: - -C. Bajaj, V. Pascucci, D. Schikore -Accelerated IsoContouring of Scalar Fields -Data Visualization Techniques, edited by C. Bajaj, John Wiley and Sons (1998). - -C. Bajaj, V. Pascucci, D. Schikore -Fast Isocontouring for Improved Interactivity -Proceedings: ACM Siggraph/IEEE Symposium on Volume Visualization, -ACM Press, (1996), San Francisco, CA. Pages: 39-46 99 - -For UTmesh: - -Y. Zhang, C. Bajaj -Adaptive and Quality Quadrilateral/Hexahedral Meshing from -Volumetric Data Computer Methods in Applied Mechanics -and Engineering (CMAME), in press, 2005. - -Y. Zhang, C. Bajaj, B-S. Sohn -3D Finite Element Meshing from Imaging Data -The special issue of Computer Methods in Applied Mechanics and -Engineering (CMAME) on Unstructured -Mesh Generation, 194(48-49):5083-5106, 2005. - -For UTsdf: - -C. Bajaj, V. Siddavanahalli -An Adaptive Grid Based Method for Computing Molecular Surfaces -and Properties ICES and CS Technical Reports, -The University of Texas at Austin, 2005. - -For UTvolrend: - -C. Bajaj, Z. Yu, M. Auer -Volumetric Feature Extraction and Visualization of Tomographic -Molecular Imaging. Journal of Structural Biology, -Volume 144, Issues 1-2, October 2003, Pages 132-143 - -For UTmolderivatives: - -C. Bajaj, V. Siddavanahalli -Fast Feature Adaptive Surfaces and Derivatives Computation for Volumetric -Particle Data ICES and CS Technical Reports, -The University of Texas at Austin, 2005. - -7. No warranty - -7a. Because the library is licensed free of charge, there is no warranty -for the library, to the extent permitted by applicable law. except when -otherwise stated in writing the copyright holders and/or other parties -provide the library "as is" without warranty of any kind, either -expressed or implied, including, but not limited to, the implied warranties -of merchantability and fitness for a particular purpose. the entire risk as -to the quality and performance of the library is with you. should the library -prove defective, you assume the cost of all necessary servicing, -repair or correction. - -7b. In no event unless required by applicable law or agreed to in writing -will any copyright holder, or any other party who may modify and/or -redistribute the library as permitted above, be liable to you for damages, -including any general, special, incidental or consequential damages -arising out of the use or inability to use the library (including but -not limited to loss of data or data being rendered inaccurate or -losses sustained by you or third parties or a failure of the -library to operate with any other software), even if such holder -or other party has been advised of the possibility of such damages.
\ No newline at end of file diff --git a/licenses/XPLOR-NIH b/licenses/XPLOR-NIH deleted file mode 100644 index 5465e23ea..000000000 --- a/licenses/XPLOR-NIH +++ /dev/null @@ -1,37 +0,0 @@ - LICENSE FOR NON-PROFIT INSTITUTIONS TO USE XPLOR-NIH - - Terms of Agreement - -By downloading or using the Xplor-NIH software you agree to the -following terms: - -- You shall not use the software for any purpose (research or - otherwise) that is supported by a "for profit" organization without - prior written authorization. - -- You agree that the software is furnished on an "as is" basis and - that the authors in no way warrant the software or any of its - results and is in no way liable for any use you make of the software. - -- Ownership of software and documentation is retained by the - appropriate, respective organizations. - -- You shall not disclose in any form either the delivered software or - documentation to third parties without prior written authorization. - - -In addition, we request that you adhere to the following practices: - -- Please report modifications and additions to the software back to - the Xplor-NIH authors. We would like the modified source code and a - test script, such that we can include the modifications in future - versions of the software. - -- In reports or publication of results obtained using Xplor-NIH, - please acknowledge use of the software by citing the article: - - - C.D. Schwieters, J.J. Kuszewski, N. Tjandra, G.M. Clore, ``The - Xplor-NIH NMR Molecular Structure Determination Package,'' - J. Magn. Res., 160, 66-74 (2003). - diff --git a/licenses/atsas b/licenses/atsas deleted file mode 100644 index 16d0e700f..000000000 --- a/licenses/atsas +++ /dev/null @@ -1,211 +0,0 @@ -ACADEMIC SOFTWARE LICENSE AGREEMENT FOR END-USERS AT PUBLIC FUNDED ACADEMIC, -EDUCATION OR RESEARCH INSTITUTIONS FOR THE USE OF ATSAS 2.6 - -By clicking the Acceptance button for the ATSAS 2.6 Software ("Licensed -Software"), you are consenting to be bound by and become a party to this -agreement as the "Licensee". If you do not agree to all of the terms of -this agreement, you must not click the Acceptance button, not install -the product nor use the product, and you do not become a LICENSEE under -this agreement. - -If you are not a member of a public funded Academic and/or Education and/ -or Research Institution you must obtain a commercial license from EMBLEM -(Info@embl-em.de). - -This software license agreement is entered into by and between EMBL Enter- -prise Management GmbH (hereinafter "EMBLEM") located at Boxberg Ring 107, -D-69126 Heidelberg, Germany and the "LICENSEE". - -WHEREAS EMBLEM has the right to license all copyrights and other property -rights in the Licensed Software identified as ATSAS 2.6 and developed by -EMBL (European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 -Heidelberg, Germany), and EMBLEM desires to license the Software so that -it becomes available for public use and benefit. - -WHEREAS LICENSEE is a public funded Academic and/or Education and/or -Research Institution. - -WHEREAS LICENSEE desires to acquire a free non-exclusive license to use -the Software for internal research purposes only. - -NOW, THEREFORE, in consideration of the mutual promises and covenants -contained herein, the parties agree as follows: - -1. Definitions -"Licensed Software" means the current version 2.6 of the ATSAS computer -package developed by ATSAS team at EMBL-Hamburg, collectively the "Authors", -pursuant to this Agreement. - -Any opinion, findings, conclusions or recommendations expressed in the -ATSAS 2.6 suite are those of the authors and do not necessarily reflect -the views of EMBL and EMBLEM. - -2. License -Subject to the terms and conditions of this Agreement a non-exclusive, -non-transferable License to use and copy the Licensed Software is made -available free of charge for the LICENSEE which is a non-profit educational, -academic and/or research institution. The License is only granted for -personal and internal use in research only at one Site, where a Site -is defined as a set of contiguous buildings in one location. 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EMBLEM shall not be liable for any liability or -damages with respect to any claim by LICENSEE or any third party on account -of, or arising from the license or use of the Software. - -Should the Licensed Software prove defective in any respect, LICENSEE and -not LICENSOR or it's affiliates should assume the entire cost of any service -and repair. This disclaimer of warranty constitutes an essential part of -this agreement. No use of the licensed product is authorized hereunder except -under this disclaimer. - -In no event will LICENSOR or its affiliates be liable for any indirect, -special, incidental or consequential damages arising out of the use of -or inability to use the product, including, without limitation, damages -for lost profits, loss of goodwill, work stoppage, computer failure or -malfunction, or any and all other commercial damages or losses, even if -advised of the possibility thereof, and regardless of the legal or -equitable theory (contract, tort or otherwise) upon which the claim -is based. - -10. Promotional Advertising & References -LICENSEE may not use the name "ATSAS" in its promotional advertising, product -literature, and other similar promotional materials to be disseminated to the -public or any portion thereof. LICENSEE agrees not to identify EMBL in any -promotional advertising or other promotional materials to be disseminated to -the public, or any portion thereof without EMBLEM's prior written consent. -LICENSEE agrees that any reference to the software for crystallographic -computations will cite one or more publications as set forth in the manual -and in agreement with common scientific practice. EMBLEM or EMBL shall not -use LICENSEE's name in publicity or advertising involving this Agreement or -otherwise without LICENSEE's prior written consent which may be withheld at -LICENSEE's sole discretion. - - -11. Term -This Agreement and the license rights granted herein shall become effective -as of the date this Agreement is executed by both parties and shall be -perpetual unless terminated in accordance with this Section. - -EMBLEM may terminate this Agreement at any time. - -Either party may terminate this Agreement at any time effective upon the -other party's breach of any agreement, covenant, or representation made -in this Agreement, such breach remaining uncorrected sixty (60) days after -written notice thereof. - -LICENSEE shall have the right, at any time, to terminate this Agreement -without cause by written notice to EMBLEM specifying the date of termination. - -Upon termination, LICENSEE shall destroy all full and partial copies of the -Licensed Software - -12. Governing Law -This Agreement shall be construed in accordance with the laws of Germany. - -13. General -The parties agree that this Agreement is the complete and exclusive agreement -among the parties and supersedes all proposals and prior agreements whether -written or oral, and all other communications among the parties relating to -the subject matter of this Agreement. This Agreement cannot be modified except -in writing and signed by both parties. Failure by either party at any time to -enforce any of the provisions of this Agreement shall not constitute a waiver -by such party of such provision nor in any way affect the validity of this -Agreement. - -The invalidity of singular provisions does not affect the validity of the -entire understanding. The parties are obligated, however, to replace the -invalidprovisions by a regulation which comes closest to the economic -intent of the invalid provision. 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IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY ACTUAL, - DIRECT, INDIRECT, SPECIAL, CONSEQUENTIAL, OR INCIDENTAL DAMAGES, - HOWEVER CAUSED, INCLUDING, WITHOUT LIMITATION, ANY DAMAGES ARISING OUT - OF THE USE OR OPERATION OF THE SOFTWARE, LOSS OF USE OF THE SOFTWARE, - OR DAMAGE OF ANY SORT TO THE USER. - -- YOU AGREE THAT ANY REPORTS OR PUBLICATION OF RESULTS OBTAINED WITH - THE SOFTWARE WILL ACKNOWLEDGE ITS USE BY CITATION OF THE FOLLOWING - ARTICLE: - - 'COMBINING EFFICIENT CONFORMATIONAL SAMPLING WITH A - DEFORMABLE ELASTIC NETWORK MODEL FACILITATES STRUCTURE - REFINEMENT AT LOW RESOLUTION'. - G.F.SCHRODER, A.T.BRUNGER, AND M.LEVITT - STRUCTURE, VOL 15, 1630-1641, (2007) - - diff --git a/licenses/gDEBugger b/licenses/gDEBugger deleted file mode 100644 index 0a1588503..000000000 --- a/licenses/gDEBugger +++ /dev/null @@ -1,232 +0,0 @@ -END USER LICENSE AGREEMENT -AMD gDEBugger SOFTWARE -(No Redistribution) -IMPORTANT-READ CAREFULLY: This is a legal agreement ("Agreement") between you -(either an individual or an entity on whose behalf you sign this Agreement) -("You") and Advanced Micro Devices, Inc., related companies and affiliates -("AMD"). Do not install, copy or use the enclosed Materials (defined below), -until You have carefully read and agreed to the following terms and conditions. - If You do not agree to the terms of this Agreement including the collection, -transmission and storage of Your personal information, do not install, copy or -use the Materials or any portion thereof. By loading or using the Materials -provided herewith You agree to all of the terms of this Agreement. - -1. USE: - a. Subject to the terms and conditions of this Agreement, AMD -grants You the following non-exclusive, non-transferable, royalty-free, -limited, copyright license to (1) install, copy and use the object code version -of the gDEBugger software and materials associated with this Agreement, -including without limitation, the user guide and other documentation, -(collectively, "Materials") for internal testing, debugging and application -profiling, and (2) modify the gDEBugger software for Your internal use and -reverse engineer only for debugging such modifications. - b. You may make a limited number of copies of the object code -version of the Materials only as required for back-up purposes. In making -copies of the Materials for back-up purposes, You agree to include all -copyright legends and other legal notices that may appear in the Materials, as -well as this Agreement