Moving to sci-chemistry/gromacs

5 files changed, 0 insertions, 154 deletions

diff --git a/app-sci/gromacs/ChangeLog b/app-sci/gromacs/ChangeLog
deleted file mode 100644
index 9f0279a819b2..000000000000
--- a/app-sci/gromacs/ChangeLog
+++ /dev/null
@@ -1,74 +0,0 @@
-# ChangeLog for app-sci/gromacs
-# Copyright 2002-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/gromacs/ChangeLog,v 1.14 2004/06/24 22:02:11 agriffis Exp $
-
-  06 Jun 2004; Danny van Dyk <kugelfang@gentoo.org> gromacs-3.2.1.ebuild:
-  Marked stable on amd64.
-
-  22 Apr 2004; Donnie Berkholz <spyderous@gentoo.org>;
-  -files/gromacs-3.2-all-static-fix.patch, -gromacs-3.1.4-r1.ebuild,
-  -gromacs-3.1.4-r2.ebuild, gromacs-3.2.1.ebuild, -gromacs-3.2.ebuild:
-  Mark 3.2.1 stable on x86. Remove old versions.
-
-  22 Apr 2004; Donnie Berkholz <spyderous@gentoo.org>;
-  gromacs-3.1.4-r1.ebuild, gromacs-3.2.1.ebuild:
-  Add app-shells/tcsh to dependencies (#48691).
-
-  22 Apr 2004; Danny van Dyk <kugelfang@gentoo.org> gromacs-3.2.1.ebuild:
-  marked ~amd64
-
-*gromacs-3.2.1 (02 Apr 2004)
-
-  02 Apr 2004; Donnie Berkholz <spyderous@gentoo.org>; gromacs-3.2.1.ebuild:
-  Version bump, closes #44377.
-
-*gromacs-3.2 (29 Feb 2004)
-
-  29 Feb 2004; Donnie Berkholz <spyderous@gentoo.org>; gromacs-3.2.ebuild,
-  files/gromacs-3.2-all-static-fix.patch:
-  Version bump. New xml2 USE flag.
-
-*gromacs-3.1.4-r2 (28 Feb 2004)
-
-  28 Feb 2004; Donnie Berkholz <spyderous@gentoo.org>;
-  gromacs-3.1.4-r2.ebuild:
-  Closing bug #42989 by installing binaries to /usr/bin. Also discovered libs
-  needed to be installed to /usr/lib. Enabled assembly for Alphas too, if any
-  Alpha user ever tries this.
-
-  04 Oct 2003; Donnie Berkholz <spyderous@gentoo.org>; gromacs-3.1.3.ebuild,
-  gromacs-3.1.4.ebuild:
-  Pulling old versions.
-
-  04 Oct 2003; Donnie Berkholz <spyderous@gentoo.org>;
-  gromacs-3.1.4-r1.ebuild:
-  Fixing fftw dep. Won't compile against fftw-3 yet, in part because it looks
-  for fftw3.h instead of fftw.h, and in part because MPI doesn't work in fftw-3
-  yet.
-
-*gromacs-3.1.4-r1 (23 Mar 2003)
-
-  23 Mar 2003; George Shapovalov <george@gentoo.org> gromacs-3.1.4-r1.ebuild :
-  added mpi support, lam-mpi is the only working implementation at the moment.
-  !IMPORTANT!:
-  Since portage cannot at present check whether optional dependencies of dependencies were turned on, 
-  please check yourself that gromacs and fftw have identical mpi setting.
-  Generally USE="mpi" emerge gromacs should work fine if you did not install fftw previously (with 
-  different mpi off for example).
-
-*gromacs-3.1.4 (08 Nov 2002)
-
-  08 Nov 2002; George Shapovalov <george@gentoo.org> gromacs-3.1.4.ebuild, files/digest-gromacs-3.1.4 :
-
-  new version.
-  !!!IMPORTANT!!!
-  I changed --prefix to point to /usr for FHS compliance.
-  Now the binaries and the libs are getting installed into
-  /usr/i686-pc-linux-gnu/{bin,lib} correspondingly and the data into /usr/share/gromacs-${PV}
-  This seems to fit well in the existing direcory structure and does not conflict with gcc.
