diff options
Diffstat (limited to 'sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild')
| -rw-r--r-- | sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild b/sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild new file mode 100644 index 000000000000..4b95c05a3b7c --- /dev/null +++ b/sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild @@ -0,0 +1,46 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild,v 1.1 2009/06/05 15:16:05 weaver Exp $ + +EAPI="2" + +inherit eutils + +DESCRIPTION="Whole-genome shotgun assembler based on the Celera Assembler" +HOMEPAGE="http://sourceforge.net/projects/wgs-assembler/" +SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2" + +LICENSE="GPL-2" +SLOT="0" +IUSE="" +KEYWORDS="~x86 ~amd64" + +DEPEND="x11-libs/libXt" +RDEPEND="${DEPEND} + app-shells/tcsh + dev-perl/Log-Log4perl" + +S="${WORKDIR}/wgs-${PV}" + +src_compile() { + emake -C src -j1 SITE_NAME=LOCAL || die +} + +src_install() { + OSTYPE=$(uname) + MACHTYPE=$(uname -m) + MACHTYPE=${MACHTYPE/x86_64/amd64} + MY_S="${OSTYPE}-${MACHTYPE}" + sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die + + sed -i '/sub getBinDirectory/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die + sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die + insinto /usr/share/${PN} + doins -r ${MY_S}/bin/spec + insinto /usr/share/${PN}/lib + doins -r ${MY_S}/bin/TIGR || die + rm -rf ${MY_S}/bin/{TIGR,spec} + dobin ${MY_S}/bin/* || die + dolib.a ${MY_S}/lib/* || die + dodoc README +} |