in its entirety. Except for the limited license granted -herein, You shall have no other rights in the Materials, whether express, -implied, arising by estoppel or otherwise. - c. AMD reserves the right to replace, modify or upgrade the -Materials at any time. AMD may also offer You a replacement or modified -version of the Materials. AMD reserves the right to charge for such -replacement, modification or upgrade. Any such replacement or modified -Materials code or upgrade to the Materials offered to You by AMD shall be -considered part of the Materials and subject to the terms of this Agreement -(unless this Agreement is superseded by a further Agreement accompanying such -replacement or modified version of or upgrade to the Materials). In the event -that AMD offers a replacement or modified version of or any upgrade to the -Materials, (i) Your continued use of the Materials is conditioned on Your -acceptance of such replacement or modified version of or upgrade to the -Materials and any accompanying superseding Agreement; and (ii) in the case of -the replacement or modified Materials, Your use of all prior versions of the -Materials is terminated. - d. You do not have the right to (i) distribute, rent, lease, sell, -sublicense, assign, or otherwise transfer the Materials, in whole or in part, -to third parties for commercial or for non-commercial use; (ii) modify, -disassemble, reverse engineer, or decompile the Materials, or otherwise reduce -any part of the Materials to any human readable form, except as stated in -Section 1(a)(2); (iii) make the Materials available to others in a service -bureau arrangement or for any similar commercial time-sharing; or (iv) transfer -the Materials to any third party for outsourcing or any other purpose without -the express prior written consent of AMD. All rights in and to the Materials -not expressly granted to You in this Agreement, including rights to trademarks -and patents, are reserved to AMD and its licensor(s). The Materials are -licensed and not sold. - e. AMD is under no obligation to support or provide maintenance -for the Materials or to provide any updates, modifications, enhancements or -upgrades to You. - -2. FEEDBACK: You may provide AMD feedback, suggestions or opinions as to -the Materials, its features, and desired enhancements or changes. If You -provide feedback, suggestions or opinions to AMD regarding any new features, -use, functionality, or change to the Materials or any items related to the -Materials, You hereby agree to grant, and do grant, AMD all rights needed for -AMD to incorporate and commercialize any new feature, use, functionality, or -change at no charge or encumbrance to AMD. You agree that AMD may disclose such -feedback, suggestions or opinions to any third party in any manner. You also -agree that AMD has the ability to: (i) license any of the foregoing rights in -any feedback, suggestions or opinions; and (ii) AMD can use the feedback in -their products or services in any form to any third party without restriction -at no charge or encumbrance to AMD and its parent company and related -companies. - -3. OWNERSHIP AND COPYRIGHT OF MATERIALS: You agree that the Materials are -owned by AMD and/or AMD's licensor(s), and are protected by United States and -foreign intellectual property laws (e.g. patent and copyright laws) and -international treaty provisions. You will not remove the copyright notice(s) -from the Materials. You agree to prevent any unauthorized copying of the -Materials. All title and copyrights in and to the Materials, all copies -thereof (in whole or in part, and in any form), and all rights therein shall -remain vested in AMD and/or licensor(s). Except as expressly provided herein, -AMD does not grant any express or implied right to You under AMD and/or its -licensor(s) patents, copyrights, trademarks, know how or trade secret -information. - -4. CONFIDENTIAL INFORMATION: You shall refrain from disclosing any -Confidential Information to third parties and will take reasonable security -precautions, at least as great as the precautions it takes to protect Your own -confidential information, but no less than reasonable care, to keep -confidential the Confidential Information. For the purposes hereof, -"Confidential Information" means all information disclosed between the parties -in connection with this Agreement, including the Materials and any other -business or technical information provided to You by AMD. You will only -disclose the Confidential Information to Your employees or on-site -subcontractors (i) who have a need to know in furtherance of this Agreement; -and (ii) who have signed a confidentiality agreement with You at least as -restrictive as this Agreement. If at any future time AMD, directly or -indirectly, discloses any other related technology or information to You, -including without limitation any updates, modifications, enhancements or - upgrades of the Materials, such disclosure will also be deemed to be -confidential, part of the Materials and will be subject to the provisions of -this Agreement. You may disclose Confidential Information in accordance with a -judicial or other governmental order, provided that You give AMD reasonable -notice prior to such disclosure to allow AMD a reasonable opportunity to seek a -protective order or equivalent. - -5. NOTICES: To the extent that the Materials include any software licensed -under the FreeImage License, notice is hereby given that any terms that differ -in this Agreement from the terms in FreeImage license are offered by AMD alone -and not any developer or contributor to the FreeImage code or project. The -gDEBugger software uses the Qt library. Use of the Qt library is governed by -the GNU Lesser General Public License version 2.1 (LGPL v 2.1). - -6. LINKS: AMD may create links to other web sites within the Materials. - AMD will make a reasonable effort to link only to sites that have practices to -maintain individual's right to privacy. AMD cannot control these links and is -not responsible for any content appearing on these sites. - -7. COMMUNICATIONS AND YOUR PERSONAL INFORMATION: During use, the Materials -may send information about You, the Materials and the system to AMD. This -information may include the version and other support metadata about the -Materials, computer hardware, software, the Internet protocol address of the -computer and your name, company name (if applicable), e-mail, phone number and -other personal information submitted by You. AMD may use this information to -identify or contact You. By using the Materials, You consent to the -collection, transmission and storage of Your information and AMD's use of Your -information. If You do not consent to the transmission of this information do -not install or use the Materials. You can view AMD's privacy statement at: -http://www.amd.com/us/aboutamd/Pages/privacy.aspx - -8. WARRANTY DISCLAIMER: You expressly acknowledge and agree that use of -the Materials are at Your sole risk. The Materials are provided "AS IS" and -without warranty of any kind and AMD EXPRESSLY DISCLAIMS ALL WARRANTIES, -EXPRESS AND IMPLIED, INCLUDING, BUT NOT LIMITED TO, ANY IMPLIED WARRANTIES OF -MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE OR NON-INFRINGEMENT. AMD -DOES NOT WARRANT THAT THE FUNCTIONS CONTAINED IN THE MATERIALS WILL MEET YOUR -REQUIREMENTS, OR THAT THE OPERATION OF THE MATERIALS WILL BE UNINTERRUPTED OR -ERROR-FREE, OR THAT DEFECTS IN THE MATERIALS WILL BE CORRECTED. THE ENTIRE -RISK AS TO THE RESULTS AND PERFORMANCE OF THE MATERIALS IS ASSUMED BY YOU. - FURTHERMORE, AMD DOES NOT WARRANT OR MAKE ANY REPRESENTATIONS REGARDING THE -USE OR THE RESULTS OF THE USE OF THE MATERIALS IN TERMS OF THEIR CORRECTNESS, -ACCURACY, RELIABILITY, CURRENT-NESS, OR OTHERWISE. NO ORAL OR WRITTEN -INFORMATION OR ADVICE GIVEN BY AMD OR AMD PARTIES (DEFINED BELOW) SHALL CREATE -A WARRANTY OR IN ANY WAY INCREASE - THE SCOPE OF THIS WARRANTY. SHOULD THE MATERIALS PROVE DEFECTIVE, YOU -(AND NOT AMD OR AMD PARTIES) ASSUME THE ENTIRE COST OF ALL NECESSARY SERVICING, -REPAIR OR CORRECTION. THE MATERIALS ARE NOT INTENDED FOR USE IN MEDICAL, LIFE -SAVING OR LIFE SUSTAINING, NUCLEAR OR WEAPONS RELATED APPLICATIONS. SOME -JURISDICTIONS DO NOT ALLOW THE EXCLUSION OF IMPLIED WARRANTIES, SO THE ABOVE -EXCLUSION MAY NOT APPLY TO YOU. - -9. INDEMNIFICATION: You will indemnify, defend, and hold AMD Parties -(defined below) harmless from any and all actions, causes of action, claims, -demands, costs, liabilities, expenses and damages, including reasonable -attorneys' fees, arising out of or in connection with any breach of Your -obligations under this Agreement. - -10. LIMITATION OF LIABILITY: IN NO EVENT SHALL AMD OR ANY OF THEIR -DIRECTORS, OFFICERS, EMPLOYEES AND AGENTS, OR ANY OF THEIR SUPPLIERS OR -LICENSORS ("AMD PARTIES") BE LIABLE TO YOU OR ANY THIRD PARTIES IN RECEIPT OF -THE MATERIALS UNDER ANY THEORY OF LIABILITY, WHETHER EQUITABLE, LEGAL OR COMMON -LAW ACTION ARISING HEREUNDER FOR CONTRACT, STRICT LIABILITY, INDEMNITY, TORT -(INCLUDING NEGLIGENCE), OR OTHERWISE FOR DAMAGES WHICH, IN THE AGGREGATE EXCEED -ONE HUNDRED DOLLARS ($100.00). IN NO EVENT SHALL AMD PARTIES BE LIABLE FOR ANY -CONSEQUENTIAL, INCIDENTAL, PUNITIVE OR SPECIAL DAMAGES, INCLUDING, BUT NOT -LIMITED TO, LOSS OF PROFITS, BUSINESS INTERRUPTION, OR LOSS OF INFORMATION -ARISING OUT OF THE USE OF OR INABILITY TO USE THE MATERIALS, EVEN IF AMD -PARTIES HAVE BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. BY USING THE -MATERIALS WITHOUT CHARGE, YOU ACCEPT THIS ALLOCATION OF RISK. Because some -jurisdictions prohibit the exclusion or limitation of liability for -consequential or incidental damages, the above limitation may not apply to -You. - -11. EXPORT RESTRICTIONS: You shall adhere to all applicable U.S., European, -and other export laws, including but not limited to the U.S. Export -Administration Regulations ("EAR"), (15 C.F.R. Sections 730 through 774), and -E.U. Council Regulation (EC) No 1334/2000 of 22 June 2000. Further, pursuant -to Section 740.6 of the EAR, You hereby certify that, except pursuant to a -license granted by the United States Department of Commerce Bureau of Industry -and Security or as otherwise permitted pursuant to a License Exception under -the EAR, You will not (1) export, re-export or release to a national of a -country in Country Groups D:1, E:1 or E:2 any restricted technology, Materials, -or source code it receives from AMD, or (2) export to Country Groups D:1, E: -1 or E:2 the direct product of such technology or Materials, if such foreign -produced direct product is subject to national security controls as identified -on the Commerce Control List (currently found in Supplement 1 to Part 774 of -EAR). For the most current - Country Group listings, or for additional information about the EAR or -Your obligations under those regulations, please refer to the U.S. Bureau of -Industry and Security's website at http://www.bis.doc.gov/. - -12. U.S. GOVERNMENT RESTRICTED RIGHTS: The Materials are provided with -"RESTRICTED RIGHTS." Use, duplication, or disclosure by the Government is -subject to the restrictions as set forth in FAR 52.227-14 and DFAR252.227-7013, -et seq., or its successor. Use of the Materials by the Government constitutes -acknowledgement of AMD's proprietary rights in them. - -13. TERMINATION OF LICENSE: This Agreement is effective until terminated. - You can terminate this Agreement at any time by destroying the Materials, and -all copies You have made. AMD may terminate this Agreement upon thirty (30) -days' prior notice with or without cause. This Agreement will terminate -immediately without notice from AMD if You fail to comply with any provision of -this Agreement. Upon termination You must destroy the Materials and all copies -You have made. - -14. SURVIVAL: Sections 1(c)-(e) (and Section 1(a)(2) only as it applies to -section 1(d(ii)), 2-18, inclusive, shall survive any expiration or termination -of this Agreement. - -15. APPLICABLE LAWS: Any claim arising under or relating to this Agreement -shall be governed by and construed in accordance with the substantive laws of -the State of California, without regard to principles of conflict of laws. - Each party hereto submits to the jurisdiction of the state and federal -courts of Santa Clara County and the Northern District of California for the -purposes of all legal proceedings arising out of or relating to this Agreement -or the subject matter hereof. Each party waives any objection which it may -have to contest such forum. - -16. SEVERABILITY: Should any term of this Agreement be declared void or -unenforceable by any court of competent jurisdiction, such declaration shall -have no effect on the remaining terms hereof. - -17. NO WAIVER: The failure of either party to enforce any rights granted -hereunder or to take action against the other party in the event of any breach -hereunder shall not be deemed a waiver by that party as to subsequent -enforcement of rights or subsequent actions in the event of future breaches. - -18. ENTIRE AGREEMENT: This Agreement constitutes the entire agreement -between the parties and supersedes any prior or contemporaneous oral or written -agreements with respect to the subject matter of this Agreement. - -Rev. June 2011 - 2 - END USER LICENSE AGREEMENT diff --git a/licenses/hoomd-blue b/licenses/hoomd-blue deleted file mode 100644 index 4e38f05d2..000000000 --- a/licenses/hoomd-blue +++ /dev/null @@ -1,46 +0,0 @@ -Highly Optimized Object-oriented Many-particle Dynamics -- Blue Edition -(HOOMD-blue) Open Source Software License Copyright 2009-2014 The Regents of -the University of Michigan All rights reserved. - -HOOMD-blue may contain modifications ("Contributions") provided, and to which -copyright is held, by various Contributors who have granted The Regents of the -University of Michigan the right to modify and/or distribute such Contributions. - -You may redistribute, use, and create derivate works of HOOMD-blue, in source -and binary forms, provided you abide by the following conditions: - -* Redistributions of source code must retain the above copyright notice, this -list of conditions, and the following disclaimer both in the code and -prominently in any materials provided with the distribution. - -* Redistributions in binary form must reproduce the above copyright notice, this -list of conditions, and the following disclaimer in the documentation and/or -other materials provided with the distribution. - -* All publications and presentations based on HOOMD-blue, including any reports -or published results obtained, in whole or in part, with HOOMD-blue, will -acknowledge its use according to the terms posted at the time of submission on: -http://codeblue.umich.edu/hoomd-blue/citations.html - -* Any electronic documents citing HOOMD-Blue will link to the HOOMD-Blue website: -http://codeblue.umich.edu/hoomd-blue/ - -* Apart from the above required attributions, neither the name of the copyright -holder nor the names of HOOMD-blue's contributors may be used to endorse or -promote products derived from this software without specific prior written -permission. - -Disclaimer - -THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER AND CONTRIBUTORS ``AS IS'' AND -ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED -WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND/OR ANY -WARRANTIES THAT THIS SOFTWARE IS FREE OF INFRINGEMENT ARE DISCLAIMED. - -IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, -INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, -BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, -DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF -LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE -OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF -ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/licenses/mpich b/licenses/mpich deleted file mode 100644 index a9216d495..000000000 --- a/licenses/mpich +++ /dev/null @@ -1,39 +0,0 @@ - - COPYRIGHT - -The following is a notice of limited availability of the code, and disclaimer -which must be included in the prologue of the code and in all source listings -of the code. - -Copyright Notice - + 2002 University of Chicago - -Permission is hereby granted to use, reproduce, prepare derivative works, and -to redistribute to others. This software was authored by: - -Mathematics and Computer Science Division -Argonne National Laboratory, Argonne IL 60439 - -(and) - -Department of Computer Science -University of Illinois at Urbana-Champaign - - - GOVERNMENT LICENSE - -Portions of this material resulted from work developed under a U.S. -Government Contract and are subject to the following license: the Government -is granted for itself and others acting on its behalf a paid-up, nonexclusive, -irrevocable worldwide license in this computer software to reproduce, prepare -derivative works, and perform publicly and display publicly. - - DISCLAIMER - -This computer code material was prepared, in part, as an account of work -sponsored by an agency of the United States Government. Neither the United -States, nor the University of Chicago, nor any of their employees, makes any -warranty express or implied, or assumes any legal liability or responsibility -for the accuracy, completeness, or usefulness of any information, apparatus, -product, or process disclosed, or represents that its use would not infringe -privately owned rights. diff --git a/licenses/noweb b/licenses/noweb new file mode 100644 index 000000000..e1f338458 --- /dev/null +++ b/licenses/noweb @@ -0,0 +1,22 @@ +Noweb is copyright 1989-2000 by Norman Ramsey. All rights reserved. + +Noweb is protected by copyright. It is not public-domain +software or shareware, and it is not protected by a ``copyleft'' +agreement like the one used by the Free Software Foundation. + +Noweb is available free for any use in any field of endeavor. You may +redistribute noweb in whole or in part provided you acknowledge its +source and include this COPYRIGHT file. You may modify noweb and +create derived works, provided you retain this copyright notice, but +the result may not be called noweb without my written consent. + +You may sell noweb if you wish. For example, you may sell a CD-ROM +including noweb. + +You may sell a derived work, provided that all source code for your +derived work is available, at no additional charge, to anyone who buys +your derived work in any form. You must give permisson for said +source code to be used and modified under the terms of this license. +You must state clearly that your work uses or is based on noweb and +that noweb is available free of change. You must also request that +bug reports on your work be reported to you. diff --git a/licenses/oncotator b/licenses/oncotator deleted file mode 100644 index 0528987f4..000000000 --- a/licenses/oncotator +++ /dev/null @@ -1,46 +0,0 @@ -By downloading the PROGRAM you agree to the following terms of use: - -BROAD INSTITUTE SOFTWARE LICENSE AGREEMENT -FOR ACADEMIC NON-COMMERCIAL RESEARCH PURPOSES ONLY - -This Agreement is made between the Broad Institute, Inc. with a principal address at 7 Cambridge Center, Cambridge, MA 02142 ("BROAD") and the LICENSEE and is effective at the date the downloading is completed ("EFFECTIVE DATE"). - -WHEREAS, LICENSEE desires to license the PROGRAM, as defined hereinafter, and BROAD wishes to have this PROGRAM utilized in the public interest, subject only to the royalty-free, nonexclusive, nontransferable license rights of the United States Government pursuant to 48 CFR 52.227-14; and - -WHEREAS, LICENSEE desires to license the PROGRAM and BROAD desires to grant a license on the following terms and conditions. - -NOW, THEREFORE, in consideration of the promises and covenants made herein, the parties hereto agree as follows: - -1. DEFINITIONS -1.1 "PROGRAM" shall mean the object code and source code known as Oncotator 1.0 and related documentation, if any, as they exist on the EFFECTIVE DATE and can be downloaded from http://www.broadinstitute.org/cancer/cga/oncotator on the EFFECTIVE DATE. BROAD acknowledges that the PROGRAM employs one or more public domain code(s) that are freely available for public use. - -2. LICENSE -2.1 Grant. Subject to the terms of this Agreement, BROAD hereby grants to LICENSEE, solely for academic non-commercial research purposes, a non-exclusive, non-transferable license to: (a) download, execute and display the PROGRAM and (b) create bug fixes and modify the PROGRAM. LICENSEE hereby automatically grants to BROAD a non-exclusive, royalty-free, irrevocable license to any LICENSEE bug fixes or modifications to the PROGRAM with unlimited rights to sublicense and/or distribute. LICENSEE agrees to provide any such modifications and bug fixes to BROAD promptly upon their creation. The LICENSEE may apply the PROGRAM in a pipeline to data owned by users other than the LICENSEE and provide these users the results of the PROGRAM provided LICENSEE does so for academic non-commercial purposes only. For clarification purposes, academic sponsored research is not a commercial use under the terms of this Agreement. -2.2 No Sublicensing or Additional Rights. LICENSEE shall not sublicense or distribute the PROGRAM, in whole or in part, without prior written permission from BROAD. LICENSEE shall ensure that all of its users agree to the terms of this Agreement. LICENSEE further agrees that it shall not put the PROGRAM on a network, server, or other similar technology that may be accessed by anyone other than the LICENSEE and its employees and users who have agreed to the terms of this agreement. -2.3 License Limitations. Nothing in this Agreement shall be construed to confer any rights upon LICENSEE by implication, estoppel, or otherwise to any computer software, trademark, intellectual property, or patent rights of BROAD, or of any other entity, except as expressly granted herein. LICENSEE agrees that the PROGRAM, in whole or part, shall not be used for any commercial purpose, including without limitation, as the basis of a commercial software or hardware product or to provide services. LICENSEE further agrees that the PROGRAM shall not be copied or otherwise adapted in order to circumvent the need for obtaining a license for use of the PROGRAM. - -3. OWNERSHIP OF INTELLECTUAL PROPERTY -LICENSEE acknowledges that title to the PROGRAM shall remain with BROAD. The PROGRAM is marked with the following BROAD copyright notice and notice of attribution to contributors. LICENSEE shall retain such notice on all copies. LICENSEE agrees to include appropriate attribution if any results obtained from use of the PROGRAM are included in any publication. - -Copyright 2014 Broad Institute, Inc. -Notice of attribution: The Oncotator 1.0 program was made available through the generosity of the Broad Institute, Inc. - -LICENSEE shall not use any trademark or trade name of BROAD, or any variation, adaptation, or abbreviation, of such marks or trade names, or any names of officers, faculty, students, employees, or agents of BROAD except as states above for attribution purposes. - -4. INDEMNIFICATION -LICENSEE shall indemnify, defend, and hold harmless BROAD, and their respective officers, faculty, students, employees, associated investigators and agents, and their respective successors, heirs and assigns, ("Indemnitees"), against any liability, damage, loss, or expense (including reasonable attorney fees and expenses) incurred by or imposed upon any of the Indemnitees in connection with any claims, suits, actions, demands or judgments arising out of any theory of liability (including, without limitation, actions in the form of tort, warranty, or strict liability and regardless of whether such action has any factual basis) pursuant to any right or license granted under this Agreement. - -5. NO REPRESENTATIONS OR WARRANTIES -THE PROGRAM IS DELIVERED "AS IS." BROAD MAKES NO REPRESENTATIONS OR WARRANTIES OF ANY KIND CONCERNING THE PROGRAM OR THE COPYRIGHT, EXPRESS OR IMPLIED, INCLUDING, WITHOUT LIMITATION, WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS, WHETHER OR NOT DISCOVERABLE. BROAD EXTENDS NO WARRANTIES OF ANY KIND AS TO PROGRAM CONFORMITY WITH WHATEVER USER MANUALS OR OTHER LITERATURE MAY BE ISSUED FROM TIME TO TIME. IN NO EVENT SHALL BROAD OR ITS RESPECTIVE DIRECTORS, OFFICERS, EMPLOYEES, AFFILIATED INVESTIGATORS AND AFFILIATES BE LIABLE FOR INCIDENTAL OR CONSEQUENTIAL DAMAGES OF ANY KIND, INCLUDING, WITHOUT LIMITATION, ECONOMIC DAMAGES OR INJURY TO PROPERTY AND LOST PROFITS, REGARDLESS OF WHETHER BROAD SHALL BE ADVISED, SHALL HAVE OTHER REASON TO KNOW, OR IN FACT SHALL KNOW OF THE POSSIBILITY OF THE FOREGOING. - -6. 