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authorJustin Lecher <jlec@gentoo.org>2013-02-17 10:20:34 +0000
committerJustin Lecher <jlec@gentoo.org>2013-02-17 10:20:34 +0000
commit0b011ba182c80e28b372aa9c03163205cf38bb6e (patch)
treef61348df81aeb099cfe87e4e4e7554a018c6d001 /sci-biology
parentsci-biology/mcl: Version BUmp; move to autotools-utils; install docs in right... (diff)
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sci-biology/bfast: Drop old; move to autotools-utils; install docs in right place, #304603
(Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/bfast/ChangeLog8
-rw-r--r--sci-biology/bfast/bfast-0.6.5a-r1.ebuild31
-rw-r--r--sci-biology/bfast/bfast-0.6.5a.ebuild35
-rw-r--r--sci-biology/bfast/bfast-0.7.0a.ebuild17
-rw-r--r--sci-biology/bfast/metadata.xml10
5 files changed, 23 insertions, 78 deletions
diff --git a/sci-biology/bfast/ChangeLog b/sci-biology/bfast/ChangeLog
index 51b096e0ddd9..2070e2e51f9f 100644
--- a/sci-biology/bfast/ChangeLog
+++ b/sci-biology/bfast/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/bfast
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.7 2011/11/28 02:15:41 weaver Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.8 2013/02/17 10:20:34 jlec Exp $
+
+ 17 Feb 2013; Justin Lecher <jlec@gentoo.org> -bfast-0.6.5a.ebuild,
+ -bfast-0.6.5a-r1.ebuild, bfast-0.7.0a.ebuild, metadata.xml:
+ Drop old; move to autotools-utils; install docs in right place, #304603
*bfast-0.7.0a (28 Nov 2011)
diff --git a/sci-biology/bfast/bfast-0.6.5a-r1.ebuild b/sci-biology/bfast/bfast-0.6.5a-r1.ebuild
deleted file mode 100644
index a8abd53d3aa2..000000000000
--- a/sci-biology/bfast/bfast-0.6.5a-r1.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.5a-r1.ebuild,v 1.1 2011/10/06 12:59:24 jlec Exp $
-
-EAPI=4
-
-inherit autotools
-
-DESCRIPTION="Blat-like Fast Accurate Search Tool"
-HOMEPAGE="https://sourceforge.net/projects/bfast/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=""
-RDEPEND="dev-perl/XML-Simple"
-
-src_prepare() {
- sed \
- -e 's/-m64//' \
- -e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \
- -e 's:-g -O2::g' \
- -i configure.ac || die
- sed \
- -e 's:. test.definitions.sh:. ./test.definitions.sh:g' \
- -i tests/*sh || die
- eautoreconf
-}
diff --git a/sci-biology/bfast/bfast-0.6.5a.ebuild b/sci-biology/bfast/bfast-0.6.5a.ebuild
deleted file mode 100644
index c086febcb233..000000000000
--- a/sci-biology/bfast/bfast-0.6.5a.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.5a.ebuild,v 1.1 2011/05/18 16:11:49 weaver Exp $
-
-EAPI="2"
-
-inherit autotools
-
-DESCRIPTION="Blat-like Fast Accurate Search Tool"
-HOMEPAGE="https://sourceforge.net/projects/bfast/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=""
-RDEPEND="dev-perl/XML-Simple"
-
-src_prepare() {
- sed -i -e 's/-m64//' \
- -e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \
- configure.ac || die
- eautoreconf
-}
-
-src_install() {
- einstall || die
- dodoc AUTHORS NEWS README
-}
-
-src_test() {
- emake check || die
-}
diff --git a/sci-biology/bfast/bfast-0.7.0a.ebuild b/sci-biology/bfast/bfast-0.7.0a.ebuild
index 861e8a93a0f4..a4313b9a212c 100644
--- a/sci-biology/bfast/bfast-0.7.0a.ebuild
+++ b/sci-biology/bfast/bfast-0.7.0a.ebuild
@@ -1,10 +1,12 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.7.0a.ebuild,v 1.1 2011/11/28 02:15:41 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.7.0a.ebuild,v 1.2 2013/02/17 10:20:34 jlec Exp $
-EAPI=4
+EAPI=5
-inherit autotools
+AUTOTOOLS_AUTORECONF=true
+
+inherit autotools-utils
DESCRIPTION="Blat-like Fast Accurate Search Tool"
HOMEPAGE="https://sourceforge.net/projects/bfast/"
@@ -27,5 +29,10 @@ src_prepare() {
sed \
-e 's:. test.definitions.sh:. ./test.definitions.sh:g' \
-i tests/*sh || die
- eautoreconf
+
+ sed \
+ -e '/docdir/d' \
+ -i Makefile.am || die
+
+ autotools-utils_src_prepare
}
diff --git a/sci-biology/bfast/metadata.xml b/sci-biology/bfast/metadata.xml
index 3302123e5718..fc7c76942a10 100644
--- a/sci-biology/bfast/metadata.xml
+++ b/sci-biology/bfast/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer>
- <email>weaver@gentoo.org</email>
- <name>Andrey Kislyuk</name>
- </maintainer>
- <herd>sci-biology</herd>
+ <maintainer>
+ <email>weaver@gentoo.org</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
</pkgmetadata>