Respect CC,LDFLAGS wrt bug 335952. Thanks to Diego for the report and Ross Smith <gaurdro@gmail.com> for the patch.

(Portage version: 2.1.8.3/cvs/Linux x86_64)

2 files changed, 41 insertions, 2 deletions

diff --git a/sci-biology/kalign/ChangeLog b/sci-biology/kalign/ChangeLog
index 2b33062206b7..97acf338966d 100644
--- a/sci-biology/kalign/ChangeLog
+++ b/sci-biology/kalign/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/kalign
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/kalign/ChangeLog,v 1.3 2009/03/21 17:10:35 armin76 Exp $
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/kalign/ChangeLog,v 1.4 2010/09/04 18:16:18 xarthisius Exp $
+
+*kalign-2.03-r1 (04 Sep 2010)
+
+  04 Sep 2010; Kacper Kowalik <xarthisius@gentoo.org>
+  +kalign-2.03-r1.ebuild:
+  Respect CC,LDFLAGS wrt bug 335952. Thanks to Diego for the report and Ross
+  Smith <gaurdro@gmail.com> for the patch.
 
   21 Mar 2009; Raúl Porcel <armin76@gentoo.org> kalign-2.03.ebuild:
   x86 stable, bug #263043
diff --git a/sci-biology/kalign/kalign-2.03-r1.ebuild b/sci-biology/kalign/kalign-2.03-r1.ebuild
new file mode 100644
index 000000000000..8cc1772b7851
--- /dev/null
+++ b/sci-biology/kalign/kalign-2.03-r1.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/kalign/kalign-2.03-r1.ebuild,v 1.1 2010/09/04 18:16:18 xarthisius Exp $
+
+EAPI=2
+
+inherit toolchain-funcs
+
+DESCRIPTION="Global and progressive multiple sequence alignment"
+HOMEPAGE="http://msa.cgb.ki.se/"
+SRC_URI="mirror://debian/pool/main/k/kalign/${PN}_${PV}.orig.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+S=${WORKDIR}/${PN}
+
+src_prepare() {
+	sed -e "s/\$(CFLAGS) \$(OBJECTS)/\$(LDFLAGS) &/" \
+		-i Makefile.in || die
+}
+
+src_compile() {
+	emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" || die
+}
+
+src_install() {
+	dobin kalign || die
+	dodoc README || die
+}