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Any waiver of any rights or failure to act in a specific instance shall relate only to such instance and shall not be construed as an agreement to waive any rights or fail to act in any other instance, whether or not similar. This Agreement constitutes the entire agreement among the parties with respect to its subject matter and supersedes prior agreements or understandings between the parties relating to its subject matter. -7.6 Binding Effect; Headings. This Agreement shall be binding upon and inure to the benefit of the parties and their respective permitted successors and assigns. All headings are for convenience only and shall not affect the meaning of any provision of this Agreement. -7.7 Governing Law. This Agreement shall be construed, governed, interpreted and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A., without regard to conflict of laws principles. diff --git a/licenses/opal b/licenses/opal deleted file mode 100644 index 182ba127f..000000000 --- a/licenses/opal +++ /dev/null @@ -1,38 +0,0 @@ -COPYRIGHT AND LICENCE - -Copyright (c) 2005-2008 The Regents of the University of California. -All rights reserved. - -Redistribution and use in source and binary forms, with or -without modification, are permitted provided that the following -conditions are met: - -1. Redistributions of source code must retain the above copyright -notice, this list of conditions and the following disclaimer. - -2. Redistributions in binary form must reproduce the above -copyright notice, this list of conditions and the following -disclaimer in the documentation and/or other materials provided -with the distribution. - -3. All advertising materials mentioning features or use of this -software must display the following acknowledgement: This product -includes software developed by the San Diego Supercomputer Center -, the National Biomedical Computation Resource, and their contributors. - -4. Neither the names of the Centers nor the names of the contributors -may be used to endorse or promote products derived from this -software without specific prior written permission. - -THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS'' -AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED -TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A -PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS -OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, -SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT -LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF -USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED -AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT -LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN -ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE -POSSIBILITY OF SUCH DAMAGE. diff --git a/licenses/phaser b/licenses/phaser deleted file mode 100644 index e03a57a14..000000000 --- a/licenses/phaser +++ /dev/null @@ -1,280 +0,0 @@ -Software: PHASER -Version: 1.3 - -This End User Licence Agreement is a legal agreement between you the -"Licensee" (in your capacity as an individual and as an agent for your -institution or other entity) -and -Cambridge University Technical Services Limited ("CUTS") whose registered -office is at 16 Mill Lane, Cambridge, CB2 1SB UK. - -CUTS is a company wholly owned by the Chancellor, Masters and Scholars of the -University of Cambridge which holds title in intellectual property rights -including in the Software and carries on trading, business and technology -transfer transactions on behalf of the University of Cambridge. - -CUTS is the entire legal and beneficial owner and licensor of the Software and -desires to grant on the Software non-exclusive, restricted-use licences for -in-house use to appropriate academic and non-commercial third parties. - -Downloading the Software from its internet publication site (restricted access -via user ID and password) at -http://www-structmed.cimr.cam.ac.uk/phaser/download.html, installing, or -using of the Software by you indicates your agreement to be bound by the terms -and conditions of this Agreement. 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DEFINITIONS - -1.1 In this Agreement the following words and phrases shall, unless the -context otherwise requires, have the following meanings: - -Commencement Date means the initial date of download of the Software from its -internet publication site by the Licensee; - -Derivatives means computer programs in machine readable object code or source -code form developed or otherwise acquired by the Licensee which are a -modification of, enhancement to, derived from or based upon the Software; - -Intellectual Property Rights means all patents, copyrights, design rights, -trade marks, service marks, trade secrets, know-how, database rights and other -rights in the nature of intellectual property rights (whether registered or -unregistered) and all applications for the same, anywhere in the world; - -Parties means CUTS and the Licensee and "Party" shall mean either of them; - -Software means the computer program and version listed at the head of this -Agreement. - -2. GRANT OF LICENCE - -2.1 CUTS hereby grants to the Licensee and the Licensee hereby accepts a -non-exclusive, non-transferable, royalty-free licence, commencing on the -Commencement Date and for a term of five years therefrom, to download, install -and use the Software subject to the following terms and conditions: - -(a) the Licensee may use the Software solely for its internal use and the -Licensee shall not sell, give, disclose, lend, transfer, sublicense or -otherwise distribute the Software to any third party, or allow the Software to -be accessed over the internet or in any other manner that would allow access -to the Software by anyone other than the Licensee's employees (and consultants -and contractors provided such use is solely for the Licensee's internal use -and subject to the provisions of this Agreement); - -(b) the Licensee may create Derivatives solely for its own internal use but -shall not distribute the Software or any Derivatives in whole or in part to -any third party; - -(c) the Software may be installed and used only on computers owned or leased -by the Licensee; - -(d) the Licensee may copy the Software solely to the extent necessary to -exercise this Licence, and for backup, disaster recovery and archival -purposes, provided that the Licensee shall retain on all copies of the -Software the following copyright notice: © 2000-2005. Cambridge University -Technical Services Limited. All rights reserved. - -3. INTELLECTUAL PROPERTY RIGHTS - -3.1 The Licensee acknowledges that all Intellectual Property Rights in the -Software and any copies thereof belong and shall belong to CUTS and the -Licensee shall have no rights in or to the Software other than the right to -use it in accordance with the terms of the Licence in this Agreement. - -3.2 Title to and ownership of any portion of the Software incorporated into -Derivatives shall at all times remain with CUTS and the Licensee shall not -have any title or ownership interest therein. - -3.3 Title to and ownership of any portion of Derivatives created by the -Licensee and not owned by CUTS pursuant to Clauses 3.1 and 3.2 above shall be -held by the Licensee. Nothing contained in this Licence shall be construed to -limit CUTS rights to modify or to develop other derivatives of the Software -which are similar to or offer the same or similar improvements as any -Derivatives developed by the Licensee. - -3.4 Error fixes, bug fixes, technical suggestions, comments and suggested -improvements to the Software and its code are welcome by the authors of the -Software and CUTS, and in agreeing to provide these to the authors or to CUTS -the Licensee hereby assigns the Intellectual Property Rights in error fixes, -bug fixes, or technical improvements to CUTS which are communicated in any -manner or medium to the authors of the Software or CUTS with a reservation of -use of those improvements and suggestions by the Licensee subject to the terms -and conditions of the Licence in this Agreement. - -4. NO MAINTENANCE OR SUPPORT - -4.1 CUTS is under no obligation whatsoever to: - -(a) provide maintenance or support for the Software; or - -(b) notify the Licensee of error fixes, bug fixes, patches, or upgrades to -the features, functionality or performance of the Software ("Enhancements") -(if any), whether developed by CUTS or third parties. If, in its sole -discretion, CUTS makes an Enhancement available to the Licensee and CUTS does -not separately enter into a written licence agreement with the Licensee -relating to such bug fix, patch or upgrade, then it shall be deemed -incorporated into the Software and subject to this Agreement. - -5. DISCLAIMER OF WARRANTIES - -5.1 CUTS warrants that the Software will conform substantially with its -functional specifications. Otherwise the Software is supplied "as is" without -warranty of any kind. CUTS, its licensors and its employees: - -(a) disclaim any warranties, express or implied, including but not limited to -any implied warranties of merchantability, fitness for a particular purpose, -title or non-infringement of third party rights; - -(b) do not assume any legal liability or responsibility for the accuracy, -completeness, or usefulness of the Software; - -(c) do not represent that use of the Software will not infringe privately -owned rights; - -(d) do not warrant that the Software will function uninterrupted, that it is -error-free or that any errors will be corrected. - -6. LIMITATION OF LIABILITY - -6.1 The Software is provided for academic non-commercial purposes only. -Therefore, in no event will CUTS or its licensors or its employees be liable -to the Licensee for any indirect, incidental, consequential, special or -punitive damages of any kind or nature, including but not limited to loss of -profits or loss of data, for any reason whatsoever, whether such liability is -asserted on the basis of contract, tort (including negligence or strict -liability), or otherwise, even if CUTS has been warned of the possibility of -such loss or damages. - -6.2 The limitations and exclusions in this Agreement shall not apply in -respect of claims for personal injury or death caused by the negligence of -CUTS, its licensors or its employees or in respect of fraud or fraudulent -misrepresentation. - -7. INDEMNITY - -7.1 The Licensee shall indemnify CUTS, the Software authors, the Software -sponsors, and their agents, officers, and employees, against any and all -claims, suits, losses, damages, costs, fees, and expenses arising out of or in -connection with any claim or threatened claim by any third party relating to -or arising from the use of the Software by the Licensee. The Licensee shall -pay all costs incurred by CUTS in enforcing this provision. - -8. TERM AND TERMINATION - -8.1 This Agreement and the Licence granted herein shall come into effect -on the Commencement Date and will continue for the duration of five years -therefrom unless terminated by CUTS in accordance with this Agreement. If the -Licensee breaches any term of this Agreement, and fails to cure such breach -within thirty (30) days of the date of written notice, this Agreement shall -immediately terminate. Upon such termination the Licensee shall immediately -cease using the Software, return to CUTS or destroy all copies of the -Software, and provide CUTS with written certification of the Licensee's -compliance with the foregoing. Termination shall not relieve the Licensee -from its obligations arising prior to such termination. Notwithstanding any -provision of this Agreement to the contrary, Sections 3, 5, 6, 7, 8, 9, 10, -13, 14 and 18 shall survive termination of this Agreement. - -9. CONFIDENTIALITY - -9.1 The Licensee agrees and undertakes that during the term of the Licence in -this Agreement and thereafter it will keep confidential all, and will not use -for its own purposes nor without the prior written consent of CUTS disclose to -any third party any information of a confidential nature (including trade -secrets and information of commercial value) which may become known to the -Licensee and which relates to CUTS unless such information is public knowledge -or already known to the Licensee at the time of disclosure or subsequently -becomes public knowledge other by breach of the Licence in this Agreement or -subsequently comes lawfully into the possession of the Licensee from a third -party. - -10. NO SUBLICENSING AND NO ASSIGNMENT - -10.1 The Licensee shall have no right to sub-license or to assign, -transfer, charge or deal in any other manner the benefit or burden of the -Licence in this Agreement in whole or in part or to allow the Software to -become the subject of any charge, lien or encumbrance without the prior -written consent of CUTS such consent may be withheld without giving any -reasons. - -11. WAIVER - -11.1 No forbearance or delay by either party in enforcing its rights will -prejudice or restrict the rights of that party, and no waiver of any such -rights or of any breach of any contractual terms will be deemed to be a waiver -of any other right or of any later breach. - -12. SEVERABILITY - -12.1 If any provision of the Licence in this Agreement is judged to be -illegal or unenforceable, the continuation in full force and effect of the -remainder of the provisions will not be prejudiced. - -13. NO AGENCY OR PARTNERSHIP - -13.1 Nothing contained or implied in this Agreement constitutes a Party the -partner, agent, or legal representative of another party or of the other Party -for any purpose or creates any partnership, agency or trust, and no Party has -any authority to bind the other Party in any way. - -14. THE CONTRACTS (RIGHTS OF THIRD PARTIES) ACT 1999 - -14.1 The Contracts (Rights of Third Parties) Act 1999 shall not apply to -this Agreement and nothing in this Agreement shall confer or purport to confer -on or operate to give any third Party any benefit or any right to enforce any -term of this Agreement. - -15. NOTICES - -15.1 