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* sci-libs/med: restrict to hdf5<14Andrew Ammerlaan2023-04-181-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cgnslib: restrict to hdf5<14Andrew Ammerlaan2023-04-181-1/+1
| | | | | Bug: https://bugs.gentoo.org/904515 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libcifpp: drop 5.0.5Pacho Ramos2023-04-182-35/+0
| | | | Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/ignition-math: bump to 6.14.0Alexis Ballier2023-04-183-15/+2
| | | | Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/hdf5: add 1.14.0Sam James2023-04-182-0/+120
| | | | | Closes: https://bugs.gentoo.org/863089 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/symengine: keyword 0.10.1 for ~loongWANG Xuerui2023-04-161-1/+1
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/plplot: fix configure w/ clang 16Sam James2023-04-142-0/+19
| | | | | Closes: https://bugs.gentoo.org/898258 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf5: fix configure w/ clang 16Sam James2023-04-142-0/+31
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/transformers: new package, add 4.27.4Alfredo Tupone2023-04-133-0/+48
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: to build with gcc-13Alfredo Tupone2023-04-122-0/+42
| | | | | Closes: https://bugs.gentoo.org/904086 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/kineto: include stdintAlfredo Tupone2023-04-123-5/+19
| | | | | Closes: https://bugs.gentoo.org/904085 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/tokenizers: add dep on setuptools_rustAlfredo Tupone2023-04-121-0/+2
| | | | | Closes: https://bugs.gentoo.org/904216 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/huggingface_hub: new package, add 0.13.4Alfredo Tupone2023-04-123-0/+35
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/tokenizers: new package, add 0.13.3Alfredo Tupone2023-04-113-0/+652
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/gloo: add 2023.01.17Alfredo Tupone2023-04-092-0/+50
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: enable use of FBGEMMAlfredo Tupone2023-04-082-2/+4
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/rtree: Remove oldMichał Górny2023-04-082-32/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/rtree: Stabilize 1.0.0 amd64, #904007Arthur Zamarin2023-04-081-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/armadillo: drop 10.7.1Andreas K. Hüttel2023-04-072-151/+0
| | | | Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/caffe2: depends on a new XNNPACKAlfredo Tupone2023-04-061-1/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/htslib: drop 1.16David Seifert2023-04-062-53/+0
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/XNNPACK: add 2022.12.22Alfredo Tupone2023-04-062-0/+85
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/volk: EAPI 7->8, add python 3.11Rick Farina2023-04-051-2/+2
| | | | | Closes: https://bugs.gentoo.org/897232 Signed-off-by: Rick Farina <zerochaos@gentoo.org>
* sci-libs/pytorch: add 2.0.0Alfredo Tupone2023-04-054-0/+100
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: add 2.0.0Alfredo Tupone2023-04-053-0/+374
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/onnx: add 1.13.1Alfredo Tupone2023-04-042-0/+31
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/armadillo: add 12.0.1Andreas K. Hüttel2023-04-023-0/+169
| | | | Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/pastix: Stabilize 6.0.3 arm64, #899448Arthur Zamarin2023-04-011-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/scotch: Stabilize 7.0.1-r1 arm64, #899454Sam James2023-04-011-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf: Stabilize 4.9.2 x86, #886889Arthur Zamarin2023-03-311-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/netcdf: Stabilize 4.9.2 ppc, #886889Arthur Zamarin2023-03-311-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/rocBLAS: adapt for msgpack-cxx-6.0.0Marek Szuba2023-03-302-2/+2
| | | | Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/hdf5: Stabilize 1.12.2-r5 arm, #899460Arthur Zamarin2023-03-301-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/htslib: add 1.17David Seifert2023-03-302-0/+53
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/ignition-common: fix build with ffmpeg6Alexis Ballier2023-03-292-2/+45
| | | | Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/caffe2: avoid the use of MKLAlfredo Tupone2023-03-261-0/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/rtree: Use pypi.eclassMichał Górny2023-03-251-6/+3
| | | | | Closes: https://github.com/gentoo/gentoo/pull/30329 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/keras-preprocessing: Use pypi.eclassMichał Górny2023-03-251-4/+3
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/pytorch: drop building an empty .soAlfredo Tupone2023-03-242-0/+16
| | | | | Closes: https://bugs.gentoo.org/902727 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/symengine: add 0.10.1, drop 0.10.0Sam James2023-03-242-1/+1
| | | | | | 0.10.0 was a short-lived release. 0.10.1 has very fixes on top. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/symengine: add 0.10.0Sam James2023-03-222-0/+104
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/nlopt: Fortran is only needed for testsViolet Purcell2023-03-192-0/+2
| | | | | | Signed-off-by: Violet Purcell <vimproved@inventati.org> Closes: https://github.com/gentoo/gentoo/pull/30201 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Don't include ROOT in directory of eselect entriesJames Le Cuirot2023-03-181-2/+2
| | | | | | ROOT is not applicable at runtime, so only the EPREFIX should be present. Signed-off-by: James Le Cuirot <chewi@gentoo.org>
* sci-libs/lapack: Fix cross-compiling by disabling Fortran compiler testsJames Le Cuirot2023-03-181-0/+3
| | | | | | | Upstream has already decided to disable these tests by default in the next release for this and other reasons. Signed-off-by: James Le Cuirot <chewi@gentoo.org>
* sci-libs/caffe2: sci-libs/caffe2-1.13.1-r4 fails during install - rm: cannot ↵Larry D. Pyeatt2023-03-171-1/+1
| | | | | | | | | remove '/dev/shm/portage/sci-libs/caffe2-1.13.1-r4/image/var/tmp': No such file or directory Closes: https://bugs.gentoo.org/901967 Signed-off-by: Larry D. Pyeatt <larry.pyeatt@sdsmt.edu> Closes: https://github.com/gentoo/gentoo/pull/30187 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/scikit-optimize: Use pypi.eclassMichał Górny2023-03-171-2/+2
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/dmlc-core: add 0.5Peter Levine2023-03-172-0/+106
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - add cpu_flags_x86_sse2 to IUSE It's true it only adds an -m flag to CXXFLAGS but so do most uses of CPU_FLAGS_X86. Also, remove automagic from CMakeLists.txt and pass -DSUPPORT_MSSE2 explicitly - remove patch Appears to be no longer needed. - fix dependencies Make gtest a proper bdep. The presence of texlive-fontutils appears irrelevant as the generated docs compare the same. curl is only needed for s3. - fix testing Portage doesn't set LD_LIBRARY_PATH resulting in a leading colon when used in LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${BUILD_DIR}". It builds fine with just -L\"${BUILD_DIR}\" and testing runs fine with just LD_LIBRARY_PATH="${BUILD_DIR}". It doesn't appear to need tc-export CXX to find the correct compiler. GTEST_LIB needs to be changed to the correct libdir. Otherwise it passes -L/lib/ triggering it to build in x86 mode and fail at linking stage. Alter GTEST_INC also for good measure. Pass -DGOOGLE_TEST for ctest testing, while also keeping non-ctest tests. Pass USE_CXX14_IF_AVAILABLE to cmake and change -std=c++11 to -std=c++14 in the Makefile to support the latest gtest. - use emake to build docs and tests in src_compile `emake test` is more appropriate in src_compile. And `emake doxygen` works fine to generate docs. - add little-endian tests Pass DMLC_UNIT_TEST_LITTLE_ENDIAN for a few more tests. Closes: https://bugs.gentoo.org/894038 Closes: https://github.com/gentoo/gentoo/pull/29572 Signed-off-by: Peter Levine <plevine457@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/netcdf: remove unused patchMichael Mair-Keimberger2023-03-171-46/+0
| | | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/30157 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/geos: add 3.11.2Sam James2023-03-173-0/+89
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf: Stabilize 4.9.2 ppc64, #886889Arthur Zamarin2023-03-161-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>