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* Globally add missing remote ID references to metadata.xmlJustin Lecher2017-04-297-9/+18
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/trnascan-se: Drop oldJustin Lecher2017-04-292-45/+0
| | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/trnascan-se: x86 stable wrt bug #615564Agostino Sarubbo2017-04-271-1/+1
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/rebase: Version BumpJustin Lecher2017-04-232-0/+46
| | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/trnascan-se: amd64 stable wrt bug #615564Agostino Sarubbo2017-04-231-1/+1
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/velvet: v4 expose additional variables as described in manualMartin Mokrejš2017-04-221-4/+3
| | | | | | | | | Also move the -j1 argument values onto the emake line directly. Package-Manager: Portage-2.3.5, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4421 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/velvet: v3 expose additional variables as described in manualMartin Mokrejš2017-04-221-4/+4
| | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4421 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/velvet: simplify tests in ebuildMartin Mokrejš2017-04-221-6/+6
| | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4421 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/velvet: expose additional variables as described in manual and ↵Martin Mokrejš2017-04-221-4/+9
| | | | | | | | | needed at compile time Package-Manager: Portage-2.3.5, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4421 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/foldingathome: switch EPREFIX usages in pkg_* back to EROOTIan Stakenvicius2017-04-211-3/+3
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/foldingathome: bump EAPIIan Stakenvicius2017-04-211-11/+11
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/foldingathome: drop obsolete versionIan Stakenvicius2017-04-212-83/+0
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/foldingathome: fix use of $PORTDIR in phase functionIan Stakenvicius2017-04-211-9/+15
| | | | | | Bug: http://bugs.gentoo.org/566402 Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/seqan: [QA] Add missing python metadata variablesDavid Seifert2017-04-202-16/+36
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-biology/samtools: [QA] Add missing python metadata variablesDavid Seifert2017-04-206-18/+18
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-biology/last: [QA] Add missing python metadata variablesDavid Seifert2017-04-203-21/+190
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-biology/trnascan-se: Bump EAPI to 6Justin Lecher2017-04-141-7/+8
| | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/unafold: Remove old, bug 605728Andreas K. Hüttel2017-04-101-31/+0
| | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-biology/tophat: Unbundle python modulesDavid Seifert2017-04-012-11/+50
| | | | | Bug: https://bugs.gentoo.org/show_bug.cgi?id=614370 Package-Manager: Portage-2.3.5, Repoman-2.3.2
* sci-biology/pilercr: Modernise to EAPI 6David Seifert2017-03-083-30/+64
| | | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4165
* sci-biology/piler: Modernise to EAPI 6David Seifert2017-03-083-35/+72
| | | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4165
* sci-biology/pals: Modernise to EAPI 6David Seifert2017-03-082-8/+43
| | | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4165
* sci-biology/clustalw-mpi: Modernise to EAPI 6David Seifert2017-03-081-6/+10
| | | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4165
* sci-biology/blat: Remove oldDavid Seifert2017-03-083-303/+0
| | | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4165
* sci-biology/blat: Modernise to EAPI 6David Seifert2017-03-082-0/+249
| | | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4165
* sci-biology/elph: Remove oldDavid Seifert2017-03-084-197/+0
| | | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4165
* sci-biology/iqpnni: Remove oldDavid Seifert2017-03-083-47/+0
| | | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4165
* sci-biology/mummer: Remove oldDavid Seifert2017-03-088-342/+0
| | | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4165
* sci-biology/mummer: Version bump to 3.23David Seifert2017-03-085-0/+602
| | | | | | | | | * EAPI 6 * Make build system saner * Fix C++ QA warnings Package-Manager: Portage-2.3.4, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4165
* sci-biology/prints: Modernise to EAPI 6David Seifert2017-03-081-12/+14
| | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2
* sci-biology/elph: Modernise to EAPI 6David Seifert2017-03-082-0/+86
| | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2
* sci-biology/biosql: Modernise to EAPI 6David Seifert2017-03-081-11/+22
| | | | Package-Manager: Portage-2.3.4, Repoman-2.3.2
* Drop $Id$ per council decision in bug #611234.Robin H. Johnson2017-02-28215-215/+0
| | | | Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
* sci-biology/rebase: Version BumpJustin Lecher2017-02-272-0/+47
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/ariadne: Remove oldDavid Seifert2017-02-262-78/+0
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/ariadne: Modernise to EAPI 6David Seifert2017-02-262-2/+49
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/snpfile: Remove oldDavid Seifert2017-02-262-62/+0
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/4083
* sci-biology/snpfile: Modernise to EAPI 6David Seifert2017-02-263-4/+86
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/4083
* sci-biology/blossoc: Remove oldDavid Seifert2017-02-261-31/+0
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/4083
* sci-biology/blossoc: Modernise to EAPI 6David Seifert2017-02-263-2/+295
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 RepoMan-Options: --force Closes: https://github.com/gentoo/gentoo/pull/4083
* sci-biology/prodigal: Remove oldDavid Seifert2017-02-253-62/+0
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/prodigal: Version bump to 2.6.3David Seifert2017-02-253-0/+73
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/njplot: Remove oldDavid Seifert2017-02-252-69/+0
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/njplot: Modernise to EAPI 6David Seifert2017-02-251-0/+39
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/sim4: Remove oldDavid Seifert2017-02-252-45/+0
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/sim4: Modernise to EAPI 6David Seifert2017-02-252-0/+50
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/trf: Modernise to EAPI 6David Seifert2017-02-251-10/+3
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/transfac: Modernise to EAPI 6David Seifert2017-02-251-12/+15
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/phyml: Modernise to EAPI 6David Seifert2017-02-252-10/+74
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/cd-hit: Remove oldDavid Seifert2017-02-257-432/+0
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1