Any notice to be given under this Agreement shall be in writing and -delivered by hand, prepaid registered post or facsimile to a Party at the -address set out at the head of this Agreement or to such other address or fax -number as any Party may specify in writing to another. Notices are deemed to -have been given: - -(a) if delivered by hand, at the time of delivery unless delivered after 5pm -in the place of receipt or on a non-business day, in which case the notice is -deemed to have been given at 9am the next business day; - -(b) if sent by registered post from within the United Kingdom, three -business days after posting (or seven business days if posted from outside the -United Kingdom); and - -(c) if sent by facsimile, at the time the facsimile is received shown in -the transmission report as the time that the whole facsimile was sent unless -received after 5pm in the place of receipt or on a non-business day, in which -case the notice is deemed to have been given at 9am the next business day. -Any notice served by facsimile transmission shall be confirmed by post. - -16. ENTIRE AGREEMENT - -16.1 This Agreement constitutes the entire agreement and understanding of the -Parties and supersedes all negotiations, understandings or previous agreement -between the Parties relating to the subject matter of this Agreement. - -17. GOVERNING LAW - -17.1 This Agreement and any documents to be entered into pursuant to it -shall be governed by and construed in accordance with English law and each -Party irrevocably submits to the exclusive jurisdiction of the courts of -England over any claim or matter arising under or in connection with this -Agreement and the documents entered into pursuant to it. - -18. EXPORT CONTROL REGULATIONS - -18.1 'Export Control Regulations' means any United Nations trade sanctions -or EU or UK legislation or regulation, from time to time in force, which -impose arms embargoes or control of export of goods, technology or software. - -18.2 The Licensee shall ensure that, in using the Software it shall not and -nor shall its employees breach or compromise directly of indirectly compliance -with any Export Control Regulations. - - - -If you have any questions or feedback concerning the Software, contact -University of Cambridge, Department of Haematology, Cambridge Institute for -Medical Research, Wellcome Trust/MRC Building, Cambridge CB2 0XY UK. -Attn: Professor Randy Read, or via email at cimr-phaser@lists.cam.ac.uk - diff --git a/licenses/phaser-com b/licenses/phaser-com deleted file mode 100644 index 3c1b3a03c..000000000 --- a/licenses/phaser-com +++ /dev/null @@ -1,290 +0,0 @@ -Software: PHASER -Version: 1.3 - -This End User Licence Agreement ("Agreement") is a legal agreement between -your company the "Licensee" -and -CAMBRIDGE UNIVERSITY TECHNICAL SERVICES LIMITED ("CUTS") whose registered -office is at 16 Mill Lane, Cambridge, CB2 1SB UK. - -CUTS is a company wholly owned by the Chancellor, Masters and Scholars of the -University of Cambridge which holds title in intellectual property rights -including in the Software and carries on trading, business and technology -transfer transactions on behalf of the University of Cambridge. - -CUTS is the entire legal and beneficial owner and licensor of the Software and -is willing to license use of the Software by the Licensee. As a condition -precedent to the execution and performance of this Licence, the Licensee -(and/or any of its Affiliates, if applicable, the Licensee and its Affiliates -collectively referred to as the "Licensee" for the purposes of this Agreement) -will have paid up annual fees to the PHENIX Industry Consortium for use of -software, including the Software which is the subject of the Licence in this -Agreement, which has been assembled for the PHENIX Industry Consortium. - -Downloading the Software from its internet publication site (restricted access -via user ID and password) at -http://www-structmed.cimr.cam.ac.uk/phaser/download.html, installing, or use -of the Software by the Licensee indicates the Licensee's agreement to be bound -by the terms and conditions of this Agreement. If the Licensee does not agree -to these terms and conditions, the Licensee may not download, install or use -the Software. - -AGREED TERMS - -1. DEFINITIONS - -1.1 In this Agreement the following words and phrases shall, unless the -context otherwise requires, have the following meanings: - -Commencement Date means the initial date of download of the Software from its -internet publication site by the Licensee; - -Derivatives means computer programs in machine readable object code or source -code form developed or otherwise acquired by the Licensee which are a -modification of, enhancement to, derived from or based upon the Software; - -Fee means the annual licence fee payable by the Licensee to the PHENIX -Industry Consortium; - -Intellectual Property Rights means all patents, copyrights, design rights, -trade marks, service marks, trade secrets, know-how, database rights and other -rights in the nature of intellectual property rights (whether registered or -unregistered) and all applications for the same, anywhere in the world; - -Parties means CUTS and the Licensee and "Party" shall mean either of them; - -Software means the computer program and version listed at the head of this -Agreement. - -2. GRANT OF LICENCE - -2.1 In consideration of the Fee, CUTS hereby grants to the Licensee a -non-exclusive, non-transferable, royalty-free licence, commencing on the -Commencement Date and for the duration of payment of the Fee, to download, -install and use the Software subject to the following terms and conditions: - -(a) the Licensee may use the Software solely for its internal use and the -Licensee shall not sell, give, disclose, lend, transfer, sublicense or -otherwise distribute the Software to any third party, or allow the Software to -be accessed over the internet or in any other manner that would allow access -to the Software by anyone other than the Licensee's employees (and consultants -and contractors provided such use is solely for the Licensee's internal use -and subject to the provisions of this Agreement); - -(b) the Licensee may create Derivatives solely for its own internal use but -shall not distribute the Software or any Derivatives in whole or in part to -any third party; - -(c) the Software may be installed and used only on computers owned or leased -by the Licensee; - -(d) the Licensee may copy the Software solely to the extent necessary to -exercise this Licence, and for backup, disaster recovery and archival -purposes, provided that the Licensee shall retain on all copies of the -Software the following copyright notice: © 2000-2005. Cambridge University -Technical Services Limited. All rights reserved. - -3. INTELLECTUAL PROPERTY RIGHTS - -3.1 The Licensee acknowledges that all Intellectual Property Rights in the -Software belong and shall belong to CUTS and the Licensee shall have no rights -in or to the Software other than the right to use it in accordance with the -terms of the Licence in this Agreement. - -3.2 Title to and ownership of any portion of the Software incorporated into -Derivatives shall at all times remain with CUTS and the Licensee shall not -have any title or ownership interest therein. - -3.3 Title to and ownership of any portion of Derivatives created by the -Licensee and not owned by CUTS pursuant to Clauses 3.1 and 3.2 above shall be -held by the Licensee. Nothing contained in this Licence shall be construed to -limit CUTS rights to modify or to develop other derivatives of the Software -which are similar to or offer the same or similar improvements as any -Derivatives developed by the Licensee. - -3.4 Error fixes, bug fixes, technical suggestions, comments and suggested -improvements to the Software and its code are welcome by the authors of the -Software and CUTS, and in agreeing to provide these to the authors or to CUTS -the Licensee hereby assigns the Intellectual Property Rights in error fixes, -bug fixes, or technical improvements to CUTS which are communicated in any -manner or medium to the authors of the Software or CUTS with a reservation of -use of those improvements and suggestions by the Licensee subject to the terms -and conditions of the Licence in this Agreement. - -4. NO MAINTENANCE OR SUPPORT - -4.1 CUTS is under no obligation whatsoever to: - -(a) provide maintenance or support for the Software; or - -(b) notify the Licensee of error fixes, bug fixes, patches, or upgrades to -the features, functionality or performance of the Software ("Enhancements") -(if any), whether developed by CUTS or third parties. If, in its sole -discretion, CUTS makes an Enhancement available to the Licensee and CUTS does -not separately enter into a written licence agreement with the Licensee -relating to such bug fix, patch or upgrade, then it shall be deemed -incorporated into the Software and subject to this Agreement. - -5. DISCLAIMER OF WARRANTIES - -5.1 CUTS warrants that the Software will conform substantially with its -functional specifications. Otherwise the Software is supplied "as is" without -warranty of any kind. CUTS, its licensors and its employees: - -(a) disclaim any warranties, express or implied, including but not limited to -any implied warranties of merchantability, fitness for a particular purpose, -title or non-infringement of third party rights; - -(b) do not assume any legal liability or responsibility for the accuracy, -completeness, or usefulness of the Software; - -(c) do not represent that use of the Software will not infringe privately -owned rights; - -(d) do not warrant that the Software will function uninterrupted, that it is -error-free or that any errors will be corrected. - -6. LIMITATION OF LIABILITY - -6.1 In no event will CUTS or its licensors or its employees be liable to -the Licensee for any indirect, incidental, consequential, special or punitive -damages of any kind or nature, including but not limited to loss of profits or -loss of data, for any reason whatsoever, whether such liability is asserted on -the basis of contract, tort (including negligence or strict liability), or -otherwise, even if CUTS has been warned of the possibility of such loss or -damages. In no event shall CUTS' liability arising from or in connection with -this Agreement exceed a sum equivalent to the annual Fee paid by the Licensee -to the PHENIX Industry Consortium for use of the Software. - -6.2 The limitations and exclusions in this Agreement shall not apply in -respect of claims for personal injury or death caused by the negligence of -CUTS, its licensors or its employees or in respect of fraud or fraudulent -misrepresentation. - -7. INDEMNITY - -7.1 The Licensee shall indemnify CUTS, the Software authors, the Software -sponsors, and their agents, officers, and employees, against any and all -claims, suits, losses, damages, costs, fees, and expenses arising out of or in -connection with any claim or threatened claim by any third party relating to -or arising from the use of the Software by the Licensee. The Licensee shall -pay all costs incurred by CUTS in enforcing this provision. - -8. TERM AND TERMINATION - -8.1 This Agreement and the Licence granted herein shall come into effect -on the Commencement Date and will continue for the duration of payment of the -Fee unless terminated by CUTS in accordance with this Agreement. If the -Licensee breaches any term of this Agreement, and fails to cure such breach -within thirty (30) days of the date of written notice, this Agreement shall -immediately terminate. Upon such termination the Licensee shall immediately -cease using the Software, return to CUTS or destroy all copies of the -Software, and provide CUTS with written certification of the Licensee's -compliance with the foregoing. Termination shall not relieve the Licensee -from its obligations arising prior to such termination. Notwithstanding any -provision of this Agreement to the contrary, Sections 3, 5, 6, 7, 8, 9, 10, -13, 14 and 18 shall survive termination of this Agreement. - -9. CONFIDENTIALITY - -9.1 The Licensee agrees and undertakes that during the term of the Licence in -this Agreement and thereafter it will keep confidential all, and will not use -for its own purposes nor without the prior written consent of CUTS disclose to -any third party any information of a confidential nature (including trade -secrets and information of commercial value) which may become known to the -Licensee and which relates to CUTS unless such information is public knowledge -or already known to the Licensee at the time of disclosure or subsequently -becomes public knowledge other by breach of the Licence in this Agreement or -subsequently comes lawfully into the possession of the Licensee from a third -party. - -10. NO SUBLICENSING AND NO ASSIGNMENT - -10.1 The Licensee shall have no right to sub-license or to assign, -transfer, charge