sci-biology/bioperl: Drop versions with unsolvable dep sets

(Portage version: 2.2.0_alpha142/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)

3 files changed, 5 insertions, 129 deletions

diff --git a/sci-biology/bioperl/ChangeLog b/sci-biology/bioperl/ChangeLog
index 48149987fa64..9758b6ccb332 100644
--- a/sci-biology/bioperl/ChangeLog
+++ b/sci-biology/bioperl/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/bioperl
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.51 2012/04/12 17:40:35 tove Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.52 2012/10/28 14:58:15 jlec Exp $
+
+  28 Oct 2012; Justin Lecher <jlec@gentoo.org> -bioperl-1.5.1-r1.ebuild,
+  -bioperl-1.6.1.ebuild:
+  Drop versions with unsolvable dep sets
 
   12 Apr 2012; Torsten Veller <tove@gentoo.org> metadata.xml:
   Fix cpan distribution in metadata.xml
diff --git a/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild b/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild
deleted file mode 100644
index 38124aa777b1..000000000000
--- a/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild
+++ /dev/null
@@ -1,52 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild,v 1.11 2012/03/24 19:44:30 armin76 Exp $
-
-inherit perl-module eutils
-
-DESCRIPTION="Perl tools for bioinformatics - Core modules"
-HOMEPAGE="http://www.bioperl.org/"
-SRC_URI="http://www.bioperl.org/DIST/${P}.tar.bz2"
-
-LICENSE="Artistic GPL-2"
-SLOT="0"
-KEYWORDS="amd64 ~ppc x86"
-IUSE="mysql gd"
-
-DEPEND="
-	virtual/perl-File-Temp
-	dev-perl/HTML-Parser
-	dev-perl/IO-String
-	dev-perl/IO-stringy
-	dev-perl/SOAP-Lite
-	virtual/perl-Storable
-	dev-perl/XML-DOM
-	dev-perl/XML-Parser
-	dev-perl/XML-Writer
-	dev-perl/XML-Twig
-	dev-perl/libxml-perl
-	dev-perl/libwww-perl
-	dev-perl/Graph
-	dev-perl/Text-Shellwords
-	~sci-libs/io_lib-1.8.12b
-	!>=sci-libs/io_lib-1.9
-	gd? (
-			>=dev-perl/GD-1.32-r1
-			dev-perl/SVG
-			dev-perl/GD-SVG
-		)
-	mysql? ( >=dev-perl/DBD-mysql-2.1004-r3 )"
-
-src_compile() {
-	yes "" | perl Makefile.PL ${myconf} \
-	         PREFIX=${D}/usr INSTALLDIRS=vendor
-}
-
-src_test() {
-	make test || die "Tests failed."
-}
-
-src_install() {
-	mydoc="AUTHORS BUGS FAQ"
-	perl-module_src_install
-}
diff --git a/sci-biology/bioperl/bioperl-1.6.1.ebuild b/sci-biology/bioperl/bioperl-1.6.1.ebuild
deleted file mode 100644
index 78dd53016cc0..000000000000
--- a/sci-biology/bioperl/bioperl-1.6.1.ebuild
+++ /dev/null
@@ -1,76 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.1.ebuild,v 1.3 2009/10/02 14:51:51 weaver Exp $
-
-EAPI="2"
-
-inherit perl-module
-
-SUBPROJECTS="+db +network +run"
-MIN_PV="1.6"
-
-DESCRIPTION="Perl tools for bioinformatics - Core modules"
-HOMEPAGE="http://www.bioperl.org/"
-SRC_URI="http://www.bioperl.org/DIST/BioPerl-${PV}.tar.bz2"
-
-LICENSE="Artistic GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="-minimal graphviz sqlite ${SUBPROJECTS}"
-
-CDEPEND="dev-perl/Data-Stag
-	dev-perl/libwww-perl
-	!minimal? (
-		dev-perl/Ace
-		dev-perl/Spreadsheet-ParseExcel
-		dev-perl/Spreadsheet-WriteExcel
-		>=dev-perl/XML-SAX-0.15
-		dev-perl/Graph
-		dev-perl/SOAP-Lite
-		dev-perl/Array-Compare
-		dev-perl/SVG
-		dev-perl/XML-Simple
-		dev-perl/XML-Parser
-		dev-perl/XML-Twig
-		>=dev-perl/HTML-Parser-3.60
-		>=dev-perl/XML-Writer-0.4
-		dev-perl/Clone
-		dev-perl/XML-DOM
-		dev-perl/set-scalar
-		dev-perl/XML-XPath
-		dev-perl/XML-DOM-XPath
-		dev-perl/Algorithm-Munkres
-		dev-perl/Data-Stag
-		dev-perl/Math-Random
-		dev-perl/PostScript
-		dev-perl/Convert-Binary-C
-		dev-perl/SVG-Graph
-	)
-	graphviz? ( dev-perl/GraphViz )
-	sqlite? ( dev-perl/DBD-SQLite )"
-DEPEND="virtual/perl-Module-Build
-	${CDEPEND}"
-# In perl-overlay
-#	>=virtual/perl-ExtUtils-Manifest-1.52 (to CDEPEND?)
-#	>=perl-CPAN/perl-CPAN-1.81
-RDEPEND="${CDEPEND}"
-PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
-	db? ( >=sci-biology/bioperl-db-${MIN_PV} )
-	network? ( >=sci-biology/bioperl-network-${MIN_PV} )
-	run? ( >=sci-biology/bioperl-run-${MIN_PV} )"
-
-S="${WORKDIR}/BioPerl-${PV}"
-
-src_configure() {
-	sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
-		-e "/'CPAN' *=> *1.81/d" \
-		-e "/'ExtUtils::Manifest' *=> *'1.52'/d" "${S}/Build.PL" || die
-
-	if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi
-	perl-module_src_configure
-}
-
-src_install() {
-	mydoc="AUTHORS BUGS FAQ"
-	perl-module_src_install
-}