-
-*gromacs-3.1.3 (27 Apr 2002)
-  
-  27 Apr 2002; George Shapovalov <george@gentoo.org> all_files :
-
-  initial release. 
diff --git a/app-sci/gromacs/Manifest b/app-sci/gromacs/Manifest
deleted file mode 100644
index c6d395ff8723..000000000000
--- a/app-sci/gromacs/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-MD5 19d76fe83eec7daeb93be37ddf80c48d ChangeLog 2900
-MD5 af1bfbb0777267a03e889b08173f2757 metadata.xml 248
-MD5 52f9213641edab2cd66394df116f9d70 gromacs-3.2.1.ebuild 1897
-MD5 e6cada3bcb0c80d058e7be754fde4612 files/digest-gromacs-3.2.1 66
diff --git a/app-sci/gromacs/files/digest-gromacs-3.2.1 b/app-sci/gromacs/files/digest-gromacs-3.2.1
deleted file mode 100644
index a81d8da1b86b..000000000000
--- a/app-sci/gromacs/files/digest-gromacs-3.2.1
+++ /dev/null
@@ -1 +0,0 @@
-MD5 d298386495f6ee39b3155ce951984485 gromacs-3.2.1.tar.gz 3302723
diff --git a/app-sci/gromacs/gromacs-3.2.1.ebuild b/app-sci/gromacs/gromacs-3.2.1.ebuild
deleted file mode 100644
index 5266ac461855..000000000000
--- a/app-sci/gromacs/gromacs-3.2.1.ebuild
+++ /dev/null
@@ -1,66 +0,0 @@
-# Copyright 1999-2004 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/app-sci/gromacs/gromacs-3.2.1.ebuild,v 1.6 2004/06/24 22:02:11 agriffis Exp $
-
-inherit eutils
-
-IUSE="mpi xml2"
-
-DESCRIPTION="The ultimate molecular dynamics simulation package"
-SRC_URI="ftp://ftp.gromacs.org/pub/${PN}/${P}.tar.gz"
-HOMEPAGE="http://www.gromacs.org/"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="x86 amd64"
-
-#mpi is a local USE flag now
-#May become official when situation with mpich is cleared (now the only mpi implementation awailable is lam-mpi)
-DEPEND="=dev-libs/fftw-2.1*
-	mpi? ( >=sys-cluster/lam-mpi-6.5.6 )
-	>=sys-devel/binutils-2.10.91.0.2
-	app-shells/tcsh
-	xml2? ( dev-libs/libxml2 )"
-
-src_compile() {
-#!!!Please note!!!
-#for troublesome work gromacs should be compiled with the same mpi setting as fftw.
-#Unfortunately portage cannot trace optional dependencies of dependencies at present.
-#Until this (planned) feature is completed, please try to do corresponding check yourself.
-	local myconf
-
-	# Enable asm on Alphas
-	if [ "${ARCH}" = "alpha" ]
-	then
-		myconf="${myconf} --enable-axp-asm"
-	fi
-
-	# static should work but something's broken.
-	# gcc spec file may be screwed up.
-	# Static linking should try -lgcc instead of -lgcc_s.
-	# For more info:
-	# http://lists.debian.org/debian-gcc/2002/debian-gcc-200201/msg00150.html
-	econf \
-		--enable-fortran \
-		--datadir=/usr/share/${P} \
-		--bindir=/usr/bin \
-		--libdir=/usr/lib \
-		`use_with xml2 xml` \
-		`use_enable mpi` \
-		${myconf} || die "configure failed"
-
-	#	`use_enable static all-static` \
-
-	emake || die
-}
-
-src_install () {
-	make DESTDIR=${D} install || die
-
-	# Install documentation.
-	dodoc AUTHORS COPYING INSTALL README
-
-	#move html docs under /usr/share/doc
-	#and leave examples and templates under /usr/gromacs...
-	mv ${D}/usr/share/${P}/html ${D}/usr/share/doc/${PF}
-}
diff --git a/app-sci/gromacs/metadata.xml b/app-sci/gromacs/metadata.xml
deleted file mode 100644
index 211b8bd0f0a4..000000000000
--- a/app-sci/gromacs/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<maintainer>
-<email>spyderous@gentoo.org</email>
-<name>Donnie Berkholz</name>
-</maintainer>
-</pkgmetadata>