or deal in any other manner the benefit or burden of the -Licence in this Agreement in whole or in part or to allow the Software to -become the subject of any charge, lien or encumbrance without the prior -written consent of CUTS such consent may be withheld without giving any -reasons. - -11. WAIVER - -11.1 No forbearance or delay by either party in enforcing its rights will -prejudice or restrict the rights of that party, and no waiver of any such -rights or of any breach of any contractual terms will be deemed to be a waiver -of any other right or of any later breach. - -12. SEVERABILITY - -12.1 If any provision of the Licence in this Agreement is judged to be -illegal or unenforceable, the continuation in full force and effect of the -remainder of the provisions will not be prejudiced. - -13. NO AGENCY OR PARTNERSHIP - -13.1 Nothing contained or implied in this Agreement constitutes a Party the -partner, agent, or legal representative of another party or of the other Party -for any purpose or creates any partnership, agency or trust, and no Party has -any authority to bind the other Party in any way. - -14. THE CONTRACTS (RIGHTS OF THIRD PARTIES) ACT 1999 - -14.1 The Contracts (Rights of Third Parties) Act 1999 shall not apply to -this Agreement and nothing in this Agreement shall confer or purport to confer -on or operate to give any third Party any benefit or any right to enforce any -term of this Agreement except as expressly provided in this Agreement. - -15. NOTICES - -15.1 Any notice to be given under this Agreement shall be in writing and -delivered by hand, prepaid registered post or facsimile to a Party at the -address set out at the head of this Agreement or to such other address or fax -number as any Party may specify in writing to another. Notices are deemed to -have been given: - -(a) if delivered by hand, at the time of delivery unless delivered after 5pm -in the place of receipt or on a non-business day, in which case the notice is -deemed to have been given at 9am the next business day; - -(b) if sent by registered post from within the United Kingdom, three -business days after posting (or seven business days if posted from outside the -United Kingdom); and - -(c) if sent by facsimile, at the time the facsimile is received shown in -the transmission report as the time that the whole facsimile was sent unless -received after 5pm in the place of receipt or on a non-business day, in which -case the notice is deemed to have been given at 9am the next business day. -Any notice served by facsimile transmission shall be confirmed by post. - -16. ENTIRE AGREEMENT - -16.1 This Agreement constitutes the entire agreement and understanding of -the Parties and supersedes all negotiations, understandings or previous -agreement between the Parties relating to the subject matter of this -Agreement. - -17. GOVERNING LAW - -17.1 This Agreement and any documents to be entered into pursuant to it -shall be governed by and construed in accordance with English law and each -Party irrevocably submits to the exclusive jurisdiction of the courts of -England over any claim or matter arising under or in connection with this -Agreement and the documents entered into pursuant to it. - -18. EXPORT CONTROL REGULATIONS - -18.1 'Export Control Regulations' means any United Nations trade sanctions -or EU or UK legislation or regulation, from time to time in force, which -impose arms embargoes or control of export of goods, technology or software. - -18.2 The Licensee shall ensure that, in using the Software it shall not and -nor shall its employees or consultants or contractors breach or compromise -directly of indirectly compliance with any Export Control Regulations. - - - -If you have any questions or feedback concerning the Software, contact -University of Cambridge, Department of Haematology, Cambridge Institute for -Medical Research, Wellcome Trust/MRC Building, Cambridge CB2 0XY UK. -Attn: Professor Randy Read, or via email at cimr-phaser@lists.cam.ac.uk - diff --git a/licenses/phenix b/licenses/phenix deleted file mode 100644 index 0b6c5c08c..000000000 --- a/licenses/phenix +++ /dev/null @@ -1,174 +0,0 @@ -NON-COMMERCIAL END USER -SOURCE CODE & BINARY LICENSE AGREEMENT - -Software: PHENIX (LBNL Ref. CR-1770) -Version: 1 Alpha, Beta and General - -Software: LABELIT (LBNL Ref. CR-1960) -Version: 1.1.4 - -IMPORTANT - READ CAREFULLY: This License Agreement ("Agreement") is a -legal agreement between you (in your capacity as an individual and as -an agent for your company, institution or other entity) and The -Regents of the University of California, Department of Energy -contract-operators of the Ernest Orlando Lawrence Berkeley National -Laboratory ("Berkeley Lab"). Downloading, installing, using, or -copying of the Software (as defined below) by you or by a third party -on your behalf indicates your agreement to be bound by the terms and -conditions of this Agreement. If you do not agree to these terms and -conditions, do not download, install or use the Software. - -1. LICENSE GRANT. Berkeley Lab grants you, and you hereby accept, a -non-exclusive, royalty-free perpetual license to install, use, modify, -and prepare derivative works the version noted above of the computer -software program noted above, in binary and source code format, or any -derivative work thereof, together with any associated media, printed -materials, and on-line or electronic documentation (if any) provided -by Berkeley Lab (collectively, the "Software") FOR INTERNAL, -NON-COMMERCIAL, RESEARCH AND DEVELOPMENT PURPOSES ONLY, subject to the -following terms and conditions: (i) you may not distribute, rent, -lease, loan, or sublicense the Software to any third party, nor may -you distribute the Software as incorporated into any derivative work -you may create. This version of the Software constitutes a research -prototype and may be changed substantially. The license grant set -forth above is subject to receipt by Berkeley Lab of any required -U.S. Department of Energy approvals. - -2. COPYRIGHT; RETENTION OF RIGHTS. The above license grant is -conditioned on the following: (i) you must reproduce all copyright -notices and other proprietary notices on any copies of the Software -and you must not remove such notices; and (ii) in the event you -compile the Software, you will include the copyright notice with the -binary in such a manner as to allow it to be easily viewable. All -copies of the Software shall be subject to the terms of this -Agreement. Subject to approval by the U.S. Department of Energy: (a) -you hereby acknowledge that the Software is protected by United States -copyright law and international treaty provisions; (b) Berkeley Lab, -and its licensors (if any), hereby reserve all rights in the Software -which are not explicitly granted to you herein; (c) without limiting -the generality of the foregoing, Berkeley Lab and its licensors retain -all title, copyright, and other proprietary interests in the Software -and any copies thereof, and you do not acquire any rights, express or -implied, in the Software, other than those specifically set forth in -this Agreement. Subject to Berkeley Lab's underlying copyright in the -Software pursuant to the above, you retain all title, copyright, and -other proprietary interests in any derivative works of the Software -that you create and any copies thereof, and Berkeley Lab does not -acquire any rights, express or implied, in such derivative works. - -3. NO MAINTENANCE OR SUPPORT; TREATMENT OF ENHANCEMENTS YOU CHOOSE TO -PROVIDE TO BERKELEY LAB. Berkeley Lab is under no obligation -whatsoever to: (i) provide maintenance or support for the Software; or -(ii) notify you of bug fixes, patches, or upgrades to the features, -functionality or performance of the Software ("Enhancements") (if -any), whether developed by Berkeley Lab or third parties. If, in its -sole discretion, Berkeley Lab makes an Enhancement available to you -and Berkeley Lab does not separately enter into a written license -agreement with you relating to such bug fix, patch or upgrade, then it -shall be deemed incorporated into the Software and subject to this -Agreement. You are under no obligation whatsoever to provide any -Enhancements to Berkeley Lab that you may develop over time; however, -if you choose to provide your Enhancements to Berkeley Lab in source -code form without contemporaneously requiring Berkeley Lab to enter -into a separate written license agreement for such Enhancements, then -you hereby grant Berkeley Lab a non-exclusive, royalty-free perpetual -license to install, use, modify, prepare derivative works, incorporate -into the Software or other computer software, distribute, and -sublicense your Enhancements or derivative works thereof, in binary -and source code form. - -4. U.S. GOVERNMENT RIGHTS. The Software was developed under funding -from the U.S. Department of Energy and the U.S. Government -consequently retains certain rights as follows: the U.S. Government -has been granted for itself and others acting on its behalf a paid-up, -nonexclusive, irrevocable, worldwide license in the Software to -reproduce, prepare derivative works, and perform publicly and display -publicly. Beginning five (5) years after the date permission to -assert copyright was granted by the U.S. Dept. of Energy, and subject -to any subsequent five (5) year renewals, the U.S. Government is -granted for itself and others acting on its behalf a paid-up, -nonexclusive, irrevocable, worldwide license in the Software to -reproduce, prepare derivative works, distribute copies to the public, -perform publicly and display publicly, and to permit others to do so. - -5. CONFIDENTIALITY. You agree to take appropriate steps to ensure -that the source code form of the Software remains confidential and is -protected against unauthorized disclosure, use, or release, and will -treat it with at least the same level of care as you would use to -protect and secure your own confidential information, but in any event -using no less than a reasonable standard of care. - -6. WARRANTY DISCLAIMER. THE SOFTWARE IS SUPPLIED "AS IS" WITHOUT -WARRANTY OF ANY KIND. BERKELEY LAB, ITS LICENSORS, THE UNITED STATES, -THE UNITED STATES DEPARTMENT OF ENERGY, AND THEIR EMPLOYEES: (1) -DISCLAIM ANY WARRANTIES, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED -TO ANY IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR -PURPOSE, TITLE OR NON-INFRINGEMENT, (2) DO NOT ASSUME ANY LEGAL -LIABILITY OR RESPONSIBILITY FOR THE ACCURACY, COMPLETENESS, OR -USEFULNESS OF THE SOFTWARE, (3) DO NOT REPRESENT THAT USE OF THE -SOFTWARE WOULD NOT INFRINGE PRIVATELY OWNED RIGHTS, (4) DO NOT WARRANT -THAT THE SOFTWARE WILL FUNCTION UNINTERRUPTED, THAT IT IS ERROR-FREE -OR THAT ANY ERRORS WILL BE CORRECTED. - -7. LIMITATION OF LIABILITY. IN NO EVENT WILL BERKELEY LAB OR ITS -LICENSORS BE LIABLE FOR ANY INDIRECT, INCIDENTAL, CONSEQUENTIAL, -SPECIAL OR PUNITIVE DAMAGES OF ANY KIND OR NATURE, INCLUDING BUT NOT -LIMITED TO LOSS OF PROFITS OR LOSS OF DATA, FOR ANY REASON WHATSOEVER, -WHETHER SUCH LIABILITY IS ASSERTED ON THE BASIS OF CONTRACT, TORT -(INCLUDING NEGLIGENCE OR STRICT LIABILITY), OR OTHERWISE, EVEN IF -BERKELEY LAB HAS BEEN WARNED OF THE POSSIBILITY OF SUCH LOSS OR -DAMAGES. IN NO EVENT SHALL BERKELEY LAB'S LIABILITY FOR DAMAGES -ARISING FROM OR IN CONNECTION WITH THIS AGREEMENT EXCEED THE AMOUNT -PAID BY YOU FOR THE SOFTWARE. - -8. INDEMNITY. You shall indemnify, defend, and hold harmless -Berkeley Lab, the U.S. Government, the Software developers, the -Software sponsors, and their agents, officers, and employees, against -any and all claims, suits, losses, damage, costs, fees, and expenses -arising out of or in connection with this Agreement. You shall pay -all costs incurred by Berkeley Lab in enforcing this provision, -including reasonable attorney fees. - -9. TERM AND TERMINATION. The license granted to you under this -Agreement will continue perpetually unless terminated by Berkeley Lab -in accordance with this Agreement. If you breach any term of this -Agreement, and fail to cure such breach within thirty (30) days of the -date of written notice, this Agreement shall immediately -terminate. Upon such termination, you shall immediately cease using -the Software, return to Berkeley Lab, or destroy, all copies of the -Software, and provide Berkeley Lab with written certification of your -compliance with the foregoing. Termination shall not relieve you from -your obligations arising prior to such termination. Notwithstanding -any provision of this Agreement to the contrary, Sections 5 through 12 -shall survive termination of this Agreement. - -10. EXPORT CONTROLS. You shall observe all applicable United States -and foreign laws and regulations (if any) with respect to the export, -re-export, diversion or transfer of the Software, related technical -data and direct products thereof, including, without