diff options
Diffstat (limited to 'sci-chemistry/vmd/vmd-1.8.7-r2.ebuild')
| -rw-r--r-- | sci-chemistry/vmd/vmd-1.8.7-r2.ebuild | 179 |
1 files changed, 179 insertions, 0 deletions
diff --git a/sci-chemistry/vmd/vmd-1.8.7-r2.ebuild b/sci-chemistry/vmd/vmd-1.8.7-r2.ebuild new file mode 100644 index 000000000000..bfe487b72169 --- /dev/null +++ b/sci-chemistry/vmd/vmd-1.8.7-r2.ebuild @@ -0,0 +1,179 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.8.7-r2.ebuild,v 1.1 2010/07/27 18:47:38 jlec Exp $ + +EAPI="3" + +PYTHON_DEPEND="2" + +inherit eutils multilib python toolchain-funcs + +DESCRIPTION="Visual Molecular Dynamics" +HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/" +SRC_URI="${P}.src.tar.gz" + +SLOT="0" +LICENSE="vmd" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" +IUSE="tachyon" + +RESTRICT="fetch" + +# currently, tk-8.5* with USE=truetype breaks some +# tk apps such as Sequence Viewer or Timeline. +DEPEND=" + || ( + >=dev-lang/tk-8.5[-truetype] + =dev-lang/tk-8.4* + ) + dev-lang/perl + dev-python/numpy + sci-biology/stride + sci-libs/netcdf + virtual/opengl + x11-libs/fltk:1.1 + x11-libs/libXft" + +RDEPEND="${DEPEND} + x11-terms/xterm + tachyon? ( media-gfx/tachyon )" + +VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD" +# Binary only plugin!! +QA_TEXTRELS="usr/lib*/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so" +QA_PRESTRIPPED="usr/lib*/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so" +QA_DT_HASH_amd64="usr/lib64/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so" +QA_DT_HASH_x86="usr/lib/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so" + +pkg_nofetch() { + elog "Please download ${A} from" + elog "${VMD_DOWNLOAD}" + elog "after agreeing to the license and then move it to " + elog "${DISTDIR}" +} + +src_prepare() { + # apply LINUX-arch patches to vmd configure + cd "${WORKDIR}" && epatch "${FILESDIR}/${P}-gentoo.patch" + + # prepare the plugins + cd "${WORKDIR}"/plugins + + sed -e "s:CC = gcc:CC = $(tc-getCC):" \ + -e "s:CXX = g++:CXX = $(tc-getCXX):" \ + -e "s:COPTO =.*\":COPTO = -fPIC -o\":" \ + -e "s:LOPTO = .*\":LOPTO = ${LDFLAGS} -fPIC -o\":" \ + -e "s:CCFLAGS =.*\":CCFLAGS = ${CFLAGS}\":" \ + -e "s:CXXFLAGS =.*\":CXXFLAGS = ${CXXFLAGS}\":" \ + -e "s:SHLD = gcc:SHLD = $(tc-getCC):" \ + -e "s:-ltcl8.5:-ltcl:" \ + -i Make-arch || die "Failed to set up plugins Makefile" + + # prepare vmd itself + cd "${S}" + + # PREFIX + sed \ + -e "s:/usr/include/:${EPREFIX}/usr/include:g" \ + -i configure || die + + sed -e "s:gentoo-bindir:${ED}/usr/bin:" \ + -e "s:gentoo-libdir:${ED}/usr/$(get_libdir):" \ + -i configure || die "failed to adjust install paths" + + sed -e "s:gentoo-opengl-include:${EPREFIX}/usr/include/GL:" \ + -e "s:gentoo-opengl-libs:${EPREFIX}/usr/$(get_libdir):" \ + -i configure || die "failed to adjust OpenGL paths" + + sed -e "s:gentoo-gcc:$(tc-getCC):" \ + -e "s:gentoo-g++:$(tc-getCXX):" \ + -e "s:gentoo-cflags:${CFLAGS}:" \ + -e "s:gentoo-cxxflags:${CXXFLAGS}:" \ + -e "s:gentoo-ldflags:${LDFLAGS}:g" \ + -i configure || die "Failed to adjust C compiler/flags" + + sed -e "s:gentoo-plugindir:${WORKDIR}/plugins:" \ + -i configure || die "Failed to set up linking to plugin files" + + sed -e "s:gentoo-fltk-include:${EPREFIX}/usr/include/fltk-1.1:" \ + -e "s:gentoo-fltk-libs:${EPREFIX}/usr/$(get_libdir)/fltk-1.1 -Wl,-rpath,${EPREFIX}/usr/$(get_libdir)/fltk-1.1:" \ + -i configure || die "failed setting up fltk" + + sed -e "s:gentoo-netcdf-include:${EPREFIX}/usr/include:" \ + -e "s:gentoo-netcdf-libs:${EPREFIX}/usr/$(get_libdir):" \ + -i configure || die "failed to set up netcdf" + + local NUMPY_INCLUDE="numpy/core/include" + sed -e "s:gentoo-python-include:${EPREFIX}$(python_get_includedir):" \ + -e "s:gentoo-python-lib:${EPREFIX}$(python_get_libdir):" \ + -e "s:gentoo-python-link:$(PYTHON):" \ + -e "s:gentoo-numpy-include:${EPREFIX}$(python_get_sitedir)/${NUMPY_INCLUDE}:" \ + -i configure || die "failed setting up python" + + sed -e "s:LINUXPPC:LINUX:g" \ + -e "s:LINUXALPHA:LINUX:g" \ + -e "s:LINUXAMD64:LINUX:g" \ + -i "${S}"/bin/vmd.sh || die "failed setting up vmd wrapper script" +} + +src_configure() { + local myconfig="LINUX OPENGL FLTK TK TCL PTHREADS PYTHON IMD NETCDF NUMPY NOSILENT" + rm -f configure.options && echo $myconfig >> configure.options + + ./configure &> /dev/null || die "failed to configure" +} + +src_compile() { + # build plugins + cd "${WORKDIR}"/plugins + + emake -j1 \ + LINUX TCLINC="-I${EPREFIX}/usr/include" \ + TCLLIB="-L${EPREFIX}/usr/$(get_libdir)" \ + NETCDFLIB="-L${EPREFIX}/usr/$(get_libdir)" \ + NETCDFINC="-I${EPREFIX}/usr/include" \ + NETCDFLDFLAGS="-lnetcdf" \ + || die "failed to build plugins" + + # build vmd + cd "${S}"/src + emake || die "failed to build vmd" +} + +src_install() { + # install plugins + cd "${WORKDIR}"/plugins + PLUGINDIR=${ED}/usr/$(get_libdir)/${PN}/plugins make distrib || \ + die "failed to install plugins" + + # install vmd + cd "${S}"/src + make install || die "failed to install vmd" + + # export STRIDE_BIN so VMD knows where to find stride + echo "STRIDE_BIN=${EPREFIX}/usr/bin/stride" > "${T}"/99${PN} || \ + die "Failed to create vmd env file" + doenvd "${T}"/99${PN} || die "Failed to install vmd env file" + + # install docs + cd "${S}" + dodoc Announcement README doc/ig.pdf doc/ug.pdf + + # remove some of the things we don't want and need in + # /usr/lib + cd "${ED}"/usr/$(get_libdir)/vmd + rm -fr doc README Announcement LICENSE || \ + die "failed to clean up /usr/lib/vmd directory" + + # adjust path in vmd wrapper + sed \ + -e "s:${ED}::" -i "${ED}"/usr/bin/${PN} \ + -e "/^defaultvmddir/s:^.*$:defaultvmddir=\"${EPREFIX}/usr/$(get_libdir)/${PN}\":g" \ + || die "failed to set up vmd wrapper script" + + # install icon and generate desktop entry + insinto /usr/share/pixmaps + doins "${FILESDIR}"/vmd.png || die "Failed to install vmd icon" + insinto /usr/share/applications + doins "${FILESDIR}"/vmd.desktop || die "Failed to install desktop entry" +} |