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* sci-biology/vaal: Version BUmpJustin Lecher2013-02-201-17/+18
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/vaal: Version BUmpJustin Lecher2013-02-203-7/+55
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpathslg: Drop oldJustin Lecher2013-02-201-17/+5
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpathslg: Drop oldJustin Lecher2013-02-202-37/+4
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Stable for amd64, wrt bug #458106Agostino Sarubbo2013-02-201-6/+16
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key 7194459F)
* Stable for amd64, wrt bug #458106Agostino Sarubbo2013-02-202-5/+7
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key 7194459F)
* sci-biology/ncbi-tools: Drop old; rename fmerge.1 to fmerg-ncbi.1 -> ↵Justin Lecher2013-02-181-22/+9
| | | | | | resolves collision with dev-util/fhist, #429560 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/ncbi-tools: Drop old; rename fmerge.1 to fmerg-ncbi.1 -> ↵Justin Lecher2013-02-187-416/+26
| | | | | | resolves collision with dev-util/fhist, #429560 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpathslg: Drop oldJustin Lecher2013-02-181-17/+5
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpathslg: Drop oldJustin Lecher2013-02-183-42/+11
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/raxml: Drop old; stop building when non sse3 capable CPU is ↵Justin Lecher2013-02-181-16/+11
| | | | | | detected, #375061 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/raxml: Drop old; stop building when non sse3 capable CPU is ↵Justin Lecher2013-02-186-139/+21
| | | | | | detected, #375061 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/beast-mcmc: Version Bump, fixes missing package, #374277Justin Lecher2013-02-181-5/+17
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/beast-mcmc: Version Bump, fixes missing package, #374277Justin Lecher2013-02-183-7/+99
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/unafold: Fix test, #358053; respect CFLAGSJustin Lecher2013-02-181-4/+15
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/unafold: Fix test, #358053; respect CFLAGSJustin Lecher2013-02-184-10/+49
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/rmblast: Bug fixes: Build against any boost, #356315; build with ↵Justin Lecher2013-02-181-10/+8
| | | | | | gcc-4.7, #442266 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/rmblast: Bug fixes: Build against any boost, #356315; build with ↵Justin Lecher2013-02-185-17/+932
| | | | | | gcc-4.7, #442266 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/phyml: Drop OldJustin Lecher2013-02-181-17/+6
| | | | (Portage version: 2.2.0_alpha162/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/phyml: Drop OldJustin Lecher2013-02-183-34/+7
| | | | (Portage version: 2.2.0_alpha162/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/sibsim4: Drop OldJustin Lecher2013-02-181-17/+5
| | | | (Portage version: 2.2.0_alpha162/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/sibsim4: Drop OldJustin Lecher2013-02-182-28/+4
| | | | (Portage version: 2.2.0_alpha162/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Stable for x86, wrt bug #328425Agostino Sarubbo2013-02-171-15/+15
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key 7194459F)
* Stable for x86, wrt bug #328425Agostino Sarubbo2013-02-172-3/+6
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key 7194459F)
* Stable for amd64, wrt bug #328431Agostino Sarubbo2013-02-171-5/+15
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key 7194459F)
* Stable for amd64, wrt bug #328431Agostino Sarubbo2013-02-172-4/+6
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key 7194459F)
* Stable for amd64, wrt bug #328425Agostino Sarubbo2013-02-171-2/+22
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key 7194459F)
* Stable for amd64, wrt bug #328425Agostino Sarubbo2013-02-172-5/+8
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key 7194459F)
* sci-biology/phylip: Respect LDFLAGS, #337921Justin Lecher2013-02-171-14/+13
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/phylip: Respect LDFLAGS, #337921Justin Lecher2013-02-174-54/+65
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/shrimp: Force sse2 support by the cpu, #337401Justin Lecher2013-02-171-5/+5
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/shrimp: Force sse2 support by the cpu, #337401Justin Lecher2013-02-172-3/+10
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/sibsim4: Respect CC, CFLAGS and LDFLAGS, #328431Justin Lecher2013-02-171-11/+11
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/sibsim4: Respect CC, CFLAGS and LDFLAGS, #328431Justin Lecher2013-02-173-11/+23
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/bfast: Build in source for testsJustin Lecher2013-02-171-5/+5
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/bfast: Build in source for testsJustin Lecher2013-02-172-3/+8
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/phrap: Add missing deps, thanks Martin Mokrejš for the patchJustin Lecher2013-02-171-4/+14
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/phrap: Add missing deps, thanks Martin Mokrejš for the patchJustin Lecher2013-02-173-10/+19
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/consed: Quote EPREFIX, thanks Martin Mokrejš for the patchJustin Lecher2013-02-171-17/+7
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/consed: Quote EPREFIX, thanks Martin Mokrejš for the patchJustin Lecher2013-02-173-11/+15
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/bfast: Drop old; move to autotools-utils; install docs in right ↵Justin Lecher2013-02-171-12/+9
| | | | | | place, #304603 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/bfast: Drop old; move to autotools-utils; install docs in right ↵Justin Lecher2013-02-175-78/+23
| | | | | | place, #304603 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mcl: Version BUmp; move to autotools-utils; install docs in ↵Justin Lecher2013-02-171-7/+9
| | | | | | right place, #296893 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mcl: Version BUmp; move to autotools-utils; install docs in ↵Justin Lecher2013-02-174-13/+71
| | | | | | right place, #296893 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/shrimp: Drop old; block collision with emboss, #450426; move to ↵Justin Lecher2013-02-171-20/+8
| | | | | | new python eclasses (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/shrimp: Drop old; block collision with emboss, #450426; move to ↵Justin Lecher2013-02-175-76/+38
| | | | | | new python eclasses (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/primer3: Version BumpJustin Lecher2013-02-141-5/+7
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/primer3: Version BumpJustin Lecher2013-02-142-2/+53
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/vienna-rna: Version Bump; move to EAPI=5, new python eclasses; ↵Justin Lecher2013-02-131-5/+11
| | | | | | autotools-utils (Portage version: 2.2.0_alpha162/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/vienna-rna: Version Bump; move to EAPI=5, new python eclasses; ↵Justin Lecher2013-02-136-1/+203
| | | | | | autotools-utils (Portage version: 2.2.0_alpha162/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)