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author | Justin Lecher <jlec@gentoo.org> | 2013-02-17 10:20:34 +0000 |
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committer | Justin Lecher <jlec@gentoo.org> | 2013-02-17 10:20:34 +0000 |
commit | 0b011ba182c80e28b372aa9c03163205cf38bb6e (patch) | |
tree | f61348df81aeb099cfe87e4e4e7554a018c6d001 /sci-biology | |
parent | sci-biology/mcl: Version BUmp; move to autotools-utils; install docs in right... (diff) | |
download | gentoo-2-0b011ba182c80e28b372aa9c03163205cf38bb6e.tar.gz gentoo-2-0b011ba182c80e28b372aa9c03163205cf38bb6e.tar.bz2 gentoo-2-0b011ba182c80e28b372aa9c03163205cf38bb6e.zip |
sci-biology/bfast: Drop old; move to autotools-utils; install docs in right place, #304603
(Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/bfast/ChangeLog | 8 | ||||
-rw-r--r-- | sci-biology/bfast/bfast-0.6.5a-r1.ebuild | 31 | ||||
-rw-r--r-- | sci-biology/bfast/bfast-0.6.5a.ebuild | 35 | ||||
-rw-r--r-- | sci-biology/bfast/bfast-0.7.0a.ebuild | 17 | ||||
-rw-r--r-- | sci-biology/bfast/metadata.xml | 10 |
5 files changed, 23 insertions, 78 deletions
diff --git a/sci-biology/bfast/ChangeLog b/sci-biology/bfast/ChangeLog index 51b096e0ddd9..2070e2e51f9f 100644 --- a/sci-biology/bfast/ChangeLog +++ b/sci-biology/bfast/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/bfast -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.7 2011/11/28 02:15:41 weaver Exp $ +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.8 2013/02/17 10:20:34 jlec Exp $ + + 17 Feb 2013; Justin Lecher <jlec@gentoo.org> -bfast-0.6.5a.ebuild, + -bfast-0.6.5a-r1.ebuild, bfast-0.7.0a.ebuild, metadata.xml: + Drop old; move to autotools-utils; install docs in right place, #304603 *bfast-0.7.0a (28 Nov 2011) diff --git a/sci-biology/bfast/bfast-0.6.5a-r1.ebuild b/sci-biology/bfast/bfast-0.6.5a-r1.ebuild deleted file mode 100644 index a8abd53d3aa2..000000000000 --- a/sci-biology/bfast/bfast-0.6.5a-r1.ebuild +++ /dev/null @@ -1,31 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.5a-r1.ebuild,v 1.1 2011/10/06 12:59:24 jlec Exp $ - -EAPI=4 - -inherit autotools - -DESCRIPTION="Blat-like Fast Accurate Search Tool" -HOMEPAGE="https://sourceforge.net/projects/bfast/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86" - -DEPEND="" -RDEPEND="dev-perl/XML-Simple" - -src_prepare() { - sed \ - -e 's/-m64//' \ - -e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \ - -e 's:-g -O2::g' \ - -i configure.ac || die - sed \ - -e 's:. test.definitions.sh:. ./test.definitions.sh:g' \ - -i tests/*sh || die - eautoreconf -} diff --git a/sci-biology/bfast/bfast-0.6.5a.ebuild b/sci-biology/bfast/bfast-0.6.5a.ebuild deleted file mode 100644 index c086febcb233..000000000000 --- a/sci-biology/bfast/bfast-0.6.5a.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.5a.ebuild,v 1.1 2011/05/18 16:11:49 weaver Exp $ - -EAPI="2" - -inherit autotools - -DESCRIPTION="Blat-like Fast Accurate Search Tool" -HOMEPAGE="https://sourceforge.net/projects/bfast/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86" - -DEPEND="" -RDEPEND="dev-perl/XML-Simple" - -src_prepare() { - sed -i -e 's/-m64//' \ - -e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \ - configure.ac || die - eautoreconf -} - -src_install() { - einstall || die - dodoc AUTHORS NEWS README -} - -src_test() { - emake check || die -} diff --git a/sci-biology/bfast/bfast-0.7.0a.ebuild b/sci-biology/bfast/bfast-0.7.0a.ebuild index 861e8a93a0f4..a4313b9a212c 100644 --- a/sci-biology/bfast/bfast-0.7.0a.ebuild +++ b/sci-biology/bfast/bfast-0.7.0a.ebuild @@ -1,10 +1,12 @@ -# Copyright 1999-2011 Gentoo Foundation +# Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.7.0a.ebuild,v 1.1 2011/11/28 02:15:41 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.7.0a.ebuild,v 1.2 2013/02/17 10:20:34 jlec Exp $ -EAPI=4 +EAPI=5 -inherit autotools +AUTOTOOLS_AUTORECONF=true + +inherit autotools-utils DESCRIPTION="Blat-like Fast Accurate Search Tool" HOMEPAGE="https://sourceforge.net/projects/bfast/" @@ -27,5 +29,10 @@ src_prepare() { sed \ -e 's:. test.definitions.sh:. ./test.definitions.sh:g' \ -i tests/*sh || die - eautoreconf + + sed \ + -e '/docdir/d' \ + -i Makefile.am || die + + autotools-utils_src_prepare } diff --git a/sci-biology/bfast/metadata.xml b/sci-biology/bfast/metadata.xml index 3302123e5718..fc7c76942a10 100644 --- a/sci-biology/bfast/metadata.xml +++ b/sci-biology/bfast/metadata.xml @@ -1,9 +1,9 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer> - <email>weaver@gentoo.org</email> - <name>Andrey Kislyuk</name> - </maintainer> - <herd>sci-biology</herd> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> </pkgmetadata> |