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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2011-10-31 21:18:17 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2011-10-31 21:18:17 +0000 |
| commit | 71a5e4a51f3979b5ec85b50acc5ba04ad25724d6 (patch) | |
| tree | adb8c91a8fd2137abe10c0ac086af2fe3c64435a /sci-biology/gatk/gatk-9999.ebuild | |
| parent | Version bump, fixes: https://launchpad.net/dulwich/+milestone/0.8.1 (diff) | |
| download | gentoo-2-71a5e4a51f3979b5ec85b50acc5ba04ad25724d6.tar.gz gentoo-2-71a5e4a51f3979b5ec85b50acc5ba04ad25724d6.tar.bz2 gentoo-2-71a5e4a51f3979b5ec85b50acc5ba04ad25724d6.zip | |
New package, ebuild written by me
(Portage version: 2.2.0_alpha45/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/gatk/gatk-9999.ebuild')
| -rw-r--r-- | sci-biology/gatk/gatk-9999.ebuild | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/sci-biology/gatk/gatk-9999.ebuild b/sci-biology/gatk/gatk-9999.ebuild new file mode 100644 index 000000000000..b2e0ca49c1b1 --- /dev/null +++ b/sci-biology/gatk/gatk-9999.ebuild @@ -0,0 +1,45 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-9999.ebuild,v 1.1 2011/10/31 21:18:17 weaver Exp $ + +EAPI=4 + +MY_HASH=885c33a + +EGIT_REPO_URI="https://github.com/broadgsa/gatk.git" + +EANT_BUILD_TARGET="dist" +EANT_NEEDS_TOOLS="true" +JAVA_ANT_REWRITE_CLASSPATH="true" + +#inherit java-pkg-2 java-ant-2 git +inherit java-pkg-2 java-ant-2 + +DESCRIPTION="The Genome Analysis Toolkit" +HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit" +#SRC_URI="https://github.com/broadgsa/gatk/tarball/${PV} -> ${P}.tar.gz" +SRC_URI="" + +LICENSE="as-is" +SLOT="0" +IUSE="" +KEYWORDS="" + +COMMON_DEPS="" +DEPEND=">=virtual/jdk-1.6 + ${COMMON_DEPS}" +RDEPEND=">=virtual/jre-1.6 + ${COMMON_DEPS}" + +S="${WORKDIR}/broadgsa-gatk-${MY_HASH}" + +src_prepare() { + sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die + java-pkg-2_src_prepare +} + +src_install() { + java-pkg_dojar dist/*.jar + java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar + java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar +} |