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# Copyright 1999-2003 Gentoo Technologies, Inc.
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/app-sci/bioperl/bioperl-1.0.2.ebuild,v 1.6 2003/09/06 22:23:05 msterret Exp $
inherit perl-module
CATEGORY="app-sci"
DESCRIPTION="collection of tools for bioinformatics, genomics and life science research"
HOMEPAGE="http://www.bioperl.org/"
SRC_URI="http://bioperl.org/DIST/${P}.tar.gz"
LICENSE="Artistic | GPL-2"
SLOT="0"
KEYWORDS="x86 ~ppc ~sparc ~alpha"
IUSE="mysql gd"
DEPEND="dev-perl/File-Temp
dev-perl/HTML-Parser
dev-perl/IO-String
dev-perl/IO-stringy
dev-perl/SOAP-Lite
dev-perl/Storable
dev-perl/XML-DOM
dev-perl/XML-Parser
dev-perl/XML-Writer
dev-perl/XML-Twig
dev-perl/libxml-perl
dev-perl/libwww-perl
dev-perl/Text-Shellwords
gd? ( >=dev-perl/GD-1.32-r1 )
mysql? ( >=dev-perl/DBD-mysql-2.1004-r3 )"
src_compile() {
# there's a test to run for BioGFFDB if using mysql
# note: these echo's are for the default values for testing. Not that we're
# testing.
use mysql && (
echo y
echo test
echo localhost
echo undef
echo undef
) | perl-module_src_compile || perl-module_src_compile || die "compile failed"
# Sadly, it's not advisable to run make test for this installation, as the
# tests are used by the bioperl developers as a sort of todo list. :) IOW,
# it's OK if some fail.
#perl-module_src_test || die "test failed"
}
src_install() {
mydoc="AUTHORS BUGS FAQ"
perl-module_src_install
}
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