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author | Andrey Kislyuk <weaver@gentoo.org> | 2010-02-08 18:36:30 +0000 |
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committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-02-08 18:36:30 +0000 |
commit | 38cd18d55378bd7c241514a39e5a26746bdaa5e8 (patch) | |
tree | 55ec5b0ac5ce3cf10168b767504ffe47afaf73d7 /sci-biology/ucsc-genome-browser/ucsc-genome-browser-223.ebuild | |
parent | Version bump. (diff) | |
download | gentoo-2-38cd18d55378bd7c241514a39e5a26746bdaa5e8.tar.gz gentoo-2-38cd18d55378bd7c241514a39e5a26746bdaa5e8.tar.bz2 gentoo-2-38cd18d55378bd7c241514a39e5a26746bdaa5e8.zip |
Version bump and set SLOT per bug 300736
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/ucsc-genome-browser/ucsc-genome-browser-223.ebuild')
-rw-r--r-- | sci-biology/ucsc-genome-browser/ucsc-genome-browser-223.ebuild | 92 |
1 files changed, 92 insertions, 0 deletions
diff --git a/sci-biology/ucsc-genome-browser/ucsc-genome-browser-223.ebuild b/sci-biology/ucsc-genome-browser/ucsc-genome-browser-223.ebuild new file mode 100644 index 000000000000..cb019b7decf2 --- /dev/null +++ b/sci-biology/ucsc-genome-browser/ucsc-genome-browser-223.ebuild @@ -0,0 +1,92 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/ucsc-genome-browser/ucsc-genome-browser-223.ebuild,v 1.1 2010/02/08 18:36:30 weaver Exp $ + +EAPI="2" + +inherit toolchain-funcs flag-o-matic webapp + +DESCRIPTION="The UCSC genome browser suite, also known as Jim Kent's library and GoldenPath" +HOMEPAGE="http://genome.ucsc.edu" +SRC_URI="http://hgdownload.cse.ucsc.edu/admin/jksrc.v${PV}.zip" + +LICENSE="blat" +SLOT="0" +WEBAPP_MANUAL_SLOT="yes" +KEYWORDS="~amd64 ~x86" +IUSE="+mysql +server" + +DEPEND="app-arch/unzip + !<sci-biology/ucsc-genome-browser-223 + mysql? ( virtual/mysql ) + server? ( virtual/httpd-cgi )" # TODO: test with other webservers +RDEPEND="${DEPEND}" + +S="${WORKDIR}/kent" + +src_prepare() { + if use server && ! use mysql; then die "USE flag server requires USE flag mysql"; fi + use server && webapp_src_preinst + sed -i -e 's/-Werror//' \ + -e "s/CC=gcc/CC=$(tc-getCC) ${CFLAGS}/" \ + src/inc/common.mk || die + find -name makefile -or -name cgi_build_rules.mk \ + | xargs sed -i -e 's/-${USER}//g' -e 's/-$(USER)//g' || die +} + +src_compile() { + export MACHTYPE=${MACHTYPE/-*/} \ + BINDIR="${WORKDIR}/destdir/opt/${PN}/bin" \ + SCRIPTS="${WORKDIR}/destdir/opt/${PN}/cluster/scripts" \ + ENCODE_PIPELINE_BIN="${WORKDIR}/destdir/opt/${PN}/cluster/data/encode/pipeline/bin" \ + PATH="${BINDIR}:${PATH}" \ + STRIP="echo 'skipping strip' " + + export MYSQLLIBS="none" MYSQLINC="none" DOCUMENTROOT="none" CGI_BIN="none" + + use mysql && export MYSQLLIBS="${ROOT}usr/lib/mysql/libmysqlclient.a -lz -lssl" \ + MYSQLINC="${ROOT}usr/include/mysql" + + use server && export DOCUMENTROOT="${WORKDIR}/destdir/${MY_HTDOCSDIR}" \ + CGI_BIN="${WORKDIR}/destdir/${MY_HTDOCSDIR}/cgi-bin" + + mkdir -p "$BINDIR" "$SCRIPTS" "$ENCODE_PIPELINE_BIN" || die + use server && mkdir -p "$CGI_BIN" "$DOCUMENTROOT" + + emake -C src clean || die + emake -C src/lib || die + emake -C src/jkOwnLib || die + emake -C src/utils/stringify || die + emake -C src blatSuite || die + if use mysql; then + emake -C src/hg utils || die + emake -C src utils || die + emake -C src libs userApps || die + if use server; then + emake -C src/hg || die + emake -C src || die + fi + fi +} + +src_install() { + use server && webapp_src_preinst + cp -a "${WORKDIR}"/destdir/* "${D}" || die + dolib.a src/lib/${MACHTYPE/-*/}/*.a || die + echo "PATH=/opt/${PN}/bin" > "${S}/99${PN}" + doenvd "${S}/99${PN}" + + use server && webapp_postinst_txt en src/product/README.QuickStart + use server && webapp_src_install + + insinto "/usr/include/${PN}" + doins src/inc/*.h + insinto "/usr/share/${PN}" + doins -r src/product + keepdir "/usr/share/doc/${PF}" + find -name 'README*' -or -name '*.doc' | grep -v test | cpio -padv "${D}/usr/share/doc/${PF}" || die +} + +pkg_postinst() { + use server && webapp_pkg_postinst +} |