limitation, the -International Traffic in Arms Regulations (ITAR) and the Export -Administration Regulations. - -11. NO ENDORSEMENT. In accordance with California Education Code -Section 92000, you shall not use in advertising, publicity or other -promotional activities any name, trade name, trademark, or other -designation of the University of California, nor shall you so use -"Ernest Orlando Lawrence Berkeley National Laboratory" or "United -States Department of Energy" (including any contraction, abbreviation, -or simulation of any of the foregoing) without Berkeley Lab's prior -written consent. - -12. GENERAL. This Agreement shall be governed by the laws of the -State of California, excluding its rules governing conflicts of laws. -No provision in either party's purchase orders, or in any other -business forms employed by either party will supersede the terms of -this Agreement, and no modification or amendment of this Agreement is -binding, unless in writing signed by a duly authorized representative -of each party. This Agreement is binding upon and shall inure to the -benefit of Berkeley Lab, its successors and assigns. This Agreement -represents the entire understanding of the parties, and supersedes all -previous communications, written or oral, relating to the subject of -this Agreement. If you have any questions concerning this license, -contact Lawrence Berkeley National Laboratory, Technology Transfer -Department, One Cyclotron Road, MS 90R1070, Berkeley, CA 94720, Attn: -Software Licensing or via e-mail at TTD@lbl.gov. (rev 010903) diff --git a/licenses/pydap b/licenses/pydap deleted file mode 100644 index cdf41977a..000000000 --- a/licenses/pydap +++ /dev/null @@ -1,20 +0,0 @@ -Copyright (c) 2003?2009 Roberto De Almeida - -Permission is hereby granted, free of charge, to any person obtaining a copy of -this software and associated documentation files (the ?Software?), to deal in -the Software without restriction, including without limitation the rights to -use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies -of the Software, and to permit persons to whom the Software is furnished to do -so, subject to the following conditions: - -The above copyright notice and this permission notice shall be included in all -copies or substantial portions of the Software. - -THE SOFTWARE IS PROVIDED ?AS IS?, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE -SOFTWARE. - diff --git a/licenses/pyvcf b/licenses/pyvcf deleted file mode 100644 index f37927b3a..000000000 --- a/licenses/pyvcf +++ /dev/null @@ -1,46 +0,0 @@ -Copyright (c) 2011-2012, Population Genetics Technologies Ltd, All rights reserved. - -Redistribution and use in source and binary forms, with or without -modification, are permitted provided that the following conditions are met: - -1. Redistributions of source code must retain the above copyright notice, this -list of conditions and the following disclaimer. - -2. Redistributions in binary form must reproduce the above copyright notice, this -list of conditions and the following disclaimer in the documentation and/or -other materials provided with the distribution. - -3. Neither the name of the Population Genetics Technologies Ltd nor the names of -its contributors may be used to endorse or promote products derived from this -software without specific prior written permission. - -THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND -ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED -WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE -DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE -FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL -DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR -SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER -CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, -OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE -OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - -Copyright (c) 2011 John Dougherty - -Permission is hereby granted, free of charge, to any person obtaining a copy of -this software and associated documentation files (the "Software"), to deal in -the Software without restriction, including without limitation the rights to -use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of -the Software, and to permit persons to whom the Software is furnished to do so, -subject to the following conditions: - -The above copyright notice and this permission notice shall be included in all -copies or substantial portions of the Software. - -THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS -FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR -COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER -IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN -CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. diff --git a/licenses/rosetta-academic b/licenses/rosetta-academic deleted file mode 100644 index 48e58aa27..000000000 --- a/licenses/rosetta-academic +++ /dev/null @@ -1,52 +0,0 @@ -Rosetta++ -License: -Rosetta++ Software -Academic License Agreement - -The University of Washington (“UW”) and the developers of the Rosetta software (Developers) give permission for you (“You”) and your Institution (“Institution”) to use the Rosetta++ protein prediction software (“Software”). Software was developed through support from the National Institutes of Health, Human Frontier Science Program Grant, National Science Foundation, Office of Naval Research, Packard Foundation, the Damon Runyon Cancer Research Foundation, Jane Coffin Childs Foundation, Los Alamos National Lab, and in part by researchers of the Howard Hughes Medical Institute (HHMI) at UW. UW and the Developers allow researchers at your Institution to copy and modify Software, for internal, non-profit research purposes, on the following conditions: - -1. The Software remains at your Institution and is not published, distributed, or otherwise transferred or made available to other than Institution employees and students involved in research under your supervision. - -2. You agree to make protein sequences, models and structures generated by using Software available to other academic researchers for non-profit research purposes. If You wish to obtain Software for any commercial purposes, including fee-based service projects, You will need to execute a separate licensing agreement with the University of Washington and pay a fee. In that case please contact: license@u.washington.edu - -3. You retain in Software and any modifications to Software, the copyright, trademark, or other notices pertaining to Software as provided by UW. - -4. You provide the Developers with feedback on the use of the Software in your research, and that the Developers and UW are permitted to use any information You provide in making changes to the Software. All bug reports and technical questions shall be sent to the email address: general-support@rosettacommons.org - -5. You acknowledge that the Developers, HHMI, UW and its licensees may develop modifications to Software that may be substantially similar to your modifications of Software, and that the Developers, HHMI, UW and its licensees shall not be constrained in any way by You in HHMI’s, UW’s or its licensees’ use or management of such modifications. You acknowledge the right of the Developers, HHMI, and UW to prepare and publish modifications to Software that may be substantially similar or functionally equivalent to your modifications and improvements, and if You obtain patent protection for any modification or improvement to Software You agree not to allege or enjoin infringement of your patent by the Developers, HHMI, the UW or by any of UW’s licensees obtaining modifications or improvements to Software from the University of Washington or the Developers. - -6. We will acknowledge in our publications contributions we make to each other’s research involving or based on the Software. The current citations for Software are: - -Rosetta ab initio structure prediction -Bonneau R, Strauss CE, Rohl CA, Chivian D, Bradley P, Malmstrom L, Robertson T, Baker D. (2002) De novo prediction of three-dimensional structures for major protein families. J Mol Biol 322(1):65-78. - -Bonneau R, Tsai J, Ruczinski I, Chivian D, Rohl C, Strauss CE, Baker D. (2001) Rosetta in CASP4: progress in ab initio protein structure prediction. Proteins Suppl 5:119-26. - -Simons KT, Ruczinski I, Kooperberg C, Fox B, Bystroff C, Baker D. (1999) Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins. Proteins 34(1) 82-95. - -Simons KT, Kooperberg C, Huang E, Baker, D. (1997) Assembly of protein tertiary structures from fragments with similar local sequences using simulate anealing and Bayesian scoring functions. J Mol Biol 268:209-25. - -RosettaDock -Protein-Protein Docking with Simultaneous Optimization of Rigid Body Displacement and Side Chain Conformations, J.J. Gray, S.E. Moughan, C. Wang, O. Schueler-Furman, B. Kuhlman, C.A. Rohl and D. Baker, J. Mol. Biol., 331(1), 281-299, 2003. - -Protein-Protein Docking Predictions for the CAPRI Experiment, J.J. Gray, S.E. Moughan, T. Kortemme, O. Schueler-Furman, K.M.S. Misura, A.V. Morozov, and D. Baker, Proteins, 52(1), 118-122, 2003. - -RosettaDesign -Dantas, G., Kuhlman, B., Callender, D., Wong, M., D. Baker: A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins. J Mol Biol 332: (2) 449-60 Sep 12 2003. - -Kuhlman B, Dantas G, Ireton G, Varani G, Stoddard B, Baker D: Design of a novel globular protein fold with atomic level accuracy. Science, 302, 1364-1368, Nov 21 2003. - -RosettaNMR -Rohl CA and Baker D. (2002) De novo determination of protein backbone structure from residual dipolar couplings using Rosetta. J Am Chem Soc 124:2723-9. - -Bowers PM, Strauss CE, Baker D. (2000) De novo protein structure determination using sparse NMR data. J Biomol NMR 18(4):311-8. - -RosettaNucleicAcids -Havranek, J. J., Duarte, C. M., Baker, D. (2004). A simple physical model for the prediction and design of protein-DNA interactions J Mol Biol 344, 59-70. - -RosettaLigand -Meiler J, Baker D. (2006). ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility. Proteins 65(3):538-48. - -7. Any risk associated with using the Software at your institution is with You and your Institution. Software is experimental in nature and is made available as a research courtesy "AS IS," without obligation by UW to provide accompanying services or support. - -8. UW AND THE AUTHORS EXPRESSLY DISCLAIM ANY AND ALL WARRANTIES REGARDING THE SOFTWARE, WHETHER EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO WARRANTIES PERTAINING TO NON-INFRINGEMENT, MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. diff --git a/licenses/rosetta-commercial b/licenses/rosetta-commercial deleted file mode 100644 index 0f22be5f6..000000000 --- a/licenses/rosetta-commercial +++ /dev/null @@ -1,26 +0,0 @@ -ROSETTA++ EXPRESS LICENSE -Instructions for Licensing of ROSETTA++ for Commercial Use -Non-Exclusive Software Site License Agreement -Commercial users are required to obtain this license in order to use Rosetta++. Please fill out the -license agreement and return it to UW TechTransfer. -Procedure for filling out the license: - 1. Print out the attached license agreement form and Attachments A & B. - 2. Complete the license fee and contact information on Attachment B. - 3. Have the license agreement signed by an authorized representative of your institution. - 4. Fax the completed agreement to (206) 616-3322. You may also send a Purchase Order. - 5. UW TechTransfer will review the agreement, countersign it or contact you. When the - license is complete, you will receive a copy of the executed agreement with an invoice. - 6. Your invoice will include a license agreement number. - 7. Include the license and invoice numbers on your check. A confirmation by facsimile of - the wire transfer amount and date by the issuing bank will substitute for confirmation by - UW. You can mail your fee to: Contracts Manager, UW TechTransfer Digital Ventures. - University of Washington. 