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# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/cctbx-2010.03.29.2334-r2.ebuild,v 1.2 2010/09/12 12:26:04 jlec Exp $
EAPI="3"
PYTHON_DEPEND="2"
inherit eutils python toolchain-funcs
MY_PV="${PV//./_}"
DESCRIPTION="Computational Crystallography Toolbox"
HOMEPAGE="http://cctbx.sourceforge.net/"
SRC_URI="http://cci.lbl.gov/cctbx_build/results/${MY_PV}/${PN}_bundle.tar.gz -> ${P}.tar.gz"
LICENSE="cctbx-2.0"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="+minimal openmp threads"
RDEPEND="
>dev-libs/boost-1.39
sci-libs/fftw
!minimal? (
sci-chemistry/cns
sci-chemistry/shelx )"
DEPEND="${RDEPEND}
>=dev-util/scons-1.2"
S="${WORKDIR}"
MY_S="${WORKDIR}"/cctbx_sources
MY_B="${WORKDIR}"/cctbx_build
pkg_setup() {
if use openmp && ! tc-has-openmp; then
ewarn "You are using gcc and OpenMP is only available with gcc >= 4.2 and icc"
ewarn "If you want to build ${PN} with OpenMP, abort now,"
ewarn "and switch CC to an OpenMP capable compiler"
fi
python_set_active_version 2
}
src_prepare() {
local opts
local optsld
epatch "${FILESDIR}"/${PV}-tst_server.py.patch
epatch "${FILESDIR}"/${PV}-boost.patch
epatch "${FILESDIR}"/${PV}-clipper.patch
epatch "${FILESDIR}"/${PV}-flags.patch
epatch "${FILESDIR}"/${PV}-soname.patch
rm -rf "${MY_S}/scons" "${MY_S}/boost" "${MY_S}/PyCifRW"
find "${MY_S}/clipper" -name "*.h" -delete
echo "import os, sys; os.execvp('scons', sys.argv)" > "${MY_S}"/libtbx/command_line/scons.py
}
src_configure() {
local compiler
local myconf
myconf="${MY_S}/libtbx/configure.py"
compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)')
myconf="${myconf} --compiler=${compiler}"
# Additional USE flag usage
check_use openmp
myconf="${myconf} --enable-openmp-if-possible=${USE_openmp}"
use threads && USEthreads="--enable-boost-threads" && \
ewarn "If using boost threads openmp support is disabled"
myconf="${myconf} ${USE_threads} --scan-boost --use_environment_flags"
mkdir "${MY_B}" && myconf="${myconf} --current_working_directory=${MY_B}"
cd "${MY_B}"
myconf="${myconf} --build=release fftw3tbx rstbx smtbx mmtbx clipper_adaptbx fable"
einfo "configuring with ${python} ${myconf}"
$(PYTHON) ${myconf} || die "configure failed"
}
src_compile() {
local makeopts_exp
cd "${MY_B}"
makeopts_exp=${MAKEOPTS/j/j }
makeopts_exp=${makeopts_exp%-l[0-9]*}
source setpaths_all.sh
einfo "compiling with libtbx.scons ${makeopts_exp}"
libtbx.scons ${makeopts_exp} .|| die "make failed"
}
src_test(){
source "${MY_B}"/setpaths_all.sh
libtbx.python $(libtbx.show_dist_paths boost_adaptbx)/tests/tst_rational.py && \
libtbx.python ${SCITBX_DIST}/run_tests.py ${MAKEOPTS_EXP} && \
libtbx.python ${CCTBX_DIST}/run_tests.py ${MAKEOPTS_EXP} \
|| die "test failed"
}
src_install(){
# find cctbx_build/ -type f \( -name "*.py" -o -name "*sh" \) -exec \
# sed -e "s:${MY_S}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_sources:g" \
# -e "s:${MY_B}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_build:g" \
# -i '{}' \; || die "Fail to correct path"
ebegin "removing unnessary files"
rm -r "${S}"/cctbx_sources/{clipper,ccp4io,ucs-fonts,TAG} || die "failed to remove uneeded scons"
find "${S}" -type f -name "*conftest*" -delete || die "failed to remove uneeded *.o"
find "${S}" -type f -name "*.o" -delete || die "failed to remove uneeded *.o"
find "${S}" -type f -name "*.c" -delete || die "failed to remove uneeded *.c"
find "${S}" -type f -name "*.f" -delete || die "failed to remove uneeded *.c"
find "${S}" -type f -name "*.cpp" -delete || die "failed to remove uneeded *.cpp"
find "${S}" -type f -name "*.pyc" -delete || die "failed to remove uneeded *.pyc"
find "${S}" -type f -name "SCons*" -delete || die "failed to remove uneeded *.pyc"
find "${S}" -type f -name "Makefile" -delete || die "failed to remove uneeded *.pyc"
find "${S}" -type f -name "config.log" -delete || die "failed to remove uneeded *.pyc"
find "${S}" -type d -empty -delete || die
find ${MY_B} -maxdepth 1 -type f
find ${MY_B} -maxdepth 1 -type f -delete
eend
dobin ${MY_B}/bin/* || die
rm -rf ${MY_B}/bin
dolib.so ${MY_B}/lib/lib* || die
rm -f ${MY_B}/lib/lib*
insinto /usr/include
doins -r ${MY_B}/include/* || die
rm -rf ${MY_B}/include
insinto /usr/libexec/${PN}
doins -r ${MY_B}/* || die
find "${ED}"/usr/libexec/${PN} -type f -exec chmod 755 '{}' \;
cd ${MY_S}
insinto $(python_get_sitedir)
doins -r * || die
exeinto $(python_get_sitedir)
doexe ${MY_B}/lib/* || die
rm -rvf ${MY_B}/lib
sed \
-e "/PYTHONPATH/s:${MY_S}:$(python_get_sitedir):g" \
-e "/PYTHONPATH/s:${MY_B}:$(python_get_sitedir):g" \
-e "/LD_LIBRARY_PATH/s:${MY_B}/lib:${EPREFIX}/usr/$(get_libdir):g" \
-e "/PATH/s:${MY_B}/bin:${EPREFIX}/usr/bin:g" \
-e "/PATH/s:${MY_B}/exe:${EPREFIX}/usr/bin:g" \
-e "/exec/s:${MY_S}:$(python_get_sitedir):g" \
-e "/LIBTBX_BUILD/s:${MY_B}:/usr:g" \
-i "${ED}"/usr/bin/* || die
}
pkg_postinst () {
python_need_rebuild
python_mod_optimize boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx
}
pkg_postrm () {
python_mod_cleanup boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx
}
check_use() {
for var in $@; do
if use ${var}; then
printf -v "USE_$var" True
else
printf -v "USE_$var" False
fi
shift
done
}
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