diff options
author | Olivier Fisette <ribosome@gentoo.org> | 2005-02-23 04:09:28 +0000 |
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committer | Olivier Fisette <ribosome@gentoo.org> | 2005-02-23 04:09:28 +0000 |
commit | 52c996968cc95cd1cfc50d71a2ed7d55c50db52c (patch) | |
tree | 9b2f86c1f0300819a8f4aecc7f4eee6636e3005c /sci-biology | |
parent | Install static library again. Add /etc/dmtab and new rc-scripts addon for (diff) | |
download | gentoo-2-52c996968cc95cd1cfc50d71a2ed7d55c50db52c.tar.gz gentoo-2-52c996968cc95cd1cfc50d71a2ed7d55c50db52c.tar.bz2 gentoo-2-52c996968cc95cd1cfc50d71a2ed7d55c50db52c.zip |
Added support for the "emboss" and "minimal" "USE" flags.
(Portage version: 2.0.51.16)
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/prints/ChangeLog | 5 | ||||
-rw-r--r-- | sci-biology/prints/prints-37.0.ebuild | 16 | ||||
-rw-r--r-- | sci-biology/prosite/ChangeLog | 5 | ||||
-rw-r--r-- | sci-biology/prosite/prosite-18.44.ebuild | 18 |
4 files changed, 27 insertions, 17 deletions
diff --git a/sci-biology/prints/ChangeLog b/sci-biology/prints/ChangeLog index 71bebc381a09..fbca962b1211 100644 --- a/sci-biology/prints/ChangeLog +++ b/sci-biology/prints/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/prints # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/ChangeLog,v 1.4 2005/02/02 21:32:12 j4rg0n Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/ChangeLog,v 1.5 2005/02/23 04:06:27 ribosome Exp $ + + 22 Feb 2005; Olivier Fisette <ribosome@gentoo.org> prints-37.0.ebuild: + Added support for the "emboss" and "minimal" "USE" flags. 02 Feb 2005; Lina Pezzella <j4rg0n@gentoo.org> prints-37.0.ebuild: Stable ppc-macos diff --git a/sci-biology/prints/prints-37.0.ebuild b/sci-biology/prints/prints-37.0.ebuild index 2fc7fa47d1c0..4a658fdbae14 100644 --- a/sci-biology/prints/prints-37.0.ebuild +++ b/sci-biology/prints/prints-37.0.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/prints-37.0.ebuild,v 1.3 2005/02/02 21:32:12 j4rg0n Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/prints-37.0.ebuild,v 1.4 2005/02/23 04:06:27 ribosome Exp $ DESCRIPTION="A protein motif fingerprint database" HOMEPAGE="http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/" @@ -13,27 +13,29 @@ SRC_URI="ftp://ftp.ebi.ac.uk/pub/databases/${PN}/newpr.lis.gz LICENSE="public-domain" SLOT="0" KEYWORDS="x86 ~ppc ppc-macos" -IUSE="no-emboss no-rawdb" +IUSE="emboss minimal" +# Minimal build keeps only the indexed files (if applicable) and the documentation. +# The non-indexed database is not installed. S=${WORKDIR} src_compile() { - # Index the database for use with emboss if emboss is installed and - # the user did not explicitly request not to index the database. - if [ -e /usr/bin/printsextract ] && ! use no-emboss; then + if use emboss; then mkdir PRINTS + echo einfo "Indexing PRINTS for usage with EMBOSS." EMBOSS_DATA=. printsextract -auto -infile prints37_0.dat || die \ "Indexing PRINTS failed." + echo fi } src_install() { - if ! use no-rawdb; then + if ! use minimal; then insinto /usr/share/${PN} doins ${PN}37_0.{all.fasta,dat,lis,nam,vsn} newpr.lis fi - if [ -e /usr/bin/printsextract ] && ! use no-emboss; then + if use emboss; then insinto /usr/share/EMBOSS/data/PRINTS doins PRINTS/* fi diff --git a/sci-biology/prosite/ChangeLog b/sci-biology/prosite/ChangeLog index e98b2e4abc2a..6690ffe3d497 100644 --- a/sci-biology/prosite/ChangeLog +++ b/sci-biology/prosite/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/prosite # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.8 2005/02/19 04:31:09 j4rg0n Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/ChangeLog,v 1.9 2005/02/23 04:09:28 ribosome Exp $ + + 22 Feb 2005; Olivier Fisette <ribosome@gentoo.org> prosite-18.44.ebuild: + Added support for the "emboss" and "minimal" "USE" flags. 18 Feb 2005; Lina Pezzella <j4rg0n@gentoo.org> prosite-18.43.ebuild: Stable ppc-macos diff --git a/sci-biology/prosite/prosite-18.44.ebuild b/sci-biology/prosite/prosite-18.44.ebuild index e3b90008a822..77b87c96f8c2 100644 --- a/sci-biology/prosite/prosite-18.44.ebuild +++ b/sci-biology/prosite/prosite-18.44.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.44.ebuild,v 1.1 2005/02/03 00:35:51 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prosite/prosite-18.44.ebuild,v 1.2 2005/02/23 04:09:28 ribosome Exp $ DESCRIPTION="A protein families and domains database" HOMEPAGE="http://ca.expasy.org/prosite" @@ -8,27 +8,29 @@ SRC_URI="mirror://gentoo/${P}.tar.bz2" LICENSE="swiss-prot" SLOT="0" KEYWORDS="~x86 ~ppc ~ppc-macos" -IUSE="no-emboss no-rawdb" +IUSE="emboss minimal" +# Minimal build keeps only the indexed files (if applicable) and the documentation. +# The non-indexed database is not installed. src_compile() { - # Index the database for use with EMBOSS if EMBOSS is installed and - # the user did not explicitly request not to index the database. - if [ -e /usr/bin/prosextract ] && ! use no-emboss; then + if use emboss; then mkdir PROSITE + echo einfo "Indexing PROSITE for usage with EMBOSS." - EMBOSS_DATA=. prosextract -auto -infdat ${S} || die \ + EMBOSS_DATA="." prosextract -auto -infdat ${S} || die \ "Indexing PROSITE failed." + echo fi } src_install() { - if ! use no-rawdb; then + if ! use minimal; then insinto /usr/share/${PN} doins ${PN}.{doc,dat,lis} fi dodoc *.txt dohtml prosuser.htm - if [ -e /usr/bin/prosextract ] && ! use no-emboss; then + if use emboss; then insinto /usr/share/EMBOSS/data/PROSITE doins PROSITE/* fi |