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| author |   Samuli Suominen <ssuominen@gentoo.org> | 2009-08-09 14:21:54 +0000 |
|---|---|---|
| committer | Samuli Suominen <ssuominen@gentoo.org> | 2009-08-09 14:21:54 +0000 |
| commit | d8888d923a9043c8b10f165a4b2f4752237ff872 (patch) | |
| tree | f2dd5bc82a5210324f9997e5050a6e963140e5ec /sci-biology/piler | |
| parent | Masking dev-db/sqsh for QA removal. (diff) | |
| download | gentoo-2-d8888d923a9043c8b10f165a4b2f4752237ff872.tar.gz gentoo-2-d8888d923a9043c8b10f165a4b2f4752237ff872.tar.bz2 gentoo-2-d8888d923a9043c8b10f165a4b2f4752237ff872.zip | |
Fix building with GLIBC 2.10+ wrt #279628.
(Portage version: 2.2_rc36/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/piler')
| -rw-r--r-- | sci-biology/piler/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/piler/files/piler-1.0-glibc-2.10.patch | 12 | ||||
| -rw-r--r-- | sci-biology/piler/piler-1.0.ebuild | 10 |
3 files changed, 24 insertions, 4 deletions
diff --git a/sci-biology/piler/ChangeLog b/sci-biology/piler/ChangeLog index febfd2d46abc..e3c0a686565e 100644 --- a/sci-biology/piler/ChangeLog +++ b/sci-biology/piler/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/piler # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/piler/ChangeLog,v 1.1 2009/07/25 18:15:30 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/piler/ChangeLog,v 1.2 2009/08/09 14:21:54 ssuominen Exp $ + + 09 Aug 2009; Samuli Suominen <ssuominen@gentoo.org> piler-1.0.ebuild, + +files/piler-1.0-glibc-2.10.patch: + Fix building with GLIBC 2.10+ wrt #279628. *piler-1.0 (25 Jul 2009) diff --git a/sci-biology/piler/files/piler-1.0-glibc-2.10.patch b/sci-biology/piler/files/piler-1.0-glibc-2.10.patch new file mode 100644 index 000000000000..4c7f124c5e3d --- /dev/null +++ b/sci-biology/piler/files/piler-1.0-glibc-2.10.patch @@ -0,0 +1,12 @@ +diff -ur piler.orig/gff.cpp piler/gff.cpp +--- piler.orig/gff.cpp 2004-12-18 01:25:29.000000000 +0200 ++++ piler/gff.cpp 2009-08-09 17:22:33.000000000 +0300 +@@ -70,7 +70,7 @@ + const char *Attrs = Fields[8];
+
+ // Truncate attrs if comment found
+- char *Pound = strchr(Attrs, '#');
++ char *Pound = const_cast <char*> (strchr(Attrs, '#'));
+ if (0 != Pound)
+ *Pound = 0;
+
diff --git a/sci-biology/piler/piler-1.0.ebuild b/sci-biology/piler/piler-1.0.ebuild index 674cd82f6af9..1d392d586281 100644 --- a/sci-biology/piler/piler-1.0.ebuild +++ b/sci-biology/piler/piler-1.0.ebuild @@ -1,10 +1,10 @@ # Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/piler/piler-1.0.ebuild,v 1.1 2009/07/25 18:15:30 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/piler/piler-1.0.ebuild,v 1.2 2009/08/09 14:21:54 ssuominen Exp $ EAPI="2" -inherit toolchain-funcs +inherit eutils toolchain-funcs DESCRIPTION="Analysis of repetitive DNA found in genome sequences" HOMEPAGE="http://www.drive5.com/piler/" @@ -21,7 +21,11 @@ RDEPEND="|| ( sci-biology/muscle sci-libs/libmuscle ) sci-biology/pals" -S="${WORKDIR}" +S=${WORKDIR} + +src_prepare() { + epatch "${FILESDIR}"/${P}-glibc-2.10.patch +} src_compile() { emake GPP="$(tc-getCXX)" CFLAGS="${CXXFLAGS}" || die |