sci-biology/augustus: Drop old, fixes multiple QA issues, #454822

(Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)

5 files changed, 10 insertions, 119 deletions

diff --git a/sci-biology/augustus/ChangeLog b/sci-biology/augustus/ChangeLog
index 9788516d2361..6d864b40bdf3 100644
--- a/sci-biology/augustus/ChangeLog
+++ b/sci-biology/augustus/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/augustus
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/augustus/ChangeLog,v 1.17 2013/01/31 18:42:11 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/augustus/ChangeLog,v 1.18 2013/01/31 20:33:59 jlec Exp $
+
+  31 Jan 2013; Justin Lecher <jlec@gentoo.org> -augustus-2.3.1.ebuild,
+  -augustus-2.4.ebuild, -augustus-2.5.ebuild, metadata.xml:
+  Drop old, fixes multiple QA issues, #454822
 
   31 Jan 2013; Agostino Sarubbo <ago@gentoo.org> augustus-2.5.5.ebuild:
   Stable for x86, wrt bug #454842
diff --git a/sci-biology/augustus/augustus-2.3.1.ebuild b/sci-biology/augustus/augustus-2.3.1.ebuild
deleted file mode 100644
index 9790356ed4a8..000000000000
--- a/sci-biology/augustus/augustus-2.3.1.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/augustus/augustus-2.3.1.ebuild,v 1.4 2011/06/23 14:58:14 jlec Exp $
-
-EAPI=2
-
-inherit base eutils
-
-DESCRIPTION="Eukaryotic gene predictor"
-HOMEPAGE="http://augustus.gobics.de/"
-SRC_URI="http://augustus.gobics.de/binaries/${PN}.${PV}.src.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/${PN}"
-
-src_compile() {
-	emake -C src clean || die
-	emake -C src || die
-}
-
-src_install() {
-	dobin src/{augustus,etraining,consensusFinder,curve2hints} || die
-	insinto /usr/share/${PN}
-	doins -r config examples scripts docs || die
-	echo "AUGUSTUS_CONFIG_PATH=\"/usr/share/${PN}/config\"" > "${S}/99${PN}"
-	doenvd "${S}/99${PN}" || die
-	dodoc README*.TXT HISTORY.TXT retraining.html
-}
diff --git a/sci-biology/augustus/augustus-2.4.ebuild b/sci-biology/augustus/augustus-2.4.ebuild
deleted file mode 100644
index b12297409483..000000000000
--- a/sci-biology/augustus/augustus-2.4.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/augustus/augustus-2.4.ebuild,v 1.7 2011/06/23 14:58:14 jlec Exp $
-
-EAPI=2
-
-inherit base eutils
-
-DESCRIPTION="Eukaryotic gene predictor"
-HOMEPAGE="http://augustus.gobics.de/"
-SRC_URI="http://augustus.gobics.de/binaries/old/${PN}.${PV}.src.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 x86"
-
-DEPEND=""
-RDEPEND=""
-
-src_prepare() {
-	sed -i 's/${CFLAGS}/${CFLAGS} ${LDFLAGS}/' src/Makefile || die
-	sed -i -e 's/CFLAGS :=/CFLAGS +=/' -e 's/gcc $(CFLAGS)/gcc $(CFLAGS) $(LDFLAGS)/' scripts/*/Makefile || die
-}
-
-src_compile() {
-	emake -C src clean || die
-	emake -C src || die
-}
-
-src_install() {
-	dobin src/{augustus,etraining,consensusFinder,curve2hints} || die
-	insinto /usr/share/${PN}
-	doins -r config examples scripts docs || die
-	echo "AUGUSTUS_CONFIG_PATH=\"/usr/share/${PN}/config\"" > "${S}/99${PN}"
-	doenvd "${S}/99${PN}" || die
-	dodoc README.TXT HISTORY.TXT docs/*
-}
diff --git a/sci-biology/augustus/augustus-2.5.ebuild b/sci-biology/augustus/augustus-2.5.ebuild
deleted file mode 100644
index 33db1bfc1c8c..000000000000
--- a/sci-biology/augustus/augustus-2.5.ebuild
+++ /dev/null
@@ -1,40 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/augustus/augustus-2.5.ebuild,v 1.5 2011/06/23 14:58:14 jlec Exp $
-
-EAPI=2
-
-inherit base eutils
-
-DESCRIPTION="Eukaryotic gene predictor"
-HOMEPAGE="http://augustus.gobics.de/"
-SRC_URI="http://augustus.gobics.de/binaries/${PN}.${PV}.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}/${PN}.${PV}"
-
-src_prepare() {
-	sed -i 's/${CFLAGS}/${CFLAGS} ${LDFLAGS}/' src/Makefile || die
-	sed -i -e 's/CFLAGS :=/CFLAGS +=/' -e 's/gcc $(CFLAGS)/gcc $(CFLAGS) $(LDFLAGS)/' scripts/*/Makefile || die
-}
-
-src_compile() {
-	emake -C src clean || die
-	emake -C src || die
-}
-
-src_install() {
-	dobin src/{augustus,etraining,consensusFinder,curve2hints} || die
-	insinto /usr/share/${PN}
-	doins -r config examples scripts docs || die
-	echo "AUGUSTUS_CONFIG_PATH=\"/usr/share/${PN}/config\"" > "${S}/99${PN}"
-	doenvd "${S}/99${PN}" || die
-	dodoc README.TXT HISTORY.TXT docs/*
-}
diff --git a/sci-biology/augustus/metadata.xml b/sci-biology/augustus/metadata.xml
index 3302123e5718..fc7c76942a10 100644
--- a/sci-biology/augustus/metadata.xml
+++ b/sci-biology/augustus/metadata.xml
@@ -1,9 +1,9 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<maintainer>
-		<email>weaver@gentoo.org</email>
-		<name>Andrey Kislyuk</name>
-	</maintainer>
-	<herd>sci-biology</herd>
+  <maintainer>
+    <email>weaver@gentoo.org</email>
+    <name>Andrey Kislyuk</name>
+  </maintainer>
+  <herd>sci-biology</herd>
 </pkgmetadata>