Adding latest version.

(Portage version: 2.1.9.35/cvs/Linux x86_64)

2 files changed, 85 insertions, 2 deletions

diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog
index e403271eca29..0ffacaa3eece 100644
--- a/sci-biology/seaview/ChangeLog
+++ b/sci-biology/seaview/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/seaview
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.36 2010/07/16 22:05:28 hwoarang Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.37 2011/02/01 02:53:26 je_fro Exp $
+
+*seaview-4.2.12 (01 Feb 2011)
+
+  01 Feb 2011; Jeff Gardner <je_fro@gentoo.org> +seaview-4.2.12.ebuild:
+  Adding latest version.
 
   16 Jul 2010; Markos Chandras <hwoarang@gentoo.org> seaview-4.2.5.ebuild:
   Stable on amd64 wrt bug #328429
diff --git a/sci-biology/seaview/seaview-4.2.12.ebuild b/sci-biology/seaview/seaview-4.2.12.ebuild
new file mode 100644
index 000000000000..c6199ad14fea
--- /dev/null
+++ b/sci-biology/seaview/seaview-4.2.12.ebuild
@@ -0,0 +1,78 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-4.2.12.ebuild,v 1.1 2011/02/01 02:53:26 je_fro Exp $
+
+EAPI="2"
+
+inherit toolchain-funcs multilib eutils base
+
+DESCRIPTION="A graphical multiple sequence alignment editor"
+HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
+SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${PN}_${PV}.tar.gz"
+
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="+pdf +xft"
+
+DEPEND="x11-libs/fltk:1.1
+	pdf? ( media-libs/pdflib )
+	xft? (	x11-libs/libXft
+			x11-libs/fltk:1.1[xft] )"
+RDEPEND="${DEPEND}
+	sci-biology/clustalw
+	|| ( sci-libs/libmuscle sci-biology/muscle )
+	sci-biology/phyml"
+
+S="${WORKDIR}/${PN}"
+
+src_prepare() {
+	# respect CXXFLAGS (package uses them as CFLAGS)
+	sed -i \
+		-e "s:^CXX.*:CXX = $(tc-getCXX):" \
+		-e "s:\$(OPT):${CXXFLAGS}:" \
+		-e "s:^OPT:#OPT:" \
+		-e "s:^#IFLTK .*:IFLTK = $(fltk-config --use-images --cxxflags):" \
+		-e "s:^#LFLTK .*:LFLTK = $(fltk-config --use-images --ldflags):" \
+		-e "s:^USE_XFT:#USE_XFT:" \
+		-e "s:^#HELPFILE:HELPFILE:" \
+		-e "s:^#PHYMLNAME:PHYMLNAME:" \
+		Makefile || die "sed failed while editing Makefile"
+
+	if use pdf; then
+		sed -i \
+			-e "s:PDF_PS_FLAGS = -DNO_PDF:#PDF_PS_FLAGS = -DNO_PDF:" \
+			-e "s:PDF_PS = postscript:#PDF_PS = postscript:" \
+			-e "s:#PDF_INC = \$(HOME)/PDFlibLite:PDF_INC = /usr/include:" \
+			-e "s:#PDF_LIB = \$(HOME)/PDFlibLite:PDF_LIB = /usr/lib:" \
+			-e "s:#PDF_PS = pdf:PDF_PS = pdf:" \
+			-e "s:#PDF_PS_FLAGS = -I\$(PDF_INC):PDF_PS_FLAGS = -I\$(PDF_INC):" \
+			-e "s:#LPDF = -L\$(PDF_LIB) -lpdf:LPDF = -L\$(PDF_LIB) -lpdf:" \
+			Makefile || die "sed failed while editing Makefile to enable pdf output"
+	fi
+
+	if use xft; then
+		sed -i \
+			-e "s:^#USE_XFT .*:USE_XFT = -DUSE_XFT $(xft-config --cflags):" \
+			-e "s:-lXft:$(xft-config --libs):" \
+			Makefile || die "sed failed while editing Makefile to enable xft"
+	else
+		sed -i -e "s:-lXft::" Makefile || die
+	fi
+	base_src_prepare
+}
+
+src_install() {
+	dobin seaview || die
+
+	# /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile
+	insinto /usr/share/seaview
+	doins example.nxs seaview.html
+
+	insinto /usr/share/seaview/images
+	doins seaview.xpm || die
+
+	make_desktop_entry seaview Seaview
+
+	doman seaview.1 || die
+}