New Addition

(Portage version: 2.2_rc67/cvs/Linux x86_64)

4 files changed, 112 insertions, 0 deletions

diff --git a/sci-chemistry/prekin/ChangeLog b/sci-chemistry/prekin/ChangeLog
new file mode 100644
index 000000000000..47e68d5f385a
--- /dev/null
+++ b/sci-chemistry/prekin/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-chemistry/prekin
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/ChangeLog,v 1.1 2010/07/18 08:57:09 jlec Exp $
+
+*prekin-6.51.081122 (18 Jul 2010)
+
+  18 Jul 2010; Justin Lecher <jlec@gentoo.org>
+  +files/6.51.081122-Makefile.patch, +prekin-6.51.081122.ebuild,
+  +metadata.xml:
+  New Addition
+
diff --git a/sci-chemistry/prekin/files/6.51.081122-Makefile.patch b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
new file mode 100644
index 000000000000..5fd9d00d9b06
--- /dev/null
+++ b/sci-chemistry/prekin/files/6.51.081122-Makefile.patch
@@ -0,0 +1,41 @@
+diff --git a/Makefile.linux b/Makefile.linux
+index 65a021a..3daacd8 100755
+--- a/Makefile.linux
++++ b/Makefile.linux
+@@ -1,15 +1,15 @@
+ #
+-CFLAGS = -I/usr/X11R6/include  
++CFLAGS += -I/usr/X11R6/include  
+ 
+ ifeq ($(MAKECMDGOALS),debug)
+ CFLAGS = -g -I/usr/X11R6/include  
+ endif
+ 
+-LIBS = -L/usr/lib -L/usr/X11R6/lib -lXmu -lXm -lXt -lSM -lICE -lXext -lX11
++LIBS = -L/usr/GENTOOLIBDIR -L/usr/X11R6/lib -lXmu -lXm -lXt -lSM -lICE -lXext -lX11
+ 
+ ifeq ($(MAKECMDGOALS),nogui)
+-CFLAGS = -D NOGUI -I/usr/X11R6/include
+-LIBS = -L/usr/lib -L/usr/X11R6/lib -lXmu -lXt -lSM -lICE -lXext -lX11
++CFLAGS += -D NOGUI -I/usr/X11R6/include
++LIBS = -L/usr/GENTOOLIBDIR -L/usr/X11R6/lib -lXmu -lXt -lSM -lICE -lXext -lX11
+ endif
+ 
+ FIN =  -lm -pthread #for RH9.0, ok for RH7.3 & RH8.0
+@@ -26,13 +26,13 @@ OBJS = PKINANGL.o PKINCRTL.o PKINCSBS.o PKINCSUB.o PKINCOUT.o PKINMENU.o PKINROT
+ # Commands specific to clients created by this Makefile 
+ 
+ prekin: $(OBJS)
+-	cc -o prekin $(CFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN)
++	cc -o prekin $(CFLAGS) $(LDFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN)
+ 
+ debug: $(OBJS)
+-	cc -o prekin $(CFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN)
++	cc -o prekin $(CFLAGS) $(LDFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN)
+ 
+ nogui: $(OBJS)
+-	cc -o prekin $(CFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN)
++	cc -o prekin $(CFLAGS) $(LDFLAGS) $(OBJS) -L/usr/X11R6/lib $(LIBS) -ldl $(FIN)
+ 
+ clean:
+ 	rm *.o
diff --git a/sci-chemistry/prekin/metadata.xml b/sci-chemistry/prekin/metadata.xml
new file mode 100644
index 000000000000..9a1f70b1fd6f
--- /dev/null
+++ b/sci-chemistry/prekin/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-chemistry</herd>
+<use>
+  <flag name='gui'>build gui support</flag>
+</use>
+</pkgmetadata>
diff --git a/sci-chemistry/prekin/prekin-6.51.081122.ebuild b/sci-chemistry/prekin/prekin-6.51.081122.ebuild
new file mode 100644
index 000000000000..efe0dabb7ea2
--- /dev/null
+++ b/sci-chemistry/prekin/prekin-6.51.081122.ebuild
@@ -0,0 +1,52 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/prekin/prekin-6.51.081122.ebuild,v 1.1 2010/07/18 08:57:09 jlec Exp $
+
+EAPI="2"
+
+inherit toolchain-funcs eutils multilib
+
+MY_P="${PN}.${PV}"
+
+DESCRIPTION="Prepares molecular kinemages (input files for Mage & KiNG) from PDB-format coordinate files"
+HOMEPAGE="http://kinemage.biochem.duke.edu/software/prekin.php"
+SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/prekin/${MY_P}.src.tgz"
+
+LICENSE="richardson"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="X"
+
+RDEPEND="
+	x11-libs/libX11
+	x11-libs/libXt
+	X? ( 	x11-libs/openmotif )"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	epatch "${FILESDIR}"/${PV}-Makefile.patch
+	sed  \
+		-e 's:cc:$(CC):g' \
+		-e "s:GENTOOLIBDIR:$(get_libdir):g" \
+		"${S}"/Makefile.linux > Makefile
+}
+
+src_compile() {
+	local mytarget
+
+	if use X; then
+		mytarget="${PN}"
+	else
+		mytarget="nogui"
+	fi
+
+	emake \
+		CC="$(tc-getCC)" \
+		${mytarget} || die "make failed"
+}
+
+src_install() {
+	dobin "${S}"/prekin || die "dobin failed"
+}