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# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/arb/arb-5.1-r1.ebuild,v 1.5 2012/03/04 09:55:06 jlec Exp $
EAPI=2
inherit eutils toolchain-funcs
DESCRIPTION="Tools for DNA/RNA sequence database handling and data analysis, phylogenetic analysis"
HOMEPAGE="http://www.arb-home.de/"
SRC_URI="
http://download.arb-home.de/release/arb_${PV}/arbsrc.tgz -> ${P}.tgz
mirror://gentoo/${P}-glibc2.10.patch.bz2
http://dev.gentoo.org/~jlec/${P}-linker.patch.bz2"
LICENSE="arb"
SLOT="0"
IUSE="+opengl"
KEYWORDS="~amd64 ~x86"
DEPEND="
app-text/sablotron
media-libs/libpng
media-libs/tiff
www-client/lynx
x11-libs/libXaw
x11-libs/libXpm
x11-libs/openmotif:0
opengl? (
media-libs/glew
media-libs/freeglut
|| (
media-libs/mesa[motif]
( media-libs/mesa x11-libs/libGLw ) ) )"
RDEPEND="${DEPEND}
sci-visualization/gnuplot"
# Recommended: libmotif3 gv xfig xterm treetool java
src_unpack() {
unpack ${A}
mv arbsrc* ${P}
}
src_prepare() {
epatch \
"${WORKDIR}"/${P}-glibc2.10.patch\
"${WORKDIR}"/${P}-linker.patch \
"${FILESDIR}"/${PV}-libs.patch \
"${FILESDIR}"/${PV}-bfr-overflow.patch
sed -i \
-e 's/all: checks/all:/' \
-e "s/GCC:=.*/GCC=$(tc-getCC) ${CFLAGS}/" \
-e "s/GPP:=.*/GPP=$(tc-getCXX) ${CXXFLAGS}/" \
-e 's/--export-dynamic/-Wl,--export-dynamic/g' \
"${S}/Makefile" || die
cp config.makefile.template config.makefile
sed -i -e '/^[ \t]*read/ d' -e 's/SHELL_ANS=0/SHELL_ANS=1/' "${S}/arb_install.sh" || die
use amd64 && sed -i -e 's/ARB_64 := 0/ARB_64 := 1/' config.makefile
use opengl || sed -i -e 's/OPENGL := 1/OPENGL := 0/' config.makefile
emake ARBHOME="${S}" links || die
}
src_compile() {
emake ARBHOME="${S}" PATH="${PATH}:${S}/bin" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${S}/lib" tarfile || die
use amd64 && mv arb.tgz arb.64.gentoo.tgz
use x86 && mv arb.tgz arb.32.gentoo.tgz
ln -s arb.*.tgz arb.tgz || die
}
src_install() {
ARBHOME="${D}/opt/arb" "${S}/arb_install.sh" || die
cat <<- EOF > "${S}/99${PN}"
ARBHOME=/opt/arb
PATH=/opt/arb/bin
LD_LIBRARY_PATH=/opt/arb/lib
EOF
doenvd "${S}/99${PN}" || die
}
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