4311 11th Ave NE Suite 500, Seattle, WA 98105-4608. - 8. Software access information will be sent to the Technical Contact via email upon receipt - of payment. - 9. Please contact our office if you have any questions about this process - UW Tech Transfer Digital Ventures - University of Washington - Phone: (206) 616-3451 - Fax: (206) 616-3322 - Email: license@u.washington.edu - diff --git a/licenses/smartgit b/licenses/smartgit deleted file mode 100644 index c1ff2a6f1..000000000 --- a/licenses/smartgit +++ /dev/null @@ -1,120 +0,0 @@ -License Agreement for SmartGit - -Last date of change: 2014-08-15 - -1 Subject of the Contract: The license terms of syntevo GmbH (hereinafter called "licensor") are applied for the concession of the rights of use for the entire or partly use of the object code of the software SmartGit (hereinafter called "SOFTWARE") to contractors, juristic persons under public law or official fund assets in terms of §310 in conjunction with §14 BGB [Civil Code] (hereinafter called "licensee"). Herewith the inclusion of the licensee's own terms and conditions is contradicted, unless their validity has explicitly been agreed to. - -2 Scope of the Rights of Use - -2.1 The following terms are valid for the assignment and use of the SOFTWARE for an unlimited period of time including any documentation and the license file (a file that is custom-made for each individual granting of a license, the file being necessary for the operation of the SOFTWARE). - -2.2 They are not valid for additional services such as installation, integration, parameterization and customization of the SOFTWARE to the licensee's requirements. - -3 Rights of Use - -3.1 The SOFTWARE is partly copyrighted in favour of the licensor and partly in favour of other holders of rights. - -3.2 The SOFTWARE is handed over to the licensee for its intended use. The scope of the intended use as well as the kind and scope of the rights of use result from the assignment contract and said license terms. They especially depend on whether the licensee gets a - -SOFTWARE Non-Commercial License, -SOFTWARE Commercial License, -SOFTWARE Enterprise License. -3.2.1 If a SOFTWARE Non-Commercial License is agreed upon with the licensee, the licensor grants to licensee the non-exclusive, non-transferable right, which is terminable according to the terms of clause 5 and terminated according to the terms of clause 3.2.1.1, to have the SOFTWARE used - -on a arbitrary number of single-user computers or on a central server or via terminal server clients, -simultaneously by a arbitrary number of users, -solely for non-commercial purposes. A purpose is non-commercial only if it is in no manner primarily intended for or directed toward commercial advantage or private monetary compensation. -Examples of non-commercial purposes: -you are using the SOFTWARE to work on open-source projects, -you are a student and you are using the SOFTWARE for your academic projects, -you are using the SOFTWARE in your spare time to manage the website source of your local football club for free. -Examples of commercial purposes, i.e. when you will need a Commercial License: -you are using the SOFTWARE to work on open-source as well as on your company's projects, -you are a student and you are using the SOFTWARE for your work as a freelancer, -you are using the SOFTWARE in your spare time to manage the website source code of your local football club and you are getting paid for that. -3.2.1.1 The Non-Commercial License is only valid for the latest version of the SOFTWARE as it is published on licensor's website and for all versions which have been first published not earlier than 3 months prior to the latest published version ('License Transition Period'). The SOFTWARE may contain a feature which enforces the termination of the Non-Commercial License for older versions by making them stop working after the License Transition Period. - -3.2.2 If a SOFTWARE Commercial License or a SOFTWARE Enterprise License is agreed upon with the licensee, the licensor grants to licensee the non-exclusive, non-transferable right, which is terminable according to the terms of clause 5 or permanent, to have the SOFTWARE used - -on a central server or via terminal server clients or as an in situ installation on single-user computers -by the agreed-upon number of all users nameable on demand, that means to have the SOFTWARE saved, loaded, displayed and run permanently or temporarily. Every user known by name can be replaced by another user known by name only once in a month. From that time on, said first user must not use the SOFTWARE anymore and said second user may start to use the SOFTWARE. At no time must the number of the users known by name exceed the number of the acquired licenses (example: If the licensee has bought the SOFTWARE for five users whose names he can indicate on demand, only these five users may use the SOFTWARE. This is true independently of the number of the respective installations and of the fact if they are done on a central server or via terminal server clients or as a local installation on single-user computers). -3.3 The licensee undertakes to take care that the intended use of the SOFTWARE is assured by appropriate technical and organizational measures. - -3.4 The licensee is obliged to back up the data orderly and regularly (especially with respect to working copies and repositories). - -3.5 The licensee is entitled to produce one backup from the SOFTWARE. - -3.6 The licensee is not entitled to translate, process, arrange the SOFTWARE differently or adapt or alter it and to copy the achieved results. - -3.7 The licensee is not entitled to distribute the SOFTWARE. This comprises any form of sublicensing, especially selling, letting, leasing or lending. Passing on the license file, a text file showing name and address of the licensee as well as an electronic signature which allows the technical exploitation of the SOFTWARE is also considered to be a form of distribution. - -3.8 The licensee is not entitled to make the SOFTWARE publicly accessible in such a way that it is accessible to the public at any place and at any time. - -3.9 The licensee undertakes not to decompile the SOFTWARE. - -4 Demo - -4.1 If the SOFTWARE is handed over only for test purposes, the licensor grants the licensee the non-exclusive, non-transferable right, limited to the test period of thirty-one (31) days, to have a non-registered copy of the SOFTWARE (demo) used on a arbitrary number of single-user computers or on a central server or via terminal server clients by a arbitrary number of users simultaneously for test purposes only, that means not productively, which again means to have the SOFTWARE saved, loaded, displayed and run permanently or temporarily. - -4.2 The demo of the SOFTWARE includes a function that terminates the use of the SOFTWARE after the expiration of the test period. After the payment of the agreed-upon license fee and the agreement to said license terms within the agreed-upon scope, this function is deactivated and the licensee gets the agreed-upon rights of use according to these license terms. Bypassing this technical protective function results in an immediate loss of all conceded rights of use. In this case a termination according to clause 5 is no longer applicable. - -5 Check for Updates/Internal Error reporting - -5.1 The SOFTWARE contains features which will automatically connect to licensor's servers to - -check for a new program version -in case of an internal error, report a "crash footprint" -The sent data contains NO POTENTIALLY SENSITIVE INFORMATION. The user can opt-out from both SOFTWARE features. - -5.2 Only upon user confirmation the SOFTWARE will send a full "bug report" to licensor for investigation. The contents of a full "bug report" may contain POTENTIALLY SENSITIVE INFORMATION and should be reviewed before sending. - -6 Liability - -6.1 When the SOFTWARE is handed over cost-free or for test purposes, the licensor is only liable in case that malice or gross negligence are blamed on him. - -6.2 The licensee's rights on indemnification due to a certain lack are excluded, if, for example, he has known the lack at the conclusion of the contract, especially when there had been a test phase before that date. If the licensee has not known of a lack due to gross negligence, he can only claim rights with respect to that lack if the licensor had fraudulently concealed the lack or had taken over a guarantee for the quality of that object. - -6.3 In case of data loss the licensor is only liable for the effort that would have been necessary for the recovery of the data, provided that the data backup was properly executed by the licensee. - -6.4 For the rest, kind and scope of liability are fixed in the respective sales contracts. - -6.5 If a third party asserts rights against the licensee because of claimed infringement of the SOFTWARE, the licensee is entitled to the rights defined in the corresponding sales contract. However this only applies, if the licensee immediately notifies the licensor about the claims of the third party, does not accept any claimed infringement and either leaves any legal actions, including possible out-of-court arrangements, to the licensee or only consummates them in agreement with the licensee. - -7 Cancellation of the Rights of Use - -7.1 If the licensee culpably and seriously violates the agreed-upon rights of use or intellectual property rights of the entitled person, the licensor can cancel the rights to use the respective SOFTWARE. In this case the fee will not be refunded. - -7.2 In case of cancellation the licensee is obliged to destroy the original of the SOFTWARE affected by the cancellation including any documentation and all copies or to return them to the licensor. If demanded by the licensor, the licensee will deliver a statement certifying the destruction. - -7.3 The other legal provisions remain untouched. - -8 Applicable Law and Place of Jurisdiction - -8.1 The law of the Federal Republic of Germany is applicable for all legal relationships of the parties excluding the laws on the international sale of goods. - -8.2 If the licensee is a merchant, a juristic person under public law or a person having special property under public law, the exclusive place of jurisdiction for all disputes from this contract will be the licensor's place of business. The same is applicable for the case when the licensee does not have a domestic place of general jurisdiction in Germany or the licensor's residence or habitual abode are not known at the time of filing an action. The licensor's capacity to apply to the court of a different place of jurisdiction remains untouched. - -9 The following third parties have rights on parts of the SOFTWARE: - -Hg4J, copyright by TMate Software s.r.o. (http://hg4j.com/). The corresponding license agreement can be found in the file licenses/HG4J-LICENSE. -Java-Prettify, copyright by Chan Wai Shing (https://code.google.com/p/java-prettify/). -The corresponding license agreement (Apache License 2.0) can be found at https://code.google.com/p/java-prettify/. -JGit, copyright by various authors (http://repo.or.cz/w/jgit.git and http://jgit.org). -The corresponding license agreement can be found at http://repo.or.cz/w/jgit.git/blob/HEAD:/LICENSE or in the file licenses/JGIT-LICENSE within the installation directory of SmartGit. -JNA, copyright 2008 by Timothy Wall and Wayne Meissner (https://jna.dev.java.net) -The corresponding license agreement can be found at http://www.gnu.org/licenses/old-licenses/lgpl-2.1.html or in the file licenses/JNA-LICENSE within the installation directory of SmartGit. -JOpt-Simple, copyright by various authors (http://sourceforge.net/projects/jopt-simple/). The corresponding license agreement can be found in the file licenses/JOPT-SIMPLE-LICENSE (MIT license) within the installation directory of SmartGit. -JSon-Simple, copyright by various authors (https://code.google.com/p/json-simple/). The corresponding license agreement (Apache License 2.0) can be found at https://code.google.com/p/json-simple/. -JMySpell, copyright 2007 by DreamTangerine (dreamtangerine@hotmail.com) -The corresponding license agreement can be found at http://javahispano.net/projects/jmyspell/ or in the file licenses/JMYSPELL-LICENSE within the installation directory of SmartGit. -Log4j, copyright by Apache Software Foundation -The corresponding license agreement can be found at http://www.apache.org/licenses/LICENSE-2.0 or in the file licenses/LOG4J-LICENSE within the installation directory of SmartGit. -Parboiled, copyright by Mathias Doenitz -The corresponding license agreement can be found at https://github.com/sirthias/parboiled/blob/master/LICENSE or in the file licenses/PARBOILED-LICENSE within the installation directory of SmartGit. -Pegdown, copyright by Mathias Doenitz -The corresponding license agreement can be found at https://github.com/sirthias/pegdown/blob/master/LICENSE or in the file licenses/PEGDOWN-LICENSE within the installation directory of SmartGit. -SWT, copyright by Eclipse (http://eclipse.org). The corresponding license agreement can be found at http://www.eclipse.org/legal/epl-v10.html. -SVNKit, copyright by TMate Software s.r.o. (http://svnkit.com/) The corresponding license agreement can be found in the file licenses/SVNKIT-LICENSE within the installation directory of SmartGit. -Trilead SSH API, Copyright (c) 2007 Trilead AG (http://www.trilead.com). All rights reserved. -The corresponding license agreement can be found at http://www.trilead.com/Products/Trilead_SSH_for_Java/license/ or in the file licenses/TRILEAD-LICENSE within the installation directory of SmartGit. -The licensee is obliged to abide by these third parties license terms. Consequently they are part of this